NIRISS Imaging Pipeline Notebook#
Authors: S. LaMassa, R. Diaz
Last Updated: May 5, 2025
Pipeline Version: 1.18.0 (Build 11.3)
Purpose:#
This notebook provides a framework for processing generic Near-Infrared Imager and Slitless Spectrograph (NIRISS) Imaging data through all three James Webb Space Telescope (JWST) pipeline stages. Data is assumed to be located in one observation folder according to paths set up below. It should not be necessary to edit any cells other than in the Configuration section unless modifying the standard pipeline processing options.
Data: This example is set up to use an example dataset is from Program ID 1475 (PI: Boyer, CoI: Volk) which is a sky flat calibration program. NIRCam is used as the primary instrument with NIRISS as a coordinated parallel instrument. The NIRISS imaging dataset uses a 17-step dither pattern.
Example input data to use will be downloaded automatically unless disabled (i.e., to use local files instead).
JWST pipeline version and CRDS context This notebook was written for the
calibration pipeline version given above. It sets the CRDS context
to use the most recent version available in the JWST Calibration
Reference Data System (CRDS). If you use different pipeline versions or
CRDS context, please read the relevant release notes
(here for pipeline,
here for CRDS) for possibly relevant
changes.
Updates: This notebook is regularly updated as improvements are made to the pipeline. Find the most up to date version of this notebook at: https://github.com/spacetelescope/jwst-pipeline-notebooks/
Recent Changes:
January 24, 2024: original notebook released
Septemer 3, 2024: Updated text to highlight that IRAFStarFinder is the default
centroiding algorithm used in the Image3 tweakreg step of the pipeline for NIRISS imaging, as of
pipeline version 1.14.0 (build 10.2).
November 22, 2024: Updates to workflow when skipping pipeline modules
January 31, 2025: Update to build 11.2, no significant changes.
May 5, 2025: Updated to jwst 1.18.0 (no significant changes)
Table of Contents#
Configuration
Package Imports
Demo Mode Setup (ignore if not using demo data)
Directory Setup
Detector 1 Pipeline
Image2 Pipeline
Image3 Pipeline
Visualize the data
1. Configuration#
Set basic configuration for running notebook.
Install dependencies and parameters#
To make sure that the pipeline version is compatabile with the steps
discussed below and the required dependencies and packages are installed,
you can create a fresh conda environment and install the provided
requirements.txt file:
conda create -n niriss_imaging_pipeline python=3.11
conda activate niriss_imaging_pipeline
pip install -r requirements.txt
Set the basic parameters to use with this notebook. These will affect what data is used, where data is located (if already in disk), and pipeline modules run in this data. The list of parameters are:
demo_mode
directories with data
pipeline modules
# Basic import necessary for configuration
import os
Note that
demo_mode must be set appropriately below.
Set demo_mode = True to run in demonstration mode. In this
mode this notebook will download example data from the Barbara A.
Mikulski Archive for Space Telescopes (MAST) and process it through the
pipeline. This will all happen in a local directory unless modified
in Section 3
below.
Set demo_mode = False if you want to process your own data
that has already been downloaded and provide the location of the data.
# Set parameters for demo_mode, channel, band, data mode directories, and
# processing steps.
# -----------------------------Demo Mode---------------------------------
demo_mode = True
if demo_mode:
print('Running in demonstration mode using online example data!')
# --------------------------User Mode Directories------------------------
# If demo_mode = False, look for user data in these paths
if not demo_mode:
# Set directory paths for processing specific data; these will need
# to be changed to your local directory setup (below are given as
# examples)
user_home_dir = os.path.expanduser('~')
# Point to where science observation data are
# Assumes uncalibrated data in sci_dir/uncal/ and results in stage1,
# stage2, stage3 directories
sci_dir = os.path.join(user_home_dir, 'FlightData/APT1475/data/Obs006/')
# --------------------------Set Processing Steps--------------------------
# Individual pipeline stages can be turned on/off here. Note that a later
# stage won't be able to run unless data products have already been
# produced from the prior stage.
# Science processing
dodet1 = True # calwebb_detector1
doimage2 = True # calwebb_image2
doimage3 = True # calwebb_image3
doviz = True # Visualize calwebb_image3 output
Running in demonstration mode using online example data!
Set CRDS context and server#
Before importing CRDS and JWST modules, we need
to configure our environment. This includes defining a CRDS cache
directory in which to keep the reference files that will be used by the
calibration pipeline.
If the root directory for the local CRDS cache directory has not been set already, it will be set to create one in the home directory.
# ------------------------Set CRDS context and paths----------------------
# Set CRDS context (if overriding to use a specific version of reference
# files; leave commented out to use latest reference files by default)
#%env CRDS_CONTEXT jwst_1254.pmap
# Check whether the local CRDS cache directory has been set.
# If not, set it to the user home directory
if (os.getenv('CRDS_PATH') is None):
os.environ['CRDS_PATH'] = os.path.join(os.path.expanduser('~'), 'crds')
# Check whether the CRDS server URL has been set. If not, set it.
if (os.getenv('CRDS_SERVER_URL') is None):
os.environ['CRDS_SERVER_URL'] = 'https://jwst-crds.stsci.edu'
# Echo CRDS path in use
print(f"CRDS local filepath: {os.environ['CRDS_PATH']}")
print(f"CRDS file server: {os.environ['CRDS_SERVER_URL']}")
CRDS local filepath: /home/runner/crds
CRDS file server: https://jwst-crds.stsci.edu
2. Package Imports#
# Use the entire available screen width for this notebook
from IPython.display import display, HTML
display(HTML("<style>.container { width:95% !important; }</style>"))
# Basic system utilities for interacting with files
# ----------------------General Imports------------------------------------
import glob
import time
from pathlib import Path
#import urllib.request
# Numpy for doing calculations
import numpy as np
# -----------------------Astroquery Imports--------------------------------
# ASCII files, and downloading demo files
from astroquery.mast import Observations
# For visualizing images
from jdaviz import Imviz
# Astropy routines for visualizing detected sources:
from astropy.table import Table
from astropy.coordinates import SkyCoord
# for JWST calibration pipeline
import jwst
import crds
from jwst.pipeline import Detector1Pipeline
from jwst.pipeline import Image2Pipeline
from jwst.pipeline import Image3Pipeline
# JWST pipeline utilities
from jwst import datamodels
from jwst.associations import asn_from_list # Tools for creating association files
from jwst.associations.lib.rules_level3_base import DMS_Level3_Base # Definition of a Lvl3 association file
# Echo pipeline version and CRDS context in use
print(f"JWST Calibration Pipeline Version: {jwst.__version__}")
print(f"Using CRDS Context: {crds.get_context_name('jwst')}")
JWST Calibration Pipeline Version: 1.18.0
CRDS - INFO - Calibration SW Found: jwst 1.18.0 (/usr/share/miniconda/lib/python3.13/site-packages/jwst-1.18.0.dist-info)
Using CRDS Context: jwst_1364.pmap
# Start a timer to keep track of runtime
time0 = time.perf_counter()
3. Demo Mode Setup (ignore if not using demo data)#
If running in demonstration mode, set up the program information to
retrieve the uncalibrated data automatically from MAST using
astroquery.
MAST allows for flexibility of searching by the proposal ID and the
observation ID instead of just filenames.
For illustrative purposes, we focus on data taken through the NIRISS
F150W filter
and start with uncalibrated data products. The files are named
jw01475006001_02201_000nn_nis_uncal.fits, where nn refers to the
dither step number which ranges from 01 - 17.
More information about the JWST file naming conventions can be found at: https://jwst-pipeline.readthedocs.io/en/latest/jwst/data_products/file_naming.html
# Set up the program information and paths for demo program
if demo_mode:
print('Running in demonstration mode and will download example data from MAST!')
program = '01475'
sci_observtn = "006"
visit = "001"
data_dir = os.path.join('.', 'nis_im_demo_data')
download_dir = data_dir
sci_dir = os.path.join(data_dir, 'Obs' + sci_observtn)
uncal_dir = os.path.join(sci_dir, 'uncal')
# Ensure filepaths for input data exist
if not os.path.exists(uncal_dir):
os.makedirs(uncal_dir)
# Create directory if it does not exist
if not os.path.isdir(data_dir):
os.mkdir(data_dir)
Running in demonstration mode and will download example data from MAST!
Identify list of science (SCI) uncalibrated files associated with visits.
Selects only filter f150w data
# Obtain a list of observation IDs for the specified demo program
if demo_mode:
# Science data
sci_obs_id_table = Observations.query_criteria(instrument_name=["NIRISS/IMAGE"],
provenance_name=["CALJWST"], # Executed observations
filters=['F150W'], # Data for Specific Filter
obs_id=['jw' + program + '-o' + sci_observtn + '*']
)
# Turn the list of visits into a list of uncalibrated data files
if demo_mode:
# Define types of files to select
file_dict = {'uncal': {'product_type': 'SCIENCE',
'productSubGroupDescription': 'UNCAL',
'calib_level': [1]}}
# Science files
sci_files_to_download = []
# Loop over visits identifying uncalibrated files that are associated
# with them
for exposure in (sci_obs_id_table):
products = Observations.get_product_list(exposure)
for filetype, query_dict in file_dict.items():
filtered_products = Observations.filter_products(products, productType=query_dict['product_type'],
productSubGroupDescription=query_dict['productSubGroupDescription'],
calib_level=query_dict['calib_level'])
sci_files_to_download.extend(filtered_products['dataURI'])
sci_files_to_download = sorted(sci_files_to_download)
print(f"Science files selected for downloading: {len(sci_files_to_download)}")
Science files selected for downloading: 17
Download all the uncal files and place them into the appropriate directories.
Warning: If this notebook is halted during this step the downloaded file
may be incomplete, and cause crashes later on!
if demo_mode:
for filename in sci_files_to_download:
sci_manifest = Observations.download_file(filename,
local_path=os.path.join(uncal_dir, Path(filename).name))
Downloading URL https://mast.stsci.edu/api/v0.1/Download/file?uri=mast:JWST/product/jw01475006001_02201_00001_nis_uncal.fits to ./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00001_nis_uncal.fits ...
[Done]
Downloading URL https://mast.stsci.edu/api/v0.1/Download/file?uri=mast:JWST/product/jw01475006001_02201_00002_nis_uncal.fits to ./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00002_nis_uncal.fits ...
[Done]
Downloading URL https://mast.stsci.edu/api/v0.1/Download/file?uri=mast:JWST/product/jw01475006001_02201_00003_nis_uncal.fits to ./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00003_nis_uncal.fits ...
[Done]
Downloading URL https://mast.stsci.edu/api/v0.1/Download/file?uri=mast:JWST/product/jw01475006001_02201_00004_nis_uncal.fits to ./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00004_nis_uncal.fits ...
[Done]
Downloading URL https://mast.stsci.edu/api/v0.1/Download/file?uri=mast:JWST/product/jw01475006001_02201_00005_nis_uncal.fits to ./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00005_nis_uncal.fits ...
[Done]
Downloading URL https://mast.stsci.edu/api/v0.1/Download/file?uri=mast:JWST/product/jw01475006001_02201_00006_nis_uncal.fits to ./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00006_nis_uncal.fits ...
[Done]
Downloading URL https://mast.stsci.edu/api/v0.1/Download/file?uri=mast:JWST/product/jw01475006001_02201_00007_nis_uncal.fits to ./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00007_nis_uncal.fits ...
[Done]
Downloading URL https://mast.stsci.edu/api/v0.1/Download/file?uri=mast:JWST/product/jw01475006001_02201_00008_nis_uncal.fits to ./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00008_nis_uncal.fits ...
[Done]
Downloading URL https://mast.stsci.edu/api/v0.1/Download/file?uri=mast:JWST/product/jw01475006001_02201_00009_nis_uncal.fits to ./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00009_nis_uncal.fits ...
[Done]
Downloading URL https://mast.stsci.edu/api/v0.1/Download/file?uri=mast:JWST/product/jw01475006001_02201_00010_nis_uncal.fits to ./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00010_nis_uncal.fits ...
[Done]
Downloading URL https://mast.stsci.edu/api/v0.1/Download/file?uri=mast:JWST/product/jw01475006001_02201_00011_nis_uncal.fits to ./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00011_nis_uncal.fits ...
[Done]
Downloading URL https://mast.stsci.edu/api/v0.1/Download/file?uri=mast:JWST/product/jw01475006001_02201_00012_nis_uncal.fits to ./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00012_nis_uncal.fits ...
[Done]
Downloading URL https://mast.stsci.edu/api/v0.1/Download/file?uri=mast:JWST/product/jw01475006001_02201_00013_nis_uncal.fits to ./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00013_nis_uncal.fits ...
[Done]
Downloading URL https://mast.stsci.edu/api/v0.1/Download/file?uri=mast:JWST/product/jw01475006001_02201_00014_nis_uncal.fits to ./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00014_nis_uncal.fits ...
[Done]
Downloading URL https://mast.stsci.edu/api/v0.1/Download/file?uri=mast:JWST/product/jw01475006001_02201_00015_nis_uncal.fits to ./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00015_nis_uncal.fits ...
[Done]
Downloading URL https://mast.stsci.edu/api/v0.1/Download/file?uri=mast:JWST/product/jw01475006001_02201_00016_nis_uncal.fits to ./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00016_nis_uncal.fits ...
[Done]
Downloading URL https://mast.stsci.edu/api/v0.1/Download/file?uri=mast:JWST/product/jw01475006001_02201_00017_nis_uncal.fits to ./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00017_nis_uncal.fits ...
[Done]
4. Directory Setup#
Set up detailed paths to input/output stages here.
# Define output subdirectories to keep science data products organized
uncal_dir = os.path.join(sci_dir, 'uncal') # Uncalibrated pipeline inputs should be here
det1_dir = os.path.join(sci_dir, 'stage1') # calwebb_detector1 pipeline outputs will go here
image2_dir = os.path.join(sci_dir, 'stage2') # calwebb_spec2 pipeline outputs will go here
image3_dir = os.path.join(sci_dir, 'stage3') # calwebb_spec3 pipeline outputs will go here
# We need to check that the desired output directories exist, and if not
# create them
if not os.path.exists(det1_dir):
os.makedirs(det1_dir)
if not os.path.exists(image2_dir):
os.makedirs(image2_dir)
if not os.path.exists(image3_dir):
os.makedirs(image3_dir)
Look at the first file to determine exposure parameters and practice using JWST datamodels¶
uncal_files = sorted(glob.glob(os.path.join(uncal_dir, '*_uncal.fits')))
# print file name
print(uncal_files[0])
# Open file as JWST datamodel
examine = datamodels.open(uncal_files[0])
# Print out exposure info
print(f"Instrument: {examine.meta.instrument.name}")
print(f"Filter: {examine.meta.instrument.filter}")
print(f"Pupil: {examine.meta.instrument.pupil}")
print(f"Number of integrations: {examine.meta.exposure.nints}")
print(f"Number of groups: {examine.meta.exposure.ngroups}")
print(f"Readout pattern: {examine.meta.exposure.readpatt}")
print(f"Dither position number: {examine.meta.dither.position_number}")
print("\n")
./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00001_nis_uncal.fits
Instrument: NIRISS
Filter: CLEAR
Pupil: F150W
Number of integrations: 1
Number of groups: 16
Readout pattern: NIS
Dither position number: 1
From the above, we confirm that the data file is for the NIRISS instrument
using the F150W filter in the Pupil Wheel
crossed with the CLEAR filter in the Filter Wheel. This observation uses
the NIS readout pattern,
16 groups per integration, and 1 integration per exposure. This data file
is the 1st dither position in this exposure sequence. For more information
about how JWST exposures are defined by up-the-ramp sampling, see the
Understanding Exposure Times JDox article.
This metadata will be the same for all exposures in this observation other than the dither position number.
# Print out the time benchmark
time1 = time.perf_counter()
print(f"Runtime so far: {time1 - time0:0.0f} seconds")
Runtime so far: 38 seconds
5. Detector1 Pipeline#
Run the datasets through the
Detector1
stage of the pipelineto apply detector level calibrations and create a
countrate data product where slopes are fitted to the integration ramps.
These *_rate.fits products are 2D (nrows x ncols), averaged over all
integrations. 3D countrate data products (*_rateints.fits) are also
created (nintegrations x nrows x ncols) which have the fitted ramp slopes
for each integration.
By default, all steps in the Detector1 stage of the pipeline are run for
NIRISS except: the ipc correction step and the gain_scale step. Note
that while the persistence step
is set to run by default, this step does not automatically correct the
science data for persistence. The persistence step creates a
*_trapsfilled.fits file which is a model that records the number
of traps filled at each pixel at the end of an exposure. This file would be
used as an input to the persistence step, via the input_trapsfilled
argument, to correct a science exposure for persistence. Since persistence
is not well calibrated for NIRISS, we do not perform a persistence
correction and thus turn off this step to speed up calibration and to not
create files that will not be used in the subsequent analysis. This step
can be turned off when running the pipeline in Python by doing:
rate_result = Detector1Pipeline.call(uncal,steps={'persistence': {'skip': True}})
or as indicated in the cell bellow using a dictionary.
The charge_migration step
is particularly important for NIRISS images to mitigate apparent flux loss
in resampled images due to the spilling of charge from a central pixel into
its neighboring pixels (see Goudfrooij et al. 2023
for details). Charge migration occurs when the accumulated charge in a
central pixel exceeds a certain signal limit, which is ~25,000 ADU. This
step is turned on by default for NIRISS imaging mode when using CRDS
contexts of jwst_1159.pmap or later. Different signal limits for each filter are provided by the
pars-chargemigrationstep parameter files.
Users can specify a different signal limit by running this step with the
signal_threshold flag and entering another signal limit in units of ADU.
As of CRDS context jwst_1155.pmap and later, the
jump step
of the DETECTOR1 stage of the pipeline will remove residuals associated
with snowballs
for the NIRISS imaging mode. The default parameters for this correction,
where expand_large_events set to True turns on the snowball halo
removal algorithm, are specified in the pars-jumpstep parameter
reference files. Users may wish to alter parameters to optimize removal of
snowball residuals. Available parameters are discussed in the
Detection and Flagging of Showers and Snowballs in JWST Technical Report (Regan 2023).
# Set up a dictionary to define how the Detector1 pipeline should be configured
# Boilerplate dictionary setup
det1dict = {}
det1dict['group_scale'], det1dict['dq_init'], det1dict['saturation'] = {}, {}, {}
det1dict['ipc'], det1dict['superbias'], det1dict['refpix'] = {}, {}, {}
det1dict['linearity'], det1dict['persistence'], det1dict['dark_current'], = {}, {}, {}
det1dict['charge_migration'], det1dict['jump'], det1dict['ramp_fit'] = {}, {}, {}
det1dict['gain_scale'] = {}
# Overrides for whether or not certain steps should be skipped
# skipping the persistence step
det1dict['persistence']['skip'] = True
#det1dict['jump']['find_showers'] = False # Turn off detection of cosmic ray showers
# Overrides for various reference files
# Files should be in the base local directory or provide full path
#det1dict['dq_init']['override_mask'] = 'myfile.fits' # Bad pixel mask
#det1dict['saturation']['override_saturation'] = 'myfile.fits' # Saturation
#det1dict['reset']['override_reset'] = 'myfile.fits' # Reset
#det1dict['linearity']['override_linearity'] = 'myfile.fits' # Linearity
#det1dict['rscd']['override_rscd'] = 'myfile.fits' # RSCD
#det1dict['dark_current']['override_dark'] = 'myfile.fits' # Dark current subtraction
#det1dict['jump']['override_gain'] = 'myfile.fits' # Gain used by jump step
#det1dict['ramp_fit']['override_gain'] = 'myfile.fits' # Gain used by ramp fitting step
#det1dict['jump']['override_readnoise'] = 'myfile.fits' # Read noise used by jump step
#det1dict['ramp_fit']['override_readnoise'] = 'myfile.fits' # Read noise used by ramp fitting step
# Turn on multi-core processing (off by default). Choose what fraction of cores to use (quarter, half, or all)
det1dict['jump']['maximum_cores'] = 'half'
# Alter parameters to optimize removal of snowball residuals (example)
#det1dict['jump']['expand_large_events'] = True
#det1dict['charge_migration']['signal_threshold'] = X
# Run Detector1 stage of pipeline, specifying:
# output directory to save *_rate.fits files
# save_results flag set to True so the rate files are saved
if dodet1:
for uncal in uncal_files:
rate_result = Detector1Pipeline.call(uncal, output_dir=det1_dir, steps=det1dict, save_results=True,)
else:
print('Skipping Detector1 processing')
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2025-05-13 13:49:18,946 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_pars-spec2pipeline_0013.rmap 2.1 K bytes (16 / 204 files) (75.6 K / 741.0 K bytes)
2025-05-13 13:49:19,031 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_pars-resamplespecstep_0002.rmap 709 bytes (17 / 204 files) (77.8 K / 741.0 K bytes)
2025-05-13 13:49:19,117 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_pars-outlierdetectionstep_0005.rmap 1.1 K bytes (18 / 204 files) (78.5 K / 741.0 K bytes)
2025-05-13 13:49:19,202 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_pars-jumpstep_0005.rmap 810 bytes (19 / 204 files) (79.6 K / 741.0 K bytes)
2025-05-13 13:49:19,311 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_pars-image2pipeline_0008.rmap 1.0 K bytes (20 / 204 files) (80.4 K / 741.0 K bytes)
2025-05-13 13:49:19,420 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_pars-detector1pipeline_0003.rmap 1.1 K bytes (21 / 204 files) (81.4 K / 741.0 K bytes)
2025-05-13 13:49:19,503 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_pars-darkpipeline_0003.rmap 872 bytes (22 / 204 files) (82.5 K / 741.0 K bytes)
2025-05-13 13:49:19,615 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_pars-darkcurrentstep_0003.rmap 1.8 K bytes (23 / 204 files) (83.4 K / 741.0 K bytes)
2025-05-13 13:49:19,702 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_ote_0030.rmap 1.3 K bytes (24 / 204 files) (85.2 K / 741.0 K bytes)
2025-05-13 13:49:19,786 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_msaoper_0016.rmap 1.5 K bytes (25 / 204 files) (86.4 K / 741.0 K bytes)
2025-05-13 13:49:19,875 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_msa_0027.rmap 1.3 K bytes (26 / 204 files) (87.9 K / 741.0 K bytes)
2025-05-13 13:49:19,960 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_mask_0043.rmap 3.5 K bytes (27 / 204 files) (89.2 K / 741.0 K bytes)
2025-05-13 13:49:20,066 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_linearity_0017.rmap 1.6 K bytes (28 / 204 files) (92.7 K / 741.0 K bytes)
2025-05-13 13:49:20,154 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_ipc_0006.rmap 876 bytes (29 / 204 files) (94.3 K / 741.0 K bytes)
2025-05-13 13:49:20,237 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_ifuslicer_0017.rmap 1.5 K bytes (30 / 204 files) (95.2 K / 741.0 K bytes)
2025-05-13 13:49:20,321 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_ifupost_0019.rmap 1.5 K bytes (31 / 204 files) (96.7 K / 741.0 K bytes)
2025-05-13 13:49:20,405 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_ifufore_0017.rmap 1.5 K bytes (32 / 204 files) (98.2 K / 741.0 K bytes)
2025-05-13 13:49:20,496 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_gain_0023.rmap 1.8 K bytes (33 / 204 files) (99.7 K / 741.0 K bytes)
2025-05-13 13:49:20,582 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_fpa_0028.rmap 1.3 K bytes (34 / 204 files) (101.5 K / 741.0 K bytes)
2025-05-13 13:49:20,669 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_fore_0026.rmap 5.0 K bytes (35 / 204 files) (102.7 K / 741.0 K bytes)
2025-05-13 13:49:20,752 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_flat_0015.rmap 3.8 K bytes (36 / 204 files) (107.7 K / 741.0 K bytes)
2025-05-13 13:49:20,835 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_fflat_0026.rmap 7.2 K bytes (37 / 204 files) (111.5 K / 741.0 K bytes)
2025-05-13 13:49:20,919 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_extract1d_0018.rmap 2.3 K bytes (38 / 204 files) (118.7 K / 741.0 K bytes)
2025-05-13 13:49:21,003 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_disperser_0028.rmap 5.7 K bytes (39 / 204 files) (121.0 K / 741.0 K bytes)
2025-05-13 13:49:21,090 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_dflat_0007.rmap 1.1 K bytes (40 / 204 files) (126.7 K / 741.0 K bytes)
2025-05-13 13:49:21,172 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_dark_0074.rmap 34.2 K bytes (41 / 204 files) (127.9 K / 741.0 K bytes)
2025-05-13 13:49:21,299 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_cubepar_0015.rmap 966 bytes (42 / 204 files) (162.1 K / 741.0 K bytes)
2025-05-13 13:49:21,383 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_collimator_0026.rmap 1.3 K bytes (43 / 204 files) (163.1 K / 741.0 K bytes)
2025-05-13 13:49:21,465 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_camera_0026.rmap 1.3 K bytes (44 / 204 files) (164.4 K / 741.0 K bytes)
2025-05-13 13:49:21,550 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_barshadow_0007.rmap 1.8 K bytes (45 / 204 files) (165.7 K / 741.0 K bytes)
2025-05-13 13:49:21,664 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_area_0018.rmap 6.3 K bytes (46 / 204 files) (167.5 K / 741.0 K bytes)
2025-05-13 13:49:21,748 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_apcorr_0009.rmap 5.6 K bytes (47 / 204 files) (173.8 K / 741.0 K bytes)
2025-05-13 13:49:21,831 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nirspec_0398.imap 5.8 K bytes (48 / 204 files) (179.3 K / 741.0 K bytes)
2025-05-13 13:49:21,915 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_wfssbkg_0010.rmap 3.1 K bytes (49 / 204 files) (185.1 K / 741.0 K bytes)
2025-05-13 13:49:21,998 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_wavelengthrange_0006.rmap 862 bytes (50 / 204 files) (188.2 K / 741.0 K bytes)
2025-05-13 13:49:22,081 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_trappars_0004.rmap 753 bytes (51 / 204 files) (189.1 K / 741.0 K bytes)
2025-05-13 13:49:22,188 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_trapdensity_0005.rmap 705 bytes (52 / 204 files) (189.9 K / 741.0 K bytes)
2025-05-13 13:49:22,270 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_throughput_0005.rmap 1.3 K bytes (53 / 204 files) (190.6 K / 741.0 K bytes)
2025-05-13 13:49:22,377 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_superbias_0030.rmap 7.4 K bytes (54 / 204 files) (191.8 K / 741.0 K bytes)
2025-05-13 13:49:22,461 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_specwcs_0014.rmap 3.1 K bytes (55 / 204 files) (199.2 K / 741.0 K bytes)
2025-05-13 13:49:22,546 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_specprofile_0008.rmap 2.4 K bytes (56 / 204 files) (202.4 K / 741.0 K bytes)
2025-05-13 13:49:22,630 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_speckernel_0006.rmap 1.0 K bytes (57 / 204 files) (204.7 K / 741.0 K bytes)
2025-05-13 13:49:22,737 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_sirskernel_0001.rmap 627 bytes (58 / 204 files) (205.8 K / 741.0 K bytes)
2025-05-13 13:49:22,821 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_saturation_0015.rmap 829 bytes (59 / 204 files) (206.4 K / 741.0 K bytes)
2025-05-13 13:49:22,931 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_readnoise_0011.rmap 987 bytes (60 / 204 files) (207.2 K / 741.0 K bytes)
2025-05-13 13:49:23,015 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_photom_0036.rmap 1.3 K bytes (61 / 204 files) (208.2 K / 741.0 K bytes)
2025-05-13 13:49:23,097 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_persat_0007.rmap 674 bytes (62 / 204 files) (209.5 K / 741.0 K bytes)
2025-05-13 13:49:23,181 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_pathloss_0003.rmap 758 bytes (63 / 204 files) (210.1 K / 741.0 K bytes)
2025-05-13 13:49:23,286 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_pastasoss_0004.rmap 818 bytes (64 / 204 files) (210.9 K / 741.0 K bytes)
2025-05-13 13:49:23,396 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_pars-undersamplecorrectionstep_0001.rmap 904 bytes (65 / 204 files) (211.7 K / 741.0 K bytes)
2025-05-13 13:49:23,479 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_pars-tweakregstep_0012.rmap 3.1 K bytes (66 / 204 files) (212.6 K / 741.0 K bytes)
2025-05-13 13:49:23,584 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_pars-spec2pipeline_0008.rmap 984 bytes (67 / 204 files) (215.8 K / 741.0 K bytes)
2025-05-13 13:49:23,691 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_pars-sourcecatalogstep_0002.rmap 2.3 K bytes (68 / 204 files) (216.7 K / 741.0 K bytes)
2025-05-13 13:49:23,773 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_pars-resamplestep_0002.rmap 687 bytes (69 / 204 files) (219.1 K / 741.0 K bytes)
2025-05-13 13:49:23,855 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_pars-outlierdetectionstep_0004.rmap 2.7 K bytes (70 / 204 files) (219.7 K / 741.0 K bytes)
2025-05-13 13:49:23,936 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_pars-jumpstep_0007.rmap 6.4 K bytes (71 / 204 files) (222.4 K / 741.0 K bytes)
2025-05-13 13:49:24,045 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_pars-image2pipeline_0005.rmap 1.0 K bytes (72 / 204 files) (228.8 K / 741.0 K bytes)
2025-05-13 13:49:24,128 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_pars-detector1pipeline_0002.rmap 1.0 K bytes (73 / 204 files) (229.8 K / 741.0 K bytes)
2025-05-13 13:49:24,213 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_pars-darkpipeline_0002.rmap 868 bytes (74 / 204 files) (230.8 K / 741.0 K bytes)
2025-05-13 13:49:24,295 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_pars-darkcurrentstep_0001.rmap 591 bytes (75 / 204 files) (231.7 K / 741.0 K bytes)
2025-05-13 13:49:24,377 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_pars-chargemigrationstep_0004.rmap 5.7 K bytes (76 / 204 files) (232.3 K / 741.0 K bytes)
2025-05-13 13:49:24,461 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_nrm_0005.rmap 663 bytes (77 / 204 files) (237.9 K / 741.0 K bytes)
2025-05-13 13:49:24,541 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_mask_0022.rmap 1.3 K bytes (78 / 204 files) (238.6 K / 741.0 K bytes)
2025-05-13 13:49:24,648 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_linearity_0022.rmap 961 bytes (79 / 204 files) (239.9 K / 741.0 K bytes)
2025-05-13 13:49:24,754 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_ipc_0007.rmap 651 bytes (80 / 204 files) (240.9 K / 741.0 K bytes)
2025-05-13 13:49:24,859 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_gain_0011.rmap 797 bytes (81 / 204 files) (241.5 K / 741.0 K bytes)
2025-05-13 13:49:24,942 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_flat_0023.rmap 5.9 K bytes (82 / 204 files) (242.3 K / 741.0 K bytes)
2025-05-13 13:49:25,028 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_filteroffset_0010.rmap 853 bytes (83 / 204 files) (248.2 K / 741.0 K bytes)
2025-05-13 13:49:25,113 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_extract1d_0007.rmap 905 bytes (84 / 204 files) (249.0 K / 741.0 K bytes)
2025-05-13 13:49:25,217 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_drizpars_0004.rmap 519 bytes (85 / 204 files) (249.9 K / 741.0 K bytes)
2025-05-13 13:49:25,301 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_distortion_0025.rmap 3.4 K bytes (86 / 204 files) (250.4 K / 741.0 K bytes)
2025-05-13 13:49:25,384 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_dark_0034.rmap 7.5 K bytes (87 / 204 files) (253.9 K / 741.0 K bytes)
2025-05-13 13:49:25,469 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_bkg_0002.rmap 2.9 K bytes (88 / 204 files) (261.4 K / 741.0 K bytes)
2025-05-13 13:49:25,552 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_area_0014.rmap 2.7 K bytes (89 / 204 files) (264.3 K / 741.0 K bytes)
2025-05-13 13:49:25,633 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_apcorr_0010.rmap 4.3 K bytes (90 / 204 files) (267.0 K / 741.0 K bytes)
2025-05-13 13:49:25,718 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_abvegaoffset_0004.rmap 1.4 K bytes (91 / 204 files) (271.3 K / 741.0 K bytes)
2025-05-13 13:49:25,800 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_niriss_0272.imap 5.8 K bytes (92 / 204 files) (272.7 K / 741.0 K bytes)
2025-05-13 13:49:25,884 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_wfssbkg_0004.rmap 7.2 K bytes (93 / 204 files) (278.5 K / 741.0 K bytes)
2025-05-13 13:49:25,970 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_wavelengthrange_0010.rmap 996 bytes (94 / 204 files) (285.7 K / 741.0 K bytes)
2025-05-13 13:49:26,052 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_tsophot_0003.rmap 896 bytes (95 / 204 files) (286.7 K / 741.0 K bytes)
2025-05-13 13:49:26,159 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_trappars_0003.rmap 1.6 K bytes (96 / 204 files) (287.6 K / 741.0 K bytes)
2025-05-13 13:49:26,241 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_trapdensity_0003.rmap 1.6 K bytes (97 / 204 files) (289.2 K / 741.0 K bytes)
2025-05-13 13:49:26,325 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_superbias_0019.rmap 18.9 K bytes (98 / 204 files) (290.8 K / 741.0 K bytes)
2025-05-13 13:49:26,431 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_specwcs_0022.rmap 7.1 K bytes (99 / 204 files) (309.7 K / 741.0 K bytes)
2025-05-13 13:49:26,514 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_sirskernel_0002.rmap 671 bytes (100 / 204 files) (316.8 K / 741.0 K bytes)
2025-05-13 13:49:26,596 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_saturation_0011.rmap 2.8 K bytes (101 / 204 files) (317.5 K / 741.0 K bytes)
2025-05-13 13:49:26,680 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_readnoise_0026.rmap 25.9 K bytes (102 / 204 files) (320.3 K / 741.0 K bytes)
2025-05-13 13:49:26,787 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_psfmask_0008.rmap 28.4 K bytes (103 / 204 files) (346.2 K / 741.0 K bytes)
2025-05-13 13:49:26,914 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_photom_0028.rmap 3.4 K bytes (104 / 204 files) (374.6 K / 741.0 K bytes)
2025-05-13 13:49:27,003 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_persat_0005.rmap 1.6 K bytes (105 / 204 files) (377.9 K / 741.0 K bytes)
2025-05-13 13:49:27,092 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_pars-whitelightstep_0004.rmap 2.0 K bytes (106 / 204 files) (379.5 K / 741.0 K bytes)
2025-05-13 13:49:27,174 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_pars-tweakregstep_0003.rmap 4.5 K bytes (107 / 204 files) (381.5 K / 741.0 K bytes)
2025-05-13 13:49:27,259 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_pars-spec2pipeline_0008.rmap 984 bytes (108 / 204 files) (386.0 K / 741.0 K bytes)
2025-05-13 13:49:27,367 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_pars-sourcecatalogstep_0002.rmap 4.6 K bytes (109 / 204 files) (387.0 K / 741.0 K bytes)
2025-05-13 13:49:27,449 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_pars-resamplestep_0002.rmap 687 bytes (110 / 204 files) (391.6 K / 741.0 K bytes)
2025-05-13 13:49:27,558 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_pars-outlierdetectionstep_0003.rmap 940 bytes (111 / 204 files) (392.3 K / 741.0 K bytes)
2025-05-13 13:49:27,645 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_pars-jumpstep_0005.rmap 806 bytes (112 / 204 files) (393.2 K / 741.0 K bytes)
2025-05-13 13:49:27,732 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_pars-image2pipeline_0004.rmap 1.1 K bytes (113 / 204 files) (394.0 K / 741.0 K bytes)
2025-05-13 13:49:27,838 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_pars-detector1pipeline_0005.rmap 1.3 K bytes (114 / 204 files) (395.2 K / 741.0 K bytes)
2025-05-13 13:49:27,920 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_pars-darkpipeline_0002.rmap 868 bytes (115 / 204 files) (396.4 K / 741.0 K bytes)
2025-05-13 13:49:28,003 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_pars-darkcurrentstep_0001.rmap 618 bytes (116 / 204 files) (397.3 K / 741.0 K bytes)
2025-05-13 13:49:28,107 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_mask_0012.rmap 4.1 K bytes (117 / 204 files) (397.9 K / 741.0 K bytes)
2025-05-13 13:49:28,189 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_linearity_0011.rmap 2.4 K bytes (118 / 204 files) (402.1 K / 741.0 K bytes)
2025-05-13 13:49:28,272 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_ipc_0003.rmap 2.0 K bytes (119 / 204 files) (404.5 K / 741.0 K bytes)
2025-05-13 13:49:28,356 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_gain_0016.rmap 2.1 K bytes (120 / 204 files) (406.4 K / 741.0 K bytes)
2025-05-13 13:49:28,462 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_flat_0028.rmap 51.7 K bytes (121 / 204 files) (408.6 K / 741.0 K bytes)
2025-05-13 13:49:28,586 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_filteroffset_0004.rmap 1.4 K bytes (122 / 204 files) (460.2 K / 741.0 K bytes)
2025-05-13 13:49:28,669 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_extract1d_0005.rmap 1.2 K bytes (123 / 204 files) (461.7 K / 741.0 K bytes)
2025-05-13 13:49:28,752 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_drizpars_0001.rmap 519 bytes (124 / 204 files) (462.9 K / 741.0 K bytes)
2025-05-13 13:49:28,862 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_distortion_0033.rmap 53.4 K bytes (125 / 204 files) (463.4 K / 741.0 K bytes)
2025-05-13 13:49:28,992 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_dark_0047.rmap 29.0 K bytes (126 / 204 files) (516.7 K / 741.0 K bytes)
2025-05-13 13:49:29,119 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_area_0012.rmap 33.5 K bytes (127 / 204 files) (545.7 K / 741.0 K bytes)
2025-05-13 13:49:29,226 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_apcorr_0008.rmap 4.3 K bytes (128 / 204 files) (579.2 K / 741.0 K bytes)
2025-05-13 13:49:29,310 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_abvegaoffset_0003.rmap 1.3 K bytes (129 / 204 files) (583.5 K / 741.0 K bytes)
2025-05-13 13:49:29,394 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_nircam_0314.imap 5.6 K bytes (130 / 204 files) (584.8 K / 741.0 K bytes)
2025-05-13 13:49:29,479 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_wavelengthrange_0027.rmap 929 bytes (131 / 204 files) (590.4 K / 741.0 K bytes)
2025-05-13 13:49:29,586 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_tsophot_0004.rmap 882 bytes (132 / 204 files) (591.3 K / 741.0 K bytes)
2025-05-13 13:49:29,669 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_straymask_0009.rmap 987 bytes (133 / 204 files) (592.2 K / 741.0 K bytes)
2025-05-13 13:49:29,774 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_specwcs_0043.rmap 5.8 K bytes (134 / 204 files) (593.2 K / 741.0 K bytes)
2025-05-13 13:49:29,886 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_saturation_0015.rmap 1.2 K bytes (135 / 204 files) (599.0 K / 741.0 K bytes)
2025-05-13 13:49:29,992 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_rscd_0008.rmap 1.0 K bytes (136 / 204 files) (600.1 K / 741.0 K bytes)
2025-05-13 13:49:30,075 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_resol_0006.rmap 790 bytes (137 / 204 files) (601.2 K / 741.0 K bytes)
2025-05-13 13:49:30,164 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_reset_0026.rmap 3.9 K bytes (138 / 204 files) (602.0 K / 741.0 K bytes)
2025-05-13 13:49:30,252 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_regions_0034.rmap 5.2 K bytes (139 / 204 files) (605.8 K / 741.0 K bytes)
2025-05-13 13:49:30,335 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_readnoise_0023.rmap 1.6 K bytes (140 / 204 files) (611.0 K / 741.0 K bytes)
2025-05-13 13:49:30,417 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_psfmask_0009.rmap 2.1 K bytes (141 / 204 files) (612.7 K / 741.0 K bytes)
2025-05-13 13:49:30,500 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_psf_0003.rmap 839 bytes (142 / 204 files) (614.8 K / 741.0 K bytes)
2025-05-13 13:49:30,583 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_photom_0056.rmap 3.7 K bytes (143 / 204 files) (615.6 K / 741.0 K bytes)
2025-05-13 13:49:30,690 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_pathloss_0005.rmap 866 bytes (144 / 204 files) (619.4 K / 741.0 K bytes)
2025-05-13 13:49:30,773 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_pars-whitelightstep_0003.rmap 912 bytes (145 / 204 files) (620.2 K / 741.0 K bytes)
2025-05-13 13:49:30,856 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_pars-tweakregstep_0003.rmap 1.8 K bytes (146 / 204 files) (621.2 K / 741.0 K bytes)
2025-05-13 13:49:30,942 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_pars-spec3pipeline_0009.rmap 816 bytes (147 / 204 files) (623.0 K / 741.0 K bytes)
2025-05-13 13:49:31,027 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_pars-spec2pipeline_0012.rmap 1.3 K bytes (148 / 204 files) (623.8 K / 741.0 K bytes)
2025-05-13 13:49:31,109 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_pars-sourcecatalogstep_0003.rmap 1.9 K bytes (149 / 204 files) (625.1 K / 741.0 K bytes)
2025-05-13 13:49:31,192 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_pars-resamplestep_0002.rmap 677 bytes (150 / 204 files) (627.0 K / 741.0 K bytes)
2025-05-13 13:49:31,276 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_pars-resamplespecstep_0002.rmap 706 bytes (151 / 204 files) (627.7 K / 741.0 K bytes)
2025-05-13 13:49:31,362 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_pars-outlierdetectionstep_0020.rmap 3.4 K bytes (152 / 204 files) (628.4 K / 741.0 K bytes)
2025-05-13 13:49:31,452 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_pars-jumpstep_0011.rmap 1.6 K bytes (153 / 204 files) (631.8 K / 741.0 K bytes)
2025-05-13 13:49:31,533 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_pars-image2pipeline_0010.rmap 1.1 K bytes (154 / 204 files) (633.4 K / 741.0 K bytes)
2025-05-13 13:49:31,617 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_pars-extract1dstep_0003.rmap 807 bytes (155 / 204 files) (634.5 K / 741.0 K bytes)
2025-05-13 13:49:31,701 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_pars-emicorrstep_0003.rmap 796 bytes (156 / 204 files) (635.3 K / 741.0 K bytes)
2025-05-13 13:49:31,805 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_pars-detector1pipeline_0010.rmap 1.6 K bytes (157 / 204 files) (636.1 K / 741.0 K bytes)
2025-05-13 13:49:31,912 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_pars-darkpipeline_0002.rmap 860 bytes (158 / 204 files) (637.7 K / 741.0 K bytes)
2025-05-13 13:49:31,994 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_pars-darkcurrentstep_0002.rmap 683 bytes (159 / 204 files) (638.5 K / 741.0 K bytes)
2025-05-13 13:49:32,099 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_mrsxartcorr_0002.rmap 2.2 K bytes (160 / 204 files) (639.2 K / 741.0 K bytes)
2025-05-13 13:49:32,204 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_mrsptcorr_0005.rmap 2.0 K bytes (161 / 204 files) (641.4 K / 741.0 K bytes)
2025-05-13 13:49:32,287 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_mask_0026.rmap 4.3 K bytes (162 / 204 files) (643.3 K / 741.0 K bytes)
2025-05-13 13:49:32,373 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_linearity_0018.rmap 2.8 K bytes (163 / 204 files) (647.6 K / 741.0 K bytes)
2025-05-13 13:49:32,481 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_ipc_0008.rmap 700 bytes (164 / 204 files) (650.4 K / 741.0 K bytes)
2025-05-13 13:49:32,563 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_gain_0013.rmap 3.9 K bytes (165 / 204 files) (651.1 K / 741.0 K bytes)
2025-05-13 13:49:32,657 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_fringefreq_0003.rmap 1.4 K bytes (166 / 204 files) (655.0 K / 741.0 K bytes)
2025-05-13 13:49:32,740 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_fringe_0019.rmap 3.9 K bytes (167 / 204 files) (656.5 K / 741.0 K bytes)
2025-05-13 13:49:32,845 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_flat_0066.rmap 15.7 K bytes (168 / 204 files) (660.4 K / 741.0 K bytes)
2025-05-13 13:49:32,976 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_filteroffset_0025.rmap 2.5 K bytes (169 / 204 files) (676.1 K / 741.0 K bytes)
2025-05-13 13:49:33,061 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_extract1d_0020.rmap 1.4 K bytes (170 / 204 files) (678.6 K / 741.0 K bytes)
2025-05-13 13:49:33,148 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_emicorr_0003.rmap 663 bytes (171 / 204 files) (679.9 K / 741.0 K bytes)
2025-05-13 13:49:33,232 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_drizpars_0002.rmap 511 bytes (172 / 204 files) (680.6 K / 741.0 K bytes)
2025-05-13 13:49:33,314 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_distortion_0040.rmap 4.9 K bytes (173 / 204 files) (681.1 K / 741.0 K bytes)
2025-05-13 13:49:33,397 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_dark_0036.rmap 4.4 K bytes (174 / 204 files) (686.0 K / 741.0 K bytes)
2025-05-13 13:49:33,479 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_cubepar_0017.rmap 800 bytes (175 / 204 files) (690.4 K / 741.0 K bytes)
2025-05-13 13:49:33,585 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_area_0015.rmap 866 bytes (176 / 204 files) (691.2 K / 741.0 K bytes)
2025-05-13 13:49:33,667 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_apcorr_0019.rmap 5.0 K bytes (177 / 204 files) (692.0 K / 741.0 K bytes)
2025-05-13 13:49:33,776 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_abvegaoffset_0003.rmap 1.3 K bytes (178 / 204 files) (697.0 K / 741.0 K bytes)
2025-05-13 13:49:33,858 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_miri_0437.imap 5.8 K bytes (179 / 204 files) (698.3 K / 741.0 K bytes)
2025-05-13 13:49:33,939 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_fgs_trappars_0004.rmap 903 bytes (180 / 204 files) (704.1 K / 741.0 K bytes)
2025-05-13 13:49:34,021 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_fgs_trapdensity_0006.rmap 930 bytes (181 / 204 files) (705.0 K / 741.0 K bytes)
2025-05-13 13:49:34,106 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_fgs_superbias_0017.rmap 3.8 K bytes (182 / 204 files) (706.0 K / 741.0 K bytes)
2025-05-13 13:49:34,193 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_fgs_saturation_0009.rmap 779 bytes (183 / 204 files) (709.7 K / 741.0 K bytes)
2025-05-13 13:49:34,300 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_fgs_readnoise_0014.rmap 1.3 K bytes (184 / 204 files) (710.5 K / 741.0 K bytes)
2025-05-13 13:49:34,406 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_fgs_photom_0014.rmap 1.1 K bytes (185 / 204 files) (711.8 K / 741.0 K bytes)
2025-05-13 13:49:34,518 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_fgs_persat_0006.rmap 884 bytes (186 / 204 files) (712.9 K / 741.0 K bytes)
2025-05-13 13:49:34,625 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_fgs_pars-tweakregstep_0002.rmap 850 bytes (187 / 204 files) (713.8 K / 741.0 K bytes)
2025-05-13 13:49:34,708 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_fgs_pars-sourcecatalogstep_0001.rmap 636 bytes (188 / 204 files) (714.6 K / 741.0 K bytes)
2025-05-13 13:49:34,791 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_fgs_pars-outlierdetectionstep_0001.rmap 654 bytes (189 / 204 files) (715.3 K / 741.0 K bytes)
2025-05-13 13:49:34,874 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_fgs_pars-image2pipeline_0005.rmap 974 bytes (190 / 204 files) (715.9 K / 741.0 K bytes)
2025-05-13 13:49:34,957 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_fgs_pars-detector1pipeline_0002.rmap 1.0 K bytes (191 / 204 files) (716.9 K / 741.0 K bytes)
2025-05-13 13:49:35,038 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_fgs_pars-darkpipeline_0002.rmap 856 bytes (192 / 204 files) (717.9 K / 741.0 K bytes)
2025-05-13 13:49:35,122 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_fgs_mask_0023.rmap 1.1 K bytes (193 / 204 files) (718.8 K / 741.0 K bytes)
2025-05-13 13:49:35,205 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_fgs_linearity_0015.rmap 925 bytes (194 / 204 files) (719.8 K / 741.0 K bytes)
2025-05-13 13:49:35,293 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_fgs_ipc_0003.rmap 614 bytes (195 / 204 files) (720.8 K / 741.0 K bytes)
2025-05-13 13:49:35,374 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_fgs_gain_0010.rmap 890 bytes (196 / 204 files) (721.4 K / 741.0 K bytes)
2025-05-13 13:49:35,457 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_fgs_flat_0009.rmap 1.1 K bytes (197 / 204 files) (722.3 K / 741.0 K bytes)
2025-05-13 13:49:35,541 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_fgs_distortion_0011.rmap 1.2 K bytes (198 / 204 files) (723.4 K / 741.0 K bytes)
2025-05-13 13:49:35,625 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_fgs_dark_0017.rmap 4.3 K bytes (199 / 204 files) (724.6 K / 741.0 K bytes)
2025-05-13 13:49:35,712 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_fgs_area_0010.rmap 1.2 K bytes (200 / 204 files) (728.9 K / 741.0 K bytes)
2025-05-13 13:49:35,796 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_fgs_apcorr_0004.rmap 4.0 K bytes (201 / 204 files) (730.1 K / 741.0 K bytes)
2025-05-13 13:49:35,901 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_fgs_abvegaoffset_0002.rmap 1.3 K bytes (202 / 204 files) (734.0 K / 741.0 K bytes)
2025-05-13 13:49:35,982 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_fgs_0123.imap 5.1 K bytes (203 / 204 files) (735.3 K / 741.0 K bytes)
2025-05-13 13:49:36,067 - CRDS - INFO - Fetching /home/runner/crds/mappings/jwst/jwst_1364.pmap 580 bytes (204 / 204 files) (740.4 K / 741.0 K bytes)
2025-05-13 13:49:36,443 - CRDS - ERROR - Error determining best reference for 'pars-darkcurrentstep' = No match found.
2025-05-13 13:49:36,447 - CRDS - INFO - Fetching /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-chargemigrationstep_0018.asdf 1.1 K bytes (1 / 1 files) (0 / 1.1 K bytes)
2025-05-13 13:49:36,538 - stpipe - INFO - PARS-CHARGEMIGRATIONSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-chargemigrationstep_0018.asdf
2025-05-13 13:49:36,548 - CRDS - INFO - Fetching /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-jumpstep_0087.asdf 1.6 K bytes (1 / 1 files) (0 / 1.6 K bytes)
2025-05-13 13:49:36,634 - stpipe - INFO - PARS-JUMPSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-jumpstep_0087.asdf
2025-05-13 13:49:36,645 - CRDS - INFO - Fetching /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-detector1pipeline_0001.asdf 1.1 K bytes (1 / 1 files) (0 / 1.1 K bytes)
2025-05-13 13:49:36,755 - stpipe - INFO - PARS-DETECTOR1PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-detector1pipeline_0001.asdf
2025-05-13 13:49:36,772 - stpipe.Detector1Pipeline - INFO - Detector1Pipeline instance created.
2025-05-13 13:49:36,773 - stpipe.Detector1Pipeline.group_scale - INFO - GroupScaleStep instance created.
2025-05-13 13:49:36,774 - stpipe.Detector1Pipeline.dq_init - INFO - DQInitStep instance created.
2025-05-13 13:49:36,775 - stpipe.Detector1Pipeline.emicorr - INFO - EmiCorrStep instance created.
2025-05-13 13:49:36,777 - stpipe.Detector1Pipeline.saturation - INFO - SaturationStep instance created.
2025-05-13 13:49:36,779 - stpipe.Detector1Pipeline.ipc - INFO - IPCStep instance created.
2025-05-13 13:49:36,780 - stpipe.Detector1Pipeline.superbias - INFO - SuperBiasStep instance created.
2025-05-13 13:49:36,781 - stpipe.Detector1Pipeline.refpix - INFO - RefPixStep instance created.
2025-05-13 13:49:36,782 - stpipe.Detector1Pipeline.rscd - INFO - RscdStep instance created.
2025-05-13 13:49:36,783 - stpipe.Detector1Pipeline.firstframe - INFO - FirstFrameStep instance created.
2025-05-13 13:49:36,784 - stpipe.Detector1Pipeline.lastframe - INFO - LastFrameStep instance created.
2025-05-13 13:49:36,785 - stpipe.Detector1Pipeline.linearity - INFO - LinearityStep instance created.
2025-05-13 13:49:36,786 - stpipe.Detector1Pipeline.dark_current - INFO - DarkCurrentStep instance created.
2025-05-13 13:49:36,787 - stpipe.Detector1Pipeline.reset - INFO - ResetStep instance created.
2025-05-13 13:49:36,788 - stpipe.Detector1Pipeline.persistence - INFO - PersistenceStep instance created.
2025-05-13 13:49:36,789 - stpipe.Detector1Pipeline.charge_migration - INFO - ChargeMigrationStep instance created.
2025-05-13 13:49:36,790 - stpipe.Detector1Pipeline.jump - INFO - JumpStep instance created.
2025-05-13 13:49:36,792 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - CleanFlickerNoiseStep instance created.
2025-05-13 13:49:36,793 - stpipe.Detector1Pipeline.ramp_fit - INFO - RampFitStep instance created.
2025-05-13 13:49:36,794 - stpipe.Detector1Pipeline.gain_scale - INFO - GainScaleStep instance created.
2025-05-13 13:49:36,914 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline running with args ('./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00001_nis_uncal.fits',).
2025-05-13 13:49:36,936 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage1
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_calibrated_ramp: False
steps:
group_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dq_init:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
emicorr:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
algorithm: sequential
nints_to_phase: None
nbins: None
scale_reference: True
onthefly_corr_freq: None
use_n_cycles: 3
fit_ints_separately: False
user_supplied_reffile: None
save_intermediate_results: False
saturation:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
n_pix_grow_sat: 1
use_readpatt: True
ipc:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
superbias:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
refpix:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
odd_even_columns: True
use_side_ref_pixels: True
side_smoothing_length: 11
side_gain: 1.0
odd_even_rows: True
ovr_corr_mitigation_ftr: 3.0
preserve_irs2_refpix: False
irs2_mean_subtraction: False
refpix_algorithm: median
sigreject: 4.0
gaussmooth: 1.0
halfwidth: 30
rscd:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
type: baseline
firstframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
bright_use_group1: False
lastframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
linearity:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_current:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_output: None
average_dark_current: None
reset:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
persistence:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
input_trapsfilled: ''
flag_pers_cutoff: 40.0
save_persistence: False
save_trapsfilled: True
modify_input: False
charge_migration:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
signal_threshold: 21864.0
jump:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
rejection_threshold: 8.0
three_group_rejection_threshold: 6.0
four_group_rejection_threshold: 5.0
maximum_cores: half
flag_4_neighbors: False
max_jump_to_flag_neighbors: 200.0
min_jump_to_flag_neighbors: 10.0
after_jump_flag_dn1: 1000
after_jump_flag_time1: 90
after_jump_flag_dn2: 0
after_jump_flag_time2: 0
expand_large_events: True
min_sat_area: 5
min_jump_area: 15.0
expand_factor: 1.75
use_ellipses: False
sat_required_snowball: True
min_sat_radius_extend: 5.0
sat_expand: 0
edge_size: 20
mask_snowball_core_next_int: True
snowball_time_masked_next_int: 4000
find_showers: False
max_shower_amplitude: 4.0
extend_snr_threshold: 1.2
extend_min_area: 90
extend_inner_radius: 1.0
extend_outer_radius: 2.6
extend_ellipse_expand_ratio: 1.1
time_masked_after_shower: 15.0
min_diffs_single_pass: 10
max_extended_radius: 100
minimum_groups: 3
minimum_sigclip_groups: 100
only_use_ints: True
clean_flicker_noise:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
fit_method: median
fit_by_channel: False
background_method: median
background_box_size: None
mask_science_regions: False
apply_flat_field: False
n_sigma: 2.0
fit_histogram: False
single_mask: True
user_mask: None
save_mask: False
save_background: False
save_noise: False
ramp_fit:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
algorithm: OLS_C
int_name: ''
save_opt: False
opt_name: ''
suppress_one_group: True
firstgroup: None
lastgroup: None
maximum_cores: '1'
gain_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
2025-05-13 13:49:37,057 - stpipe.Detector1Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00001_nis_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'sirskernel', 'superbias']
2025-05-13 13:49:37,060 - CRDS - INFO - Fetching /home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits 1.0 G bytes (1 / 7 files) (0 / 1.4 G bytes)
2025-05-13 13:51:43,008 - CRDS - INFO - Fetching /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits 16.8 M bytes (2 / 7 files) (1.0 G / 1.4 G bytes)
2025-05-13 13:51:45,396 - CRDS - INFO - Fetching /home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits 205.5 M bytes (3 / 7 files) (1.0 G / 1.4 G bytes)
2025-05-13 13:51:59,756 - CRDS - INFO - Fetching /home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits 16.8 M bytes (4 / 7 files) (1.2 G / 1.4 G bytes)
2025-05-13 13:52:00,162 - CRDS - INFO - Fetching /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits 16.8 M bytes (5 / 7 files) (1.3 G / 1.4 G bytes)
2025-05-13 13:52:00,669 - CRDS - INFO - Fetching /home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits 33.6 M bytes (6 / 7 files) (1.3 G / 1.4 G bytes)
2025-05-13 13:52:01,267 - CRDS - INFO - Fetching /home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits 50.4 M bytes (7 / 7 files) (1.3 G / 1.4 G bytes)
2025-05-13 13:52:05,110 - stpipe.Detector1Pipeline - INFO - Prefetch for DARK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits'.
2025-05-13 13:52:05,110 - stpipe.Detector1Pipeline - INFO - Prefetch for GAIN reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits'.
2025-05-13 13:52:05,111 - stpipe.Detector1Pipeline - INFO - Prefetch for LINEARITY reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits'.
2025-05-13 13:52:05,111 - stpipe.Detector1Pipeline - INFO - Prefetch for MASK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits'.
2025-05-13 13:52:05,112 - stpipe.Detector1Pipeline - INFO - Prefetch for READNOISE reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits'.
2025-05-13 13:52:05,112 - stpipe.Detector1Pipeline - INFO - Prefetch for REFPIX reference file is 'N/A'.
2025-05-13 13:52:05,113 - stpipe.Detector1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'.
2025-05-13 13:52:05,113 - stpipe.Detector1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'.
2025-05-13 13:52:05,114 - stpipe.Detector1Pipeline - INFO - Prefetch for SATURATION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits'.
2025-05-13 13:52:05,114 - stpipe.Detector1Pipeline - INFO - Prefetch for SIRSKERNEL reference file is 'N/A'.
2025-05-13 13:52:05,115 - stpipe.Detector1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits'.
2025-05-13 13:52:05,116 - stpipe.Detector1Pipeline - INFO - Starting calwebb_detector1 ...
2025-05-13 13:52:05,468 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00001_nis_uncal.fits>,).
2025-05-13 13:52:05,475 - stpipe.Detector1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed
2025-05-13 13:52:05,476 - stpipe.Detector1Pipeline.group_scale - INFO - Step will be skipped
2025-05-13 13:52:05,477 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale done
2025-05-13 13:52:05,598 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00001_nis_uncal.fits>,).
2025-05-13 13:52:05,615 - stpipe.Detector1Pipeline.dq_init - INFO - Using MASK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits
2025-05-13 13:52:05,845 - CRDS - INFO - Calibration SW Found: jwst 1.18.0 (/usr/share/miniconda/lib/python3.13/site-packages/jwst-1.18.0.dist-info)
2025-05-13 13:52:05,949 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init done
2025-05-13 13:52:06,087 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00001_nis_uncal.fits>,).
2025-05-13 13:52:06,105 - stpipe.Detector1Pipeline.saturation - INFO - Using SATURATION reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits
2025-05-13 13:52:06,135 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:52:06,136 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:52:06,143 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:52:06,197 - stpipe.Detector1Pipeline.saturation - INFO - Using read_pattern with nframes 4
2025-05-13 13:52:07,331 - stpipe.Detector1Pipeline.saturation - INFO - Detected 4223 saturated pixels
2025-05-13 13:52:07,362 - stpipe.Detector1Pipeline.saturation - INFO - Detected 1 A/D floor pixels
2025-05-13 13:52:07,367 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation done
2025-05-13 13:52:07,502 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00001_nis_uncal.fits>,).
2025-05-13 13:52:07,503 - stpipe.Detector1Pipeline.ipc - INFO - Step skipped.
2025-05-13 13:52:07,635 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00001_nis_uncal.fits>,).
2025-05-13 13:52:07,656 - stpipe.Detector1Pipeline.superbias - INFO - Using SUPERBIAS reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits
2025-05-13 13:52:07,924 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias done
2025-05-13 13:52:08,069 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00001_nis_uncal.fits>,).
2025-05-13 13:52:08,135 - stpipe.Detector1Pipeline.refpix - INFO - NIR full frame data
2025-05-13 13:52:08,136 - stpipe.Detector1Pipeline.refpix - INFO - The following parameters are valid for this mode:
2025-05-13 13:52:08,137 - stpipe.Detector1Pipeline.refpix - INFO - use_side_ref_pixels = True
2025-05-13 13:52:08,137 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_columns = True
2025-05-13 13:52:08,138 - stpipe.Detector1Pipeline.refpix - INFO - side_smoothing_length = 11
2025-05-13 13:52:08,138 - stpipe.Detector1Pipeline.refpix - INFO - side_gain = 1.0
2025-05-13 13:52:08,139 - stpipe.Detector1Pipeline.refpix - INFO - The following parameter is not applicable and is ignored:
2025-05-13 13:52:08,139 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_rows = False
2025-05-13 13:52:12,310 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix done
2025-05-13 13:52:12,457 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00001_nis_uncal.fits>,).
2025-05-13 13:52:12,478 - stpipe.Detector1Pipeline.linearity - INFO - Using Linearity reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits
2025-05-13 13:52:12,529 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:52:12,530 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:52:12,538 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:52:13,300 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity done
2025-05-13 13:52:13,442 - stpipe.Detector1Pipeline.persistence - INFO - Step persistence running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00001_nis_uncal.fits>,).
2025-05-13 13:52:13,443 - stpipe.Detector1Pipeline.persistence - INFO - Step skipped.
2025-05-13 13:52:13,572 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00001_nis_uncal.fits>,).
2025-05-13 13:52:13,592 - stpipe.Detector1Pipeline.dark_current - INFO - Using DARK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits
2025-05-13 13:52:13,825 - stpipe.Detector1Pipeline.dark_current - INFO - Science data nints=1, ngroups=16, nframes=4, groupgap=0
2025-05-13 13:52:13,825 - stpipe.Detector1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=30, nframes=4, groupgap=0
2025-05-13 13:52:14,044 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current done
2025-05-13 13:52:14,194 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00001_nis_uncal.fits>,).
2025-05-13 13:52:14,249 - stpipe.Detector1Pipeline.charge_migration - INFO - Using signal_threshold: 21864.00
2025-05-13 13:52:14,771 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration done
2025-05-13 13:52:14,915 - stpipe.Detector1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00001_nis_uncal.fits>,).
2025-05-13 13:52:14,923 - stpipe.Detector1Pipeline.jump - INFO - CR rejection threshold = 8 sigma
2025-05-13 13:52:14,924 - stpipe.Detector1Pipeline.jump - INFO - Maximum cores to use = half
2025-05-13 13:52:14,991 - stpipe.Detector1Pipeline.jump - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:52:15,000 - stpipe.Detector1Pipeline.jump - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:52:15,167 - stpipe.Detector1Pipeline.jump - INFO - Executing two-point difference method
2025-05-13 13:52:15,168 - stpipe.Detector1Pipeline.jump - INFO - Creating 2 processes for jump detection
2025-05-13 13:52:18,831 - stpipe.Detector1Pipeline.jump - INFO - Flagging Snowballs
2025-05-13 13:52:19,052 - stpipe.Detector1Pipeline.jump - INFO - Total snowballs = 34
2025-05-13 13:52:19,053 - stpipe.Detector1Pipeline.jump - INFO - Total elapsed time = 3.88494 sec
2025-05-13 13:52:19,125 - stpipe.Detector1Pipeline.jump - INFO - The execution time in seconds: 4.201902
2025-05-13 13:52:19,129 - stpipe.Detector1Pipeline.jump - INFO - Step jump done
2025-05-13 13:52:19,267 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step clean_flicker_noise running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00001_nis_uncal.fits>,).
2025-05-13 13:52:19,267 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step skipped.
2025-05-13 13:52:19,389 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00001_nis_uncal.fits>,).
2025-05-13 13:52:19,473 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:52:19,474 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:52:19,498 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using algorithm = OLS_C
2025-05-13 13:52:19,498 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using weighting = optimal
2025-05-13 13:52:20,070 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of multiprocessing slices: 1
2025-05-13 13:52:25,421 - stpipe.Detector1Pipeline.ramp_fit - INFO - Ramp Fitting C Time: 5.345947265625
2025-05-13 13:52:25,474 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit done
2025-05-13 13:52:25,821 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(2048, 2048) from jw01475006001_02201_00001_nis_uncal.fits>,).
2025-05-13 13:52:25,919 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:52:25,921 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:52:25,930 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:52:26,391 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 2048, 2048) from jw01475006001_02201_00001_nis_uncal.fits>,).
2025-05-13 13:52:26,416 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:52:26,417 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:52:26,419 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:52:26,527 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00001_nis_rateints.fits
2025-05-13 13:52:26,528 - stpipe.Detector1Pipeline - INFO - ... ending calwebb_detector1
2025-05-13 13:52:26,530 - stpipe.Detector1Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:52:26,641 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00001_nis_rate.fits
2025-05-13 13:52:26,642 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline done
2025-05-13 13:52:26,642 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:52:26,762 - CRDS - ERROR - Error determining best reference for 'pars-darkcurrentstep' = No match found.
2025-05-13 13:52:26,765 - stpipe - INFO - PARS-CHARGEMIGRATIONSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-chargemigrationstep_0018.asdf
2025-05-13 13:52:26,773 - stpipe - INFO - PARS-JUMPSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-jumpstep_0087.asdf
2025-05-13 13:52:26,783 - stpipe - INFO - PARS-DETECTOR1PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-detector1pipeline_0001.asdf
2025-05-13 13:52:26,800 - stpipe.Detector1Pipeline - INFO - Detector1Pipeline instance created.
2025-05-13 13:52:26,801 - stpipe.Detector1Pipeline.group_scale - INFO - GroupScaleStep instance created.
2025-05-13 13:52:26,802 - stpipe.Detector1Pipeline.dq_init - INFO - DQInitStep instance created.
2025-05-13 13:52:26,803 - stpipe.Detector1Pipeline.emicorr - INFO - EmiCorrStep instance created.
2025-05-13 13:52:26,804 - stpipe.Detector1Pipeline.saturation - INFO - SaturationStep instance created.
2025-05-13 13:52:26,805 - stpipe.Detector1Pipeline.ipc - INFO - IPCStep instance created.
2025-05-13 13:52:26,805 - stpipe.Detector1Pipeline.superbias - INFO - SuperBiasStep instance created.
2025-05-13 13:52:26,807 - stpipe.Detector1Pipeline.refpix - INFO - RefPixStep instance created.
2025-05-13 13:52:26,808 - stpipe.Detector1Pipeline.rscd - INFO - RscdStep instance created.
2025-05-13 13:52:26,809 - stpipe.Detector1Pipeline.firstframe - INFO - FirstFrameStep instance created.
2025-05-13 13:52:26,809 - stpipe.Detector1Pipeline.lastframe - INFO - LastFrameStep instance created.
2025-05-13 13:52:26,810 - stpipe.Detector1Pipeline.linearity - INFO - LinearityStep instance created.
2025-05-13 13:52:26,811 - stpipe.Detector1Pipeline.dark_current - INFO - DarkCurrentStep instance created.
2025-05-13 13:52:26,812 - stpipe.Detector1Pipeline.reset - INFO - ResetStep instance created.
2025-05-13 13:52:26,813 - stpipe.Detector1Pipeline.persistence - INFO - PersistenceStep instance created.
2025-05-13 13:52:26,814 - stpipe.Detector1Pipeline.charge_migration - INFO - ChargeMigrationStep instance created.
2025-05-13 13:52:26,817 - stpipe.Detector1Pipeline.jump - INFO - JumpStep instance created.
2025-05-13 13:52:26,819 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - CleanFlickerNoiseStep instance created.
2025-05-13 13:52:26,820 - stpipe.Detector1Pipeline.ramp_fit - INFO - RampFitStep instance created.
2025-05-13 13:52:26,821 - stpipe.Detector1Pipeline.gain_scale - INFO - GainScaleStep instance created.
2025-05-13 13:52:26,965 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline running with args ('./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00002_nis_uncal.fits',).
2025-05-13 13:52:26,985 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage1
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_calibrated_ramp: False
steps:
group_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dq_init:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
emicorr:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
algorithm: sequential
nints_to_phase: None
nbins: None
scale_reference: True
onthefly_corr_freq: None
use_n_cycles: 3
fit_ints_separately: False
user_supplied_reffile: None
save_intermediate_results: False
saturation:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
n_pix_grow_sat: 1
use_readpatt: True
ipc:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
superbias:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
refpix:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
odd_even_columns: True
use_side_ref_pixels: True
side_smoothing_length: 11
side_gain: 1.0
odd_even_rows: True
ovr_corr_mitigation_ftr: 3.0
preserve_irs2_refpix: False
irs2_mean_subtraction: False
refpix_algorithm: median
sigreject: 4.0
gaussmooth: 1.0
halfwidth: 30
rscd:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
type: baseline
firstframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
bright_use_group1: False
lastframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
linearity:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_current:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_output: None
average_dark_current: None
reset:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
persistence:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
input_trapsfilled: ''
flag_pers_cutoff: 40.0
save_persistence: False
save_trapsfilled: True
modify_input: False
charge_migration:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
signal_threshold: 21864.0
jump:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
rejection_threshold: 8.0
three_group_rejection_threshold: 6.0
four_group_rejection_threshold: 5.0
maximum_cores: half
flag_4_neighbors: False
max_jump_to_flag_neighbors: 200.0
min_jump_to_flag_neighbors: 10.0
after_jump_flag_dn1: 1000
after_jump_flag_time1: 90
after_jump_flag_dn2: 0
after_jump_flag_time2: 0
expand_large_events: True
min_sat_area: 5
min_jump_area: 15.0
expand_factor: 1.75
use_ellipses: False
sat_required_snowball: True
min_sat_radius_extend: 5.0
sat_expand: 0
edge_size: 20
mask_snowball_core_next_int: True
snowball_time_masked_next_int: 4000
find_showers: False
max_shower_amplitude: 4.0
extend_snr_threshold: 1.2
extend_min_area: 90
extend_inner_radius: 1.0
extend_outer_radius: 2.6
extend_ellipse_expand_ratio: 1.1
time_masked_after_shower: 15.0
min_diffs_single_pass: 10
max_extended_radius: 100
minimum_groups: 3
minimum_sigclip_groups: 100
only_use_ints: True
clean_flicker_noise:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
fit_method: median
fit_by_channel: False
background_method: median
background_box_size: None
mask_science_regions: False
apply_flat_field: False
n_sigma: 2.0
fit_histogram: False
single_mask: True
user_mask: None
save_mask: False
save_background: False
save_noise: False
ramp_fit:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
algorithm: OLS_C
int_name: ''
save_opt: False
opt_name: ''
suppress_one_group: True
firstgroup: None
lastgroup: None
maximum_cores: '1'
gain_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
2025-05-13 13:52:27,098 - stpipe.Detector1Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00002_nis_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'sirskernel', 'superbias']
2025-05-13 13:52:27,101 - stpipe.Detector1Pipeline - INFO - Prefetch for DARK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits'.
2025-05-13 13:52:27,102 - stpipe.Detector1Pipeline - INFO - Prefetch for GAIN reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits'.
2025-05-13 13:52:27,103 - stpipe.Detector1Pipeline - INFO - Prefetch for LINEARITY reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits'.
2025-05-13 13:52:27,103 - stpipe.Detector1Pipeline - INFO - Prefetch for MASK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits'.
2025-05-13 13:52:27,104 - stpipe.Detector1Pipeline - INFO - Prefetch for READNOISE reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits'.
2025-05-13 13:52:27,104 - stpipe.Detector1Pipeline - INFO - Prefetch for REFPIX reference file is 'N/A'.
2025-05-13 13:52:27,105 - stpipe.Detector1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'.
2025-05-13 13:52:27,105 - stpipe.Detector1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'.
2025-05-13 13:52:27,105 - stpipe.Detector1Pipeline - INFO - Prefetch for SATURATION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits'.
2025-05-13 13:52:27,106 - stpipe.Detector1Pipeline - INFO - Prefetch for SIRSKERNEL reference file is 'N/A'.
2025-05-13 13:52:27,107 - stpipe.Detector1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits'.
2025-05-13 13:52:27,108 - stpipe.Detector1Pipeline - INFO - Starting calwebb_detector1 ...
2025-05-13 13:52:27,443 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00002_nis_uncal.fits>,).
2025-05-13 13:52:27,450 - stpipe.Detector1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed
2025-05-13 13:52:27,451 - stpipe.Detector1Pipeline.group_scale - INFO - Step will be skipped
2025-05-13 13:52:27,453 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale done
2025-05-13 13:52:27,595 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00002_nis_uncal.fits>,).
2025-05-13 13:52:27,612 - stpipe.Detector1Pipeline.dq_init - INFO - Using MASK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits
2025-05-13 13:52:27,820 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init done
2025-05-13 13:52:27,972 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00002_nis_uncal.fits>,).
2025-05-13 13:52:27,986 - stpipe.Detector1Pipeline.saturation - INFO - Using SATURATION reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits
2025-05-13 13:52:28,011 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:52:28,012 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:52:28,016 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:52:28,064 - stpipe.Detector1Pipeline.saturation - INFO - Using read_pattern with nframes 4
2025-05-13 13:52:28,969 - stpipe.Detector1Pipeline.saturation - INFO - Detected 4249 saturated pixels
2025-05-13 13:52:28,999 - stpipe.Detector1Pipeline.saturation - INFO - Detected 1 A/D floor pixels
2025-05-13 13:52:29,004 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation done
2025-05-13 13:52:29,142 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00002_nis_uncal.fits>,).
2025-05-13 13:52:29,143 - stpipe.Detector1Pipeline.ipc - INFO - Step skipped.
2025-05-13 13:52:29,277 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00002_nis_uncal.fits>,).
2025-05-13 13:52:29,292 - stpipe.Detector1Pipeline.superbias - INFO - Using SUPERBIAS reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits
2025-05-13 13:52:29,550 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias done
2025-05-13 13:52:29,684 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00002_nis_uncal.fits>,).
2025-05-13 13:52:29,738 - stpipe.Detector1Pipeline.refpix - INFO - NIR full frame data
2025-05-13 13:52:29,739 - stpipe.Detector1Pipeline.refpix - INFO - The following parameters are valid for this mode:
2025-05-13 13:52:29,739 - stpipe.Detector1Pipeline.refpix - INFO - use_side_ref_pixels = True
2025-05-13 13:52:29,740 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_columns = True
2025-05-13 13:52:29,740 - stpipe.Detector1Pipeline.refpix - INFO - side_smoothing_length = 11
2025-05-13 13:52:29,741 - stpipe.Detector1Pipeline.refpix - INFO - side_gain = 1.0
2025-05-13 13:52:29,741 - stpipe.Detector1Pipeline.refpix - INFO - The following parameter is not applicable and is ignored:
2025-05-13 13:52:29,742 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_rows = False
2025-05-13 13:52:33,656 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix done
2025-05-13 13:52:33,790 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00002_nis_uncal.fits>,).
2025-05-13 13:52:33,805 - stpipe.Detector1Pipeline.linearity - INFO - Using Linearity reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits
2025-05-13 13:52:33,847 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:52:33,848 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:52:33,851 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:52:34,527 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity done
2025-05-13 13:52:34,661 - stpipe.Detector1Pipeline.persistence - INFO - Step persistence running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00002_nis_uncal.fits>,).
2025-05-13 13:52:34,661 - stpipe.Detector1Pipeline.persistence - INFO - Step skipped.
2025-05-13 13:52:34,781 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00002_nis_uncal.fits>,).
2025-05-13 13:52:34,797 - stpipe.Detector1Pipeline.dark_current - INFO - Using DARK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits
2025-05-13 13:52:35,032 - stpipe.Detector1Pipeline.dark_current - INFO - Science data nints=1, ngroups=16, nframes=4, groupgap=0
2025-05-13 13:52:35,033 - stpipe.Detector1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=30, nframes=4, groupgap=0
2025-05-13 13:52:35,252 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current done
2025-05-13 13:52:35,411 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00002_nis_uncal.fits>,).
2025-05-13 13:52:35,466 - stpipe.Detector1Pipeline.charge_migration - INFO - Using signal_threshold: 21864.00
2025-05-13 13:52:35,990 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration done
2025-05-13 13:52:36,132 - stpipe.Detector1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00002_nis_uncal.fits>,).
2025-05-13 13:52:36,139 - stpipe.Detector1Pipeline.jump - INFO - CR rejection threshold = 8 sigma
2025-05-13 13:52:36,140 - stpipe.Detector1Pipeline.jump - INFO - Maximum cores to use = half
2025-05-13 13:52:36,196 - stpipe.Detector1Pipeline.jump - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:52:36,204 - stpipe.Detector1Pipeline.jump - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:52:36,366 - stpipe.Detector1Pipeline.jump - INFO - Executing two-point difference method
2025-05-13 13:52:36,367 - stpipe.Detector1Pipeline.jump - INFO - Creating 2 processes for jump detection
2025-05-13 13:52:40,073 - stpipe.Detector1Pipeline.jump - INFO - Flagging Snowballs
2025-05-13 13:52:40,271 - stpipe.Detector1Pipeline.jump - INFO - Total snowballs = 39
2025-05-13 13:52:40,272 - stpipe.Detector1Pipeline.jump - INFO - Total elapsed time = 3.90451 sec
2025-05-13 13:52:40,341 - stpipe.Detector1Pipeline.jump - INFO - The execution time in seconds: 4.201162
2025-05-13 13:52:40,344 - stpipe.Detector1Pipeline.jump - INFO - Step jump done
2025-05-13 13:52:40,479 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step clean_flicker_noise running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00002_nis_uncal.fits>,).
2025-05-13 13:52:40,480 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step skipped.
2025-05-13 13:52:40,601 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00002_nis_uncal.fits>,).
2025-05-13 13:52:40,684 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:52:40,684 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:52:40,709 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using algorithm = OLS_C
2025-05-13 13:52:40,709 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using weighting = optimal
2025-05-13 13:52:41,295 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of multiprocessing slices: 1
2025-05-13 13:52:46,682 - stpipe.Detector1Pipeline.ramp_fit - INFO - Ramp Fitting C Time: 5.382910490036011
2025-05-13 13:52:46,727 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit done
2025-05-13 13:52:46,861 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(2048, 2048) from jw01475006001_02201_00002_nis_uncal.fits>,).
2025-05-13 13:52:46,885 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:52:46,886 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:52:46,887 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:52:47,023 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 2048, 2048) from jw01475006001_02201_00002_nis_uncal.fits>,).
2025-05-13 13:52:47,049 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:52:47,049 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:52:47,051 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:52:47,158 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00002_nis_rateints.fits
2025-05-13 13:52:47,158 - stpipe.Detector1Pipeline - INFO - ... ending calwebb_detector1
2025-05-13 13:52:47,160 - stpipe.Detector1Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:52:47,266 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00002_nis_rate.fits
2025-05-13 13:52:47,266 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline done
2025-05-13 13:52:47,267 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:52:47,376 - CRDS - ERROR - Error determining best reference for 'pars-darkcurrentstep' = No match found.
2025-05-13 13:52:47,379 - stpipe - INFO - PARS-CHARGEMIGRATIONSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-chargemigrationstep_0018.asdf
2025-05-13 13:52:47,387 - stpipe - INFO - PARS-JUMPSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-jumpstep_0087.asdf
2025-05-13 13:52:47,397 - stpipe - INFO - PARS-DETECTOR1PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-detector1pipeline_0001.asdf
2025-05-13 13:52:47,413 - stpipe.Detector1Pipeline - INFO - Detector1Pipeline instance created.
2025-05-13 13:52:47,414 - stpipe.Detector1Pipeline.group_scale - INFO - GroupScaleStep instance created.
2025-05-13 13:52:47,415 - stpipe.Detector1Pipeline.dq_init - INFO - DQInitStep instance created.
2025-05-13 13:52:47,416 - stpipe.Detector1Pipeline.emicorr - INFO - EmiCorrStep instance created.
2025-05-13 13:52:47,417 - stpipe.Detector1Pipeline.saturation - INFO - SaturationStep instance created.
2025-05-13 13:52:47,418 - stpipe.Detector1Pipeline.ipc - INFO - IPCStep instance created.
2025-05-13 13:52:47,418 - stpipe.Detector1Pipeline.superbias - INFO - SuperBiasStep instance created.
2025-05-13 13:52:47,420 - stpipe.Detector1Pipeline.refpix - INFO - RefPixStep instance created.
2025-05-13 13:52:47,421 - stpipe.Detector1Pipeline.rscd - INFO - RscdStep instance created.
2025-05-13 13:52:47,421 - stpipe.Detector1Pipeline.firstframe - INFO - FirstFrameStep instance created.
2025-05-13 13:52:47,422 - stpipe.Detector1Pipeline.lastframe - INFO - LastFrameStep instance created.
2025-05-13 13:52:47,423 - stpipe.Detector1Pipeline.linearity - INFO - LinearityStep instance created.
2025-05-13 13:52:47,424 - stpipe.Detector1Pipeline.dark_current - INFO - DarkCurrentStep instance created.
2025-05-13 13:52:47,425 - stpipe.Detector1Pipeline.reset - INFO - ResetStep instance created.
2025-05-13 13:52:47,426 - stpipe.Detector1Pipeline.persistence - INFO - PersistenceStep instance created.
2025-05-13 13:52:47,427 - stpipe.Detector1Pipeline.charge_migration - INFO - ChargeMigrationStep instance created.
2025-05-13 13:52:47,429 - stpipe.Detector1Pipeline.jump - INFO - JumpStep instance created.
2025-05-13 13:52:47,430 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - CleanFlickerNoiseStep instance created.
2025-05-13 13:52:47,431 - stpipe.Detector1Pipeline.ramp_fit - INFO - RampFitStep instance created.
2025-05-13 13:52:47,434 - stpipe.Detector1Pipeline.gain_scale - INFO - GainScaleStep instance created.
2025-05-13 13:52:47,576 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline running with args ('./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00003_nis_uncal.fits',).
2025-05-13 13:52:47,597 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage1
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_calibrated_ramp: False
steps:
group_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dq_init:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
emicorr:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
algorithm: sequential
nints_to_phase: None
nbins: None
scale_reference: True
onthefly_corr_freq: None
use_n_cycles: 3
fit_ints_separately: False
user_supplied_reffile: None
save_intermediate_results: False
saturation:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
n_pix_grow_sat: 1
use_readpatt: True
ipc:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
superbias:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
refpix:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
odd_even_columns: True
use_side_ref_pixels: True
side_smoothing_length: 11
side_gain: 1.0
odd_even_rows: True
ovr_corr_mitigation_ftr: 3.0
preserve_irs2_refpix: False
irs2_mean_subtraction: False
refpix_algorithm: median
sigreject: 4.0
gaussmooth: 1.0
halfwidth: 30
rscd:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
type: baseline
firstframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
bright_use_group1: False
lastframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
linearity:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_current:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_output: None
average_dark_current: None
reset:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
persistence:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
input_trapsfilled: ''
flag_pers_cutoff: 40.0
save_persistence: False
save_trapsfilled: True
modify_input: False
charge_migration:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
signal_threshold: 21864.0
jump:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
rejection_threshold: 8.0
three_group_rejection_threshold: 6.0
four_group_rejection_threshold: 5.0
maximum_cores: half
flag_4_neighbors: False
max_jump_to_flag_neighbors: 200.0
min_jump_to_flag_neighbors: 10.0
after_jump_flag_dn1: 1000
after_jump_flag_time1: 90
after_jump_flag_dn2: 0
after_jump_flag_time2: 0
expand_large_events: True
min_sat_area: 5
min_jump_area: 15.0
expand_factor: 1.75
use_ellipses: False
sat_required_snowball: True
min_sat_radius_extend: 5.0
sat_expand: 0
edge_size: 20
mask_snowball_core_next_int: True
snowball_time_masked_next_int: 4000
find_showers: False
max_shower_amplitude: 4.0
extend_snr_threshold: 1.2
extend_min_area: 90
extend_inner_radius: 1.0
extend_outer_radius: 2.6
extend_ellipse_expand_ratio: 1.1
time_masked_after_shower: 15.0
min_diffs_single_pass: 10
max_extended_radius: 100
minimum_groups: 3
minimum_sigclip_groups: 100
only_use_ints: True
clean_flicker_noise:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
fit_method: median
fit_by_channel: False
background_method: median
background_box_size: None
mask_science_regions: False
apply_flat_field: False
n_sigma: 2.0
fit_histogram: False
single_mask: True
user_mask: None
save_mask: False
save_background: False
save_noise: False
ramp_fit:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
algorithm: OLS_C
int_name: ''
save_opt: False
opt_name: ''
suppress_one_group: True
firstgroup: None
lastgroup: None
maximum_cores: '1'
gain_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
2025-05-13 13:52:47,700 - stpipe.Detector1Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00003_nis_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'sirskernel', 'superbias']
2025-05-13 13:52:47,703 - stpipe.Detector1Pipeline - INFO - Prefetch for DARK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits'.
2025-05-13 13:52:47,703 - stpipe.Detector1Pipeline - INFO - Prefetch for GAIN reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits'.
2025-05-13 13:52:47,704 - stpipe.Detector1Pipeline - INFO - Prefetch for LINEARITY reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits'.
2025-05-13 13:52:47,704 - stpipe.Detector1Pipeline - INFO - Prefetch for MASK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits'.
2025-05-13 13:52:47,705 - stpipe.Detector1Pipeline - INFO - Prefetch for READNOISE reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits'.
2025-05-13 13:52:47,705 - stpipe.Detector1Pipeline - INFO - Prefetch for REFPIX reference file is 'N/A'.
2025-05-13 13:52:47,706 - stpipe.Detector1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'.
2025-05-13 13:52:47,706 - stpipe.Detector1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'.
2025-05-13 13:52:47,707 - stpipe.Detector1Pipeline - INFO - Prefetch for SATURATION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits'.
2025-05-13 13:52:47,707 - stpipe.Detector1Pipeline - INFO - Prefetch for SIRSKERNEL reference file is 'N/A'.
2025-05-13 13:52:47,707 - stpipe.Detector1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits'.
2025-05-13 13:52:47,708 - stpipe.Detector1Pipeline - INFO - Starting calwebb_detector1 ...
2025-05-13 13:52:48,024 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00003_nis_uncal.fits>,).
2025-05-13 13:52:48,032 - stpipe.Detector1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed
2025-05-13 13:52:48,032 - stpipe.Detector1Pipeline.group_scale - INFO - Step will be skipped
2025-05-13 13:52:48,034 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale done
2025-05-13 13:52:48,159 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00003_nis_uncal.fits>,).
2025-05-13 13:52:48,175 - stpipe.Detector1Pipeline.dq_init - INFO - Using MASK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits
2025-05-13 13:52:48,376 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init done
2025-05-13 13:52:48,510 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00003_nis_uncal.fits>,).
2025-05-13 13:52:48,526 - stpipe.Detector1Pipeline.saturation - INFO - Using SATURATION reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits
2025-05-13 13:52:48,550 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:52:48,551 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:52:48,555 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:52:48,604 - stpipe.Detector1Pipeline.saturation - INFO - Using read_pattern with nframes 4
2025-05-13 13:52:49,674 - stpipe.Detector1Pipeline.saturation - INFO - Detected 4591 saturated pixels
2025-05-13 13:52:49,704 - stpipe.Detector1Pipeline.saturation - INFO - Detected 2 A/D floor pixels
2025-05-13 13:52:49,710 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation done
2025-05-13 13:52:49,844 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00003_nis_uncal.fits>,).
2025-05-13 13:52:49,845 - stpipe.Detector1Pipeline.ipc - INFO - Step skipped.
2025-05-13 13:52:49,969 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00003_nis_uncal.fits>,).
2025-05-13 13:52:49,984 - stpipe.Detector1Pipeline.superbias - INFO - Using SUPERBIAS reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits
2025-05-13 13:52:50,221 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias done
2025-05-13 13:52:50,354 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00003_nis_uncal.fits>,).
2025-05-13 13:52:50,387 - stpipe.Detector1Pipeline.refpix - INFO - NIR full frame data
2025-05-13 13:52:50,388 - stpipe.Detector1Pipeline.refpix - INFO - The following parameters are valid for this mode:
2025-05-13 13:52:50,388 - stpipe.Detector1Pipeline.refpix - INFO - use_side_ref_pixels = True
2025-05-13 13:52:50,389 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_columns = True
2025-05-13 13:52:50,390 - stpipe.Detector1Pipeline.refpix - INFO - side_smoothing_length = 11
2025-05-13 13:52:50,390 - stpipe.Detector1Pipeline.refpix - INFO - side_gain = 1.0
2025-05-13 13:52:50,391 - stpipe.Detector1Pipeline.refpix - INFO - The following parameter is not applicable and is ignored:
2025-05-13 13:52:50,391 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_rows = False
2025-05-13 13:52:54,344 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix done
2025-05-13 13:52:54,494 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00003_nis_uncal.fits>,).
2025-05-13 13:52:54,510 - stpipe.Detector1Pipeline.linearity - INFO - Using Linearity reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits
2025-05-13 13:52:54,562 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:52:54,563 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:52:54,570 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:52:55,242 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity done
2025-05-13 13:52:55,378 - stpipe.Detector1Pipeline.persistence - INFO - Step persistence running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00003_nis_uncal.fits>,).
2025-05-13 13:52:55,379 - stpipe.Detector1Pipeline.persistence - INFO - Step skipped.
2025-05-13 13:52:55,513 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00003_nis_uncal.fits>,).
2025-05-13 13:52:55,528 - stpipe.Detector1Pipeline.dark_current - INFO - Using DARK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits
2025-05-13 13:52:55,742 - stpipe.Detector1Pipeline.dark_current - INFO - Science data nints=1, ngroups=16, nframes=4, groupgap=0
2025-05-13 13:52:55,743 - stpipe.Detector1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=30, nframes=4, groupgap=0
2025-05-13 13:52:55,953 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current done
2025-05-13 13:52:56,094 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00003_nis_uncal.fits>,).
2025-05-13 13:52:56,127 - stpipe.Detector1Pipeline.charge_migration - INFO - Using signal_threshold: 21864.00
2025-05-13 13:52:56,649 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration done
2025-05-13 13:52:56,802 - stpipe.Detector1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00003_nis_uncal.fits>,).
2025-05-13 13:52:56,812 - stpipe.Detector1Pipeline.jump - INFO - CR rejection threshold = 8 sigma
2025-05-13 13:52:56,813 - stpipe.Detector1Pipeline.jump - INFO - Maximum cores to use = half
2025-05-13 13:52:56,871 - stpipe.Detector1Pipeline.jump - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:52:56,880 - stpipe.Detector1Pipeline.jump - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:52:57,051 - stpipe.Detector1Pipeline.jump - INFO - Executing two-point difference method
2025-05-13 13:52:57,052 - stpipe.Detector1Pipeline.jump - INFO - Creating 2 processes for jump detection
2025-05-13 13:53:00,715 - stpipe.Detector1Pipeline.jump - INFO - Flagging Snowballs
2025-05-13 13:53:00,914 - stpipe.Detector1Pipeline.jump - INFO - Total snowballs = 48
2025-05-13 13:53:00,915 - stpipe.Detector1Pipeline.jump - INFO - Total elapsed time = 3.86306 sec
2025-05-13 13:53:00,984 - stpipe.Detector1Pipeline.jump - INFO - The execution time in seconds: 4.171997
2025-05-13 13:53:00,988 - stpipe.Detector1Pipeline.jump - INFO - Step jump done
2025-05-13 13:53:01,133 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step clean_flicker_noise running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00003_nis_uncal.fits>,).
2025-05-13 13:53:01,134 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step skipped.
2025-05-13 13:53:01,267 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00003_nis_uncal.fits>,).
2025-05-13 13:53:01,323 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:53:01,324 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:53:01,351 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using algorithm = OLS_C
2025-05-13 13:53:01,352 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using weighting = optimal
2025-05-13 13:53:01,927 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of multiprocessing slices: 1
2025-05-13 13:53:07,374 - stpipe.Detector1Pipeline.ramp_fit - INFO - Ramp Fitting C Time: 5.44295334815979
2025-05-13 13:53:07,418 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit done
2025-05-13 13:53:07,553 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(2048, 2048) from jw01475006001_02201_00003_nis_uncal.fits>,).
2025-05-13 13:53:07,577 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:53:07,577 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:53:07,579 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:53:07,700 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 2048, 2048) from jw01475006001_02201_00003_nis_uncal.fits>,).
2025-05-13 13:53:07,725 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:53:07,726 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:53:07,728 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:53:07,835 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00003_nis_rateints.fits
2025-05-13 13:53:07,836 - stpipe.Detector1Pipeline - INFO - ... ending calwebb_detector1
2025-05-13 13:53:07,838 - stpipe.Detector1Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:53:07,943 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00003_nis_rate.fits
2025-05-13 13:53:07,943 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline done
2025-05-13 13:53:07,944 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:53:08,055 - CRDS - ERROR - Error determining best reference for 'pars-darkcurrentstep' = No match found.
2025-05-13 13:53:08,058 - stpipe - INFO - PARS-CHARGEMIGRATIONSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-chargemigrationstep_0018.asdf
2025-05-13 13:53:08,066 - stpipe - INFO - PARS-JUMPSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-jumpstep_0087.asdf
2025-05-13 13:53:08,076 - stpipe - INFO - PARS-DETECTOR1PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-detector1pipeline_0001.asdf
2025-05-13 13:53:08,092 - stpipe.Detector1Pipeline - INFO - Detector1Pipeline instance created.
2025-05-13 13:53:08,093 - stpipe.Detector1Pipeline.group_scale - INFO - GroupScaleStep instance created.
2025-05-13 13:53:08,094 - stpipe.Detector1Pipeline.dq_init - INFO - DQInitStep instance created.
2025-05-13 13:53:08,095 - stpipe.Detector1Pipeline.emicorr - INFO - EmiCorrStep instance created.
2025-05-13 13:53:08,096 - stpipe.Detector1Pipeline.saturation - INFO - SaturationStep instance created.
2025-05-13 13:53:08,097 - stpipe.Detector1Pipeline.ipc - INFO - IPCStep instance created.
2025-05-13 13:53:08,098 - stpipe.Detector1Pipeline.superbias - INFO - SuperBiasStep instance created.
2025-05-13 13:53:08,099 - stpipe.Detector1Pipeline.refpix - INFO - RefPixStep instance created.
2025-05-13 13:53:08,100 - stpipe.Detector1Pipeline.rscd - INFO - RscdStep instance created.
2025-05-13 13:53:08,101 - stpipe.Detector1Pipeline.firstframe - INFO - FirstFrameStep instance created.
2025-05-13 13:53:08,102 - stpipe.Detector1Pipeline.lastframe - INFO - LastFrameStep instance created.
2025-05-13 13:53:08,103 - stpipe.Detector1Pipeline.linearity - INFO - LinearityStep instance created.
2025-05-13 13:53:08,104 - stpipe.Detector1Pipeline.dark_current - INFO - DarkCurrentStep instance created.
2025-05-13 13:53:08,104 - stpipe.Detector1Pipeline.reset - INFO - ResetStep instance created.
2025-05-13 13:53:08,105 - stpipe.Detector1Pipeline.persistence - INFO - PersistenceStep instance created.
2025-05-13 13:53:08,106 - stpipe.Detector1Pipeline.charge_migration - INFO - ChargeMigrationStep instance created.
2025-05-13 13:53:08,108 - stpipe.Detector1Pipeline.jump - INFO - JumpStep instance created.
2025-05-13 13:53:08,109 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - CleanFlickerNoiseStep instance created.
2025-05-13 13:53:08,110 - stpipe.Detector1Pipeline.ramp_fit - INFO - RampFitStep instance created.
2025-05-13 13:53:08,111 - stpipe.Detector1Pipeline.gain_scale - INFO - GainScaleStep instance created.
2025-05-13 13:53:08,245 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline running with args ('./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00004_nis_uncal.fits',).
2025-05-13 13:53:08,266 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage1
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_calibrated_ramp: False
steps:
group_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dq_init:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
emicorr:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
algorithm: sequential
nints_to_phase: None
nbins: None
scale_reference: True
onthefly_corr_freq: None
use_n_cycles: 3
fit_ints_separately: False
user_supplied_reffile: None
save_intermediate_results: False
saturation:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
n_pix_grow_sat: 1
use_readpatt: True
ipc:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
superbias:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
refpix:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
odd_even_columns: True
use_side_ref_pixels: True
side_smoothing_length: 11
side_gain: 1.0
odd_even_rows: True
ovr_corr_mitigation_ftr: 3.0
preserve_irs2_refpix: False
irs2_mean_subtraction: False
refpix_algorithm: median
sigreject: 4.0
gaussmooth: 1.0
halfwidth: 30
rscd:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
type: baseline
firstframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
bright_use_group1: False
lastframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
linearity:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_current:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_output: None
average_dark_current: None
reset:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
persistence:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
input_trapsfilled: ''
flag_pers_cutoff: 40.0
save_persistence: False
save_trapsfilled: True
modify_input: False
charge_migration:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
signal_threshold: 21864.0
jump:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
rejection_threshold: 8.0
three_group_rejection_threshold: 6.0
four_group_rejection_threshold: 5.0
maximum_cores: half
flag_4_neighbors: False
max_jump_to_flag_neighbors: 200.0
min_jump_to_flag_neighbors: 10.0
after_jump_flag_dn1: 1000
after_jump_flag_time1: 90
after_jump_flag_dn2: 0
after_jump_flag_time2: 0
expand_large_events: True
min_sat_area: 5
min_jump_area: 15.0
expand_factor: 1.75
use_ellipses: False
sat_required_snowball: True
min_sat_radius_extend: 5.0
sat_expand: 0
edge_size: 20
mask_snowball_core_next_int: True
snowball_time_masked_next_int: 4000
find_showers: False
max_shower_amplitude: 4.0
extend_snr_threshold: 1.2
extend_min_area: 90
extend_inner_radius: 1.0
extend_outer_radius: 2.6
extend_ellipse_expand_ratio: 1.1
time_masked_after_shower: 15.0
min_diffs_single_pass: 10
max_extended_radius: 100
minimum_groups: 3
minimum_sigclip_groups: 100
only_use_ints: True
clean_flicker_noise:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
fit_method: median
fit_by_channel: False
background_method: median
background_box_size: None
mask_science_regions: False
apply_flat_field: False
n_sigma: 2.0
fit_histogram: False
single_mask: True
user_mask: None
save_mask: False
save_background: False
save_noise: False
ramp_fit:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
algorithm: OLS_C
int_name: ''
save_opt: False
opt_name: ''
suppress_one_group: True
firstgroup: None
lastgroup: None
maximum_cores: '1'
gain_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
2025-05-13 13:53:08,371 - stpipe.Detector1Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00004_nis_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'sirskernel', 'superbias']
2025-05-13 13:53:08,374 - stpipe.Detector1Pipeline - INFO - Prefetch for DARK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits'.
2025-05-13 13:53:08,375 - stpipe.Detector1Pipeline - INFO - Prefetch for GAIN reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits'.
2025-05-13 13:53:08,375 - stpipe.Detector1Pipeline - INFO - Prefetch for LINEARITY reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits'.
2025-05-13 13:53:08,375 - stpipe.Detector1Pipeline - INFO - Prefetch for MASK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits'.
2025-05-13 13:53:08,376 - stpipe.Detector1Pipeline - INFO - Prefetch for READNOISE reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits'.
2025-05-13 13:53:08,376 - stpipe.Detector1Pipeline - INFO - Prefetch for REFPIX reference file is 'N/A'.
2025-05-13 13:53:08,377 - stpipe.Detector1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'.
2025-05-13 13:53:08,377 - stpipe.Detector1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'.
2025-05-13 13:53:08,378 - stpipe.Detector1Pipeline - INFO - Prefetch for SATURATION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits'.
2025-05-13 13:53:08,378 - stpipe.Detector1Pipeline - INFO - Prefetch for SIRSKERNEL reference file is 'N/A'.
2025-05-13 13:53:08,379 - stpipe.Detector1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits'.
2025-05-13 13:53:08,380 - stpipe.Detector1Pipeline - INFO - Starting calwebb_detector1 ...
2025-05-13 13:53:08,682 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00004_nis_uncal.fits>,).
2025-05-13 13:53:08,690 - stpipe.Detector1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed
2025-05-13 13:53:08,690 - stpipe.Detector1Pipeline.group_scale - INFO - Step will be skipped
2025-05-13 13:53:08,692 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale done
2025-05-13 13:53:08,833 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00004_nis_uncal.fits>,).
2025-05-13 13:53:08,848 - stpipe.Detector1Pipeline.dq_init - INFO - Using MASK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits
2025-05-13 13:53:09,048 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init done
2025-05-13 13:53:09,184 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00004_nis_uncal.fits>,).
2025-05-13 13:53:09,199 - stpipe.Detector1Pipeline.saturation - INFO - Using SATURATION reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits
2025-05-13 13:53:09,224 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:53:09,225 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:53:09,228 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:53:09,255 - stpipe.Detector1Pipeline.saturation - INFO - Using read_pattern with nframes 4
2025-05-13 13:53:10,048 - stpipe.Detector1Pipeline.saturation - INFO - Detected 5018 saturated pixels
2025-05-13 13:53:10,078 - stpipe.Detector1Pipeline.saturation - INFO - Detected 1 A/D floor pixels
2025-05-13 13:53:10,083 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation done
2025-05-13 13:53:10,222 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00004_nis_uncal.fits>,).
2025-05-13 13:53:10,223 - stpipe.Detector1Pipeline.ipc - INFO - Step skipped.
2025-05-13 13:53:10,350 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00004_nis_uncal.fits>,).
2025-05-13 13:53:10,365 - stpipe.Detector1Pipeline.superbias - INFO - Using SUPERBIAS reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits
2025-05-13 13:53:10,626 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias done
2025-05-13 13:53:10,775 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00004_nis_uncal.fits>,).
2025-05-13 13:53:10,820 - stpipe.Detector1Pipeline.refpix - INFO - NIR full frame data
2025-05-13 13:53:10,821 - stpipe.Detector1Pipeline.refpix - INFO - The following parameters are valid for this mode:
2025-05-13 13:53:10,821 - stpipe.Detector1Pipeline.refpix - INFO - use_side_ref_pixels = True
2025-05-13 13:53:10,822 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_columns = True
2025-05-13 13:53:10,823 - stpipe.Detector1Pipeline.refpix - INFO - side_smoothing_length = 11
2025-05-13 13:53:10,823 - stpipe.Detector1Pipeline.refpix - INFO - side_gain = 1.0
2025-05-13 13:53:10,823 - stpipe.Detector1Pipeline.refpix - INFO - The following parameter is not applicable and is ignored:
2025-05-13 13:53:10,824 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_rows = False
2025-05-13 13:53:14,695 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix done
2025-05-13 13:53:14,835 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00004_nis_uncal.fits>,).
2025-05-13 13:53:14,850 - stpipe.Detector1Pipeline.linearity - INFO - Using Linearity reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits
2025-05-13 13:53:14,892 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:53:14,893 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:53:14,897 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:53:15,555 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity done
2025-05-13 13:53:15,686 - stpipe.Detector1Pipeline.persistence - INFO - Step persistence running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00004_nis_uncal.fits>,).
2025-05-13 13:53:15,687 - stpipe.Detector1Pipeline.persistence - INFO - Step skipped.
2025-05-13 13:53:15,804 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00004_nis_uncal.fits>,).
2025-05-13 13:53:15,820 - stpipe.Detector1Pipeline.dark_current - INFO - Using DARK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits
2025-05-13 13:53:16,018 - stpipe.Detector1Pipeline.dark_current - INFO - Science data nints=1, ngroups=16, nframes=4, groupgap=0
2025-05-13 13:53:16,018 - stpipe.Detector1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=30, nframes=4, groupgap=0
2025-05-13 13:53:16,229 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current done
2025-05-13 13:53:16,367 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00004_nis_uncal.fits>,).
2025-05-13 13:53:16,415 - stpipe.Detector1Pipeline.charge_migration - INFO - Using signal_threshold: 21864.00
2025-05-13 13:53:16,986 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration done
2025-05-13 13:53:17,119 - stpipe.Detector1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00004_nis_uncal.fits>,).
2025-05-13 13:53:17,127 - stpipe.Detector1Pipeline.jump - INFO - CR rejection threshold = 8 sigma
2025-05-13 13:53:17,127 - stpipe.Detector1Pipeline.jump - INFO - Maximum cores to use = half
2025-05-13 13:53:17,182 - stpipe.Detector1Pipeline.jump - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:53:17,190 - stpipe.Detector1Pipeline.jump - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:53:17,349 - stpipe.Detector1Pipeline.jump - INFO - Executing two-point difference method
2025-05-13 13:53:17,349 - stpipe.Detector1Pipeline.jump - INFO - Creating 2 processes for jump detection
2025-05-13 13:53:21,129 - stpipe.Detector1Pipeline.jump - INFO - Flagging Snowballs
2025-05-13 13:53:21,322 - stpipe.Detector1Pipeline.jump - INFO - Total snowballs = 49
2025-05-13 13:53:21,323 - stpipe.Detector1Pipeline.jump - INFO - Total elapsed time = 3.97383 sec
2025-05-13 13:53:21,392 - stpipe.Detector1Pipeline.jump - INFO - The execution time in seconds: 4.265184
2025-05-13 13:53:21,396 - stpipe.Detector1Pipeline.jump - INFO - Step jump done
2025-05-13 13:53:21,525 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step clean_flicker_noise running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00004_nis_uncal.fits>,).
2025-05-13 13:53:21,526 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step skipped.
2025-05-13 13:53:21,641 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00004_nis_uncal.fits>,).
2025-05-13 13:53:21,703 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:53:21,704 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:53:21,728 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using algorithm = OLS_C
2025-05-13 13:53:21,728 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using weighting = optimal
2025-05-13 13:53:22,300 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of multiprocessing slices: 1
2025-05-13 13:53:27,733 - stpipe.Detector1Pipeline.ramp_fit - INFO - Ramp Fitting C Time: 5.42885684967041
2025-05-13 13:53:27,777 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit done
2025-05-13 13:53:27,908 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(2048, 2048) from jw01475006001_02201_00004_nis_uncal.fits>,).
2025-05-13 13:53:27,931 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:53:27,932 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:53:27,934 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:53:28,050 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 2048, 2048) from jw01475006001_02201_00004_nis_uncal.fits>,).
2025-05-13 13:53:28,076 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:53:28,076 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:53:28,078 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:53:28,189 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00004_nis_rateints.fits
2025-05-13 13:53:28,190 - stpipe.Detector1Pipeline - INFO - ... ending calwebb_detector1
2025-05-13 13:53:28,192 - stpipe.Detector1Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:53:28,298 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00004_nis_rate.fits
2025-05-13 13:53:28,299 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline done
2025-05-13 13:53:28,299 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:53:28,408 - CRDS - ERROR - Error determining best reference for 'pars-darkcurrentstep' = No match found.
2025-05-13 13:53:28,411 - stpipe - INFO - PARS-CHARGEMIGRATIONSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-chargemigrationstep_0018.asdf
2025-05-13 13:53:28,419 - stpipe - INFO - PARS-JUMPSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-jumpstep_0087.asdf
2025-05-13 13:53:28,429 - stpipe - INFO - PARS-DETECTOR1PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-detector1pipeline_0001.asdf
2025-05-13 13:53:28,445 - stpipe.Detector1Pipeline - INFO - Detector1Pipeline instance created.
2025-05-13 13:53:28,445 - stpipe.Detector1Pipeline.group_scale - INFO - GroupScaleStep instance created.
2025-05-13 13:53:28,446 - stpipe.Detector1Pipeline.dq_init - INFO - DQInitStep instance created.
2025-05-13 13:53:28,447 - stpipe.Detector1Pipeline.emicorr - INFO - EmiCorrStep instance created.
2025-05-13 13:53:28,448 - stpipe.Detector1Pipeline.saturation - INFO - SaturationStep instance created.
2025-05-13 13:53:28,449 - stpipe.Detector1Pipeline.ipc - INFO - IPCStep instance created.
2025-05-13 13:53:28,450 - stpipe.Detector1Pipeline.superbias - INFO - SuperBiasStep instance created.
2025-05-13 13:53:28,451 - stpipe.Detector1Pipeline.refpix - INFO - RefPixStep instance created.
2025-05-13 13:53:28,452 - stpipe.Detector1Pipeline.rscd - INFO - RscdStep instance created.
2025-05-13 13:53:28,453 - stpipe.Detector1Pipeline.firstframe - INFO - FirstFrameStep instance created.
2025-05-13 13:53:28,454 - stpipe.Detector1Pipeline.lastframe - INFO - LastFrameStep instance created.
2025-05-13 13:53:28,454 - stpipe.Detector1Pipeline.linearity - INFO - LinearityStep instance created.
2025-05-13 13:53:28,455 - stpipe.Detector1Pipeline.dark_current - INFO - DarkCurrentStep instance created.
2025-05-13 13:53:28,456 - stpipe.Detector1Pipeline.reset - INFO - ResetStep instance created.
2025-05-13 13:53:28,457 - stpipe.Detector1Pipeline.persistence - INFO - PersistenceStep instance created.
2025-05-13 13:53:28,458 - stpipe.Detector1Pipeline.charge_migration - INFO - ChargeMigrationStep instance created.
2025-05-13 13:53:28,460 - stpipe.Detector1Pipeline.jump - INFO - JumpStep instance created.
2025-05-13 13:53:28,461 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - CleanFlickerNoiseStep instance created.
2025-05-13 13:53:28,462 - stpipe.Detector1Pipeline.ramp_fit - INFO - RampFitStep instance created.
2025-05-13 13:53:28,463 - stpipe.Detector1Pipeline.gain_scale - INFO - GainScaleStep instance created.
2025-05-13 13:53:28,596 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline running with args ('./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00005_nis_uncal.fits',).
2025-05-13 13:53:28,618 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage1
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_calibrated_ramp: False
steps:
group_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dq_init:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
emicorr:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
algorithm: sequential
nints_to_phase: None
nbins: None
scale_reference: True
onthefly_corr_freq: None
use_n_cycles: 3
fit_ints_separately: False
user_supplied_reffile: None
save_intermediate_results: False
saturation:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
n_pix_grow_sat: 1
use_readpatt: True
ipc:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
superbias:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
refpix:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
odd_even_columns: True
use_side_ref_pixels: True
side_smoothing_length: 11
side_gain: 1.0
odd_even_rows: True
ovr_corr_mitigation_ftr: 3.0
preserve_irs2_refpix: False
irs2_mean_subtraction: False
refpix_algorithm: median
sigreject: 4.0
gaussmooth: 1.0
halfwidth: 30
rscd:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
type: baseline
firstframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
bright_use_group1: False
lastframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
linearity:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_current:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_output: None
average_dark_current: None
reset:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
persistence:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
input_trapsfilled: ''
flag_pers_cutoff: 40.0
save_persistence: False
save_trapsfilled: True
modify_input: False
charge_migration:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
signal_threshold: 21864.0
jump:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
rejection_threshold: 8.0
three_group_rejection_threshold: 6.0
four_group_rejection_threshold: 5.0
maximum_cores: half
flag_4_neighbors: False
max_jump_to_flag_neighbors: 200.0
min_jump_to_flag_neighbors: 10.0
after_jump_flag_dn1: 1000
after_jump_flag_time1: 90
after_jump_flag_dn2: 0
after_jump_flag_time2: 0
expand_large_events: True
min_sat_area: 5
min_jump_area: 15.0
expand_factor: 1.75
use_ellipses: False
sat_required_snowball: True
min_sat_radius_extend: 5.0
sat_expand: 0
edge_size: 20
mask_snowball_core_next_int: True
snowball_time_masked_next_int: 4000
find_showers: False
max_shower_amplitude: 4.0
extend_snr_threshold: 1.2
extend_min_area: 90
extend_inner_radius: 1.0
extend_outer_radius: 2.6
extend_ellipse_expand_ratio: 1.1
time_masked_after_shower: 15.0
min_diffs_single_pass: 10
max_extended_radius: 100
minimum_groups: 3
minimum_sigclip_groups: 100
only_use_ints: True
clean_flicker_noise:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
fit_method: median
fit_by_channel: False
background_method: median
background_box_size: None
mask_science_regions: False
apply_flat_field: False
n_sigma: 2.0
fit_histogram: False
single_mask: True
user_mask: None
save_mask: False
save_background: False
save_noise: False
ramp_fit:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
algorithm: OLS_C
int_name: ''
save_opt: False
opt_name: ''
suppress_one_group: True
firstgroup: None
lastgroup: None
maximum_cores: '1'
gain_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
2025-05-13 13:53:28,719 - stpipe.Detector1Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00005_nis_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'sirskernel', 'superbias']
2025-05-13 13:53:28,722 - stpipe.Detector1Pipeline - INFO - Prefetch for DARK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits'.
2025-05-13 13:53:28,722 - stpipe.Detector1Pipeline - INFO - Prefetch for GAIN reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits'.
2025-05-13 13:53:28,723 - stpipe.Detector1Pipeline - INFO - Prefetch for LINEARITY reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits'.
2025-05-13 13:53:28,723 - stpipe.Detector1Pipeline - INFO - Prefetch for MASK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits'.
2025-05-13 13:53:28,724 - stpipe.Detector1Pipeline - INFO - Prefetch for READNOISE reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits'.
2025-05-13 13:53:28,724 - stpipe.Detector1Pipeline - INFO - Prefetch for REFPIX reference file is 'N/A'.
2025-05-13 13:53:28,725 - stpipe.Detector1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'.
2025-05-13 13:53:28,725 - stpipe.Detector1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'.
2025-05-13 13:53:28,725 - stpipe.Detector1Pipeline - INFO - Prefetch for SATURATION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits'.
2025-05-13 13:53:28,726 - stpipe.Detector1Pipeline - INFO - Prefetch for SIRSKERNEL reference file is 'N/A'.
2025-05-13 13:53:28,726 - stpipe.Detector1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits'.
2025-05-13 13:53:28,727 - stpipe.Detector1Pipeline - INFO - Starting calwebb_detector1 ...
2025-05-13 13:53:29,015 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00005_nis_uncal.fits>,).
2025-05-13 13:53:29,022 - stpipe.Detector1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed
2025-05-13 13:53:29,022 - stpipe.Detector1Pipeline.group_scale - INFO - Step will be skipped
2025-05-13 13:53:29,024 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale done
2025-05-13 13:53:29,140 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00005_nis_uncal.fits>,).
2025-05-13 13:53:29,156 - stpipe.Detector1Pipeline.dq_init - INFO - Using MASK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits
2025-05-13 13:53:29,353 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init done
2025-05-13 13:53:29,487 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00005_nis_uncal.fits>,).
2025-05-13 13:53:29,503 - stpipe.Detector1Pipeline.saturation - INFO - Using SATURATION reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits
2025-05-13 13:53:29,527 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:53:29,528 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:53:29,533 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:53:29,613 - stpipe.Detector1Pipeline.saturation - INFO - Using read_pattern with nframes 4
2025-05-13 13:53:30,708 - stpipe.Detector1Pipeline.saturation - INFO - Detected 4873 saturated pixels
2025-05-13 13:53:30,740 - stpipe.Detector1Pipeline.saturation - INFO - Detected 3 A/D floor pixels
2025-05-13 13:53:30,745 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation done
2025-05-13 13:53:30,884 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00005_nis_uncal.fits>,).
2025-05-13 13:53:30,884 - stpipe.Detector1Pipeline.ipc - INFO - Step skipped.
2025-05-13 13:53:31,000 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00005_nis_uncal.fits>,).
2025-05-13 13:53:31,016 - stpipe.Detector1Pipeline.superbias - INFO - Using SUPERBIAS reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits
2025-05-13 13:53:31,245 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias done
2025-05-13 13:53:31,375 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00005_nis_uncal.fits>,).
2025-05-13 13:53:31,407 - stpipe.Detector1Pipeline.refpix - INFO - NIR full frame data
2025-05-13 13:53:31,408 - stpipe.Detector1Pipeline.refpix - INFO - The following parameters are valid for this mode:
2025-05-13 13:53:31,408 - stpipe.Detector1Pipeline.refpix - INFO - use_side_ref_pixels = True
2025-05-13 13:53:31,409 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_columns = True
2025-05-13 13:53:31,409 - stpipe.Detector1Pipeline.refpix - INFO - side_smoothing_length = 11
2025-05-13 13:53:31,410 - stpipe.Detector1Pipeline.refpix - INFO - side_gain = 1.0
2025-05-13 13:53:31,410 - stpipe.Detector1Pipeline.refpix - INFO - The following parameter is not applicable and is ignored:
2025-05-13 13:53:31,411 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_rows = False
2025-05-13 13:53:35,207 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix done
2025-05-13 13:53:35,346 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00005_nis_uncal.fits>,).
2025-05-13 13:53:35,361 - stpipe.Detector1Pipeline.linearity - INFO - Using Linearity reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits
2025-05-13 13:53:35,395 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:53:35,396 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:53:35,400 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:53:36,054 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity done
2025-05-13 13:53:36,186 - stpipe.Detector1Pipeline.persistence - INFO - Step persistence running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00005_nis_uncal.fits>,).
2025-05-13 13:53:36,187 - stpipe.Detector1Pipeline.persistence - INFO - Step skipped.
2025-05-13 13:53:36,309 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00005_nis_uncal.fits>,).
2025-05-13 13:53:36,324 - stpipe.Detector1Pipeline.dark_current - INFO - Using DARK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits
2025-05-13 13:53:36,525 - stpipe.Detector1Pipeline.dark_current - INFO - Science data nints=1, ngroups=16, nframes=4, groupgap=0
2025-05-13 13:53:36,526 - stpipe.Detector1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=30, nframes=4, groupgap=0
2025-05-13 13:53:36,719 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current done
2025-05-13 13:53:36,858 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00005_nis_uncal.fits>,).
2025-05-13 13:53:36,902 - stpipe.Detector1Pipeline.charge_migration - INFO - Using signal_threshold: 21864.00
2025-05-13 13:53:37,436 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration done
2025-05-13 13:53:37,567 - stpipe.Detector1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00005_nis_uncal.fits>,).
2025-05-13 13:53:37,574 - stpipe.Detector1Pipeline.jump - INFO - CR rejection threshold = 8 sigma
2025-05-13 13:53:37,574 - stpipe.Detector1Pipeline.jump - INFO - Maximum cores to use = half
2025-05-13 13:53:37,646 - stpipe.Detector1Pipeline.jump - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:53:37,654 - stpipe.Detector1Pipeline.jump - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:53:37,812 - stpipe.Detector1Pipeline.jump - INFO - Executing two-point difference method
2025-05-13 13:53:37,813 - stpipe.Detector1Pipeline.jump - INFO - Creating 2 processes for jump detection
2025-05-13 13:53:41,511 - stpipe.Detector1Pipeline.jump - INFO - Flagging Snowballs
2025-05-13 13:53:41,708 - stpipe.Detector1Pipeline.jump - INFO - Total snowballs = 46
2025-05-13 13:53:41,708 - stpipe.Detector1Pipeline.jump - INFO - Total elapsed time = 3.89548 sec
2025-05-13 13:53:41,778 - stpipe.Detector1Pipeline.jump - INFO - The execution time in seconds: 4.203705
2025-05-13 13:53:41,781 - stpipe.Detector1Pipeline.jump - INFO - Step jump done
2025-05-13 13:53:41,915 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step clean_flicker_noise running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00005_nis_uncal.fits>,).
2025-05-13 13:53:41,915 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step skipped.
2025-05-13 13:53:42,046 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00005_nis_uncal.fits>,).
2025-05-13 13:53:42,094 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:53:42,094 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:53:42,119 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using algorithm = OLS_C
2025-05-13 13:53:42,119 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using weighting = optimal
2025-05-13 13:53:42,697 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of multiprocessing slices: 1
2025-05-13 13:53:48,112 - stpipe.Detector1Pipeline.ramp_fit - INFO - Ramp Fitting C Time: 5.411514043807983
2025-05-13 13:53:48,155 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit done
2025-05-13 13:53:48,292 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(2048, 2048) from jw01475006001_02201_00005_nis_uncal.fits>,).
2025-05-13 13:53:48,316 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:53:48,317 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:53:48,319 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:53:48,440 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 2048, 2048) from jw01475006001_02201_00005_nis_uncal.fits>,).
2025-05-13 13:53:48,465 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:53:48,465 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:53:48,467 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:53:48,573 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00005_nis_rateints.fits
2025-05-13 13:53:48,574 - stpipe.Detector1Pipeline - INFO - ... ending calwebb_detector1
2025-05-13 13:53:48,576 - stpipe.Detector1Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:53:48,681 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00005_nis_rate.fits
2025-05-13 13:53:48,681 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline done
2025-05-13 13:53:48,682 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:53:48,794 - CRDS - ERROR - Error determining best reference for 'pars-darkcurrentstep' = No match found.
2025-05-13 13:53:48,797 - stpipe - INFO - PARS-CHARGEMIGRATIONSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-chargemigrationstep_0018.asdf
2025-05-13 13:53:48,805 - stpipe - INFO - PARS-JUMPSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-jumpstep_0087.asdf
2025-05-13 13:53:48,815 - stpipe - INFO - PARS-DETECTOR1PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-detector1pipeline_0001.asdf
2025-05-13 13:53:48,831 - stpipe.Detector1Pipeline - INFO - Detector1Pipeline instance created.
2025-05-13 13:53:48,831 - stpipe.Detector1Pipeline.group_scale - INFO - GroupScaleStep instance created.
2025-05-13 13:53:48,832 - stpipe.Detector1Pipeline.dq_init - INFO - DQInitStep instance created.
2025-05-13 13:53:48,833 - stpipe.Detector1Pipeline.emicorr - INFO - EmiCorrStep instance created.
2025-05-13 13:53:48,834 - stpipe.Detector1Pipeline.saturation - INFO - SaturationStep instance created.
2025-05-13 13:53:48,835 - stpipe.Detector1Pipeline.ipc - INFO - IPCStep instance created.
2025-05-13 13:53:48,836 - stpipe.Detector1Pipeline.superbias - INFO - SuperBiasStep instance created.
2025-05-13 13:53:48,837 - stpipe.Detector1Pipeline.refpix - INFO - RefPixStep instance created.
2025-05-13 13:53:48,838 - stpipe.Detector1Pipeline.rscd - INFO - RscdStep instance created.
2025-05-13 13:53:48,839 - stpipe.Detector1Pipeline.firstframe - INFO - FirstFrameStep instance created.
2025-05-13 13:53:48,840 - stpipe.Detector1Pipeline.lastframe - INFO - LastFrameStep instance created.
2025-05-13 13:53:48,840 - stpipe.Detector1Pipeline.linearity - INFO - LinearityStep instance created.
2025-05-13 13:53:48,841 - stpipe.Detector1Pipeline.dark_current - INFO - DarkCurrentStep instance created.
2025-05-13 13:53:48,842 - stpipe.Detector1Pipeline.reset - INFO - ResetStep instance created.
2025-05-13 13:53:48,843 - stpipe.Detector1Pipeline.persistence - INFO - PersistenceStep instance created.
2025-05-13 13:53:48,844 - stpipe.Detector1Pipeline.charge_migration - INFO - ChargeMigrationStep instance created.
2025-05-13 13:53:48,847 - stpipe.Detector1Pipeline.jump - INFO - JumpStep instance created.
2025-05-13 13:53:48,848 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - CleanFlickerNoiseStep instance created.
2025-05-13 13:53:48,849 - stpipe.Detector1Pipeline.ramp_fit - INFO - RampFitStep instance created.
2025-05-13 13:53:48,849 - stpipe.Detector1Pipeline.gain_scale - INFO - GainScaleStep instance created.
2025-05-13 13:53:48,982 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline running with args ('./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00006_nis_uncal.fits',).
2025-05-13 13:53:49,002 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage1
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_calibrated_ramp: False
steps:
group_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dq_init:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
emicorr:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
algorithm: sequential
nints_to_phase: None
nbins: None
scale_reference: True
onthefly_corr_freq: None
use_n_cycles: 3
fit_ints_separately: False
user_supplied_reffile: None
save_intermediate_results: False
saturation:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
n_pix_grow_sat: 1
use_readpatt: True
ipc:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
superbias:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
refpix:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
odd_even_columns: True
use_side_ref_pixels: True
side_smoothing_length: 11
side_gain: 1.0
odd_even_rows: True
ovr_corr_mitigation_ftr: 3.0
preserve_irs2_refpix: False
irs2_mean_subtraction: False
refpix_algorithm: median
sigreject: 4.0
gaussmooth: 1.0
halfwidth: 30
rscd:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
type: baseline
firstframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
bright_use_group1: False
lastframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
linearity:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_current:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_output: None
average_dark_current: None
reset:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
persistence:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
input_trapsfilled: ''
flag_pers_cutoff: 40.0
save_persistence: False
save_trapsfilled: True
modify_input: False
charge_migration:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
signal_threshold: 21864.0
jump:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
rejection_threshold: 8.0
three_group_rejection_threshold: 6.0
four_group_rejection_threshold: 5.0
maximum_cores: half
flag_4_neighbors: False
max_jump_to_flag_neighbors: 200.0
min_jump_to_flag_neighbors: 10.0
after_jump_flag_dn1: 1000
after_jump_flag_time1: 90
after_jump_flag_dn2: 0
after_jump_flag_time2: 0
expand_large_events: True
min_sat_area: 5
min_jump_area: 15.0
expand_factor: 1.75
use_ellipses: False
sat_required_snowball: True
min_sat_radius_extend: 5.0
sat_expand: 0
edge_size: 20
mask_snowball_core_next_int: True
snowball_time_masked_next_int: 4000
find_showers: False
max_shower_amplitude: 4.0
extend_snr_threshold: 1.2
extend_min_area: 90
extend_inner_radius: 1.0
extend_outer_radius: 2.6
extend_ellipse_expand_ratio: 1.1
time_masked_after_shower: 15.0
min_diffs_single_pass: 10
max_extended_radius: 100
minimum_groups: 3
minimum_sigclip_groups: 100
only_use_ints: True
clean_flicker_noise:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
fit_method: median
fit_by_channel: False
background_method: median
background_box_size: None
mask_science_regions: False
apply_flat_field: False
n_sigma: 2.0
fit_histogram: False
single_mask: True
user_mask: None
save_mask: False
save_background: False
save_noise: False
ramp_fit:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
algorithm: OLS_C
int_name: ''
save_opt: False
opt_name: ''
suppress_one_group: True
firstgroup: None
lastgroup: None
maximum_cores: '1'
gain_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
2025-05-13 13:53:49,106 - stpipe.Detector1Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00006_nis_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'sirskernel', 'superbias']
2025-05-13 13:53:49,109 - stpipe.Detector1Pipeline - INFO - Prefetch for DARK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits'.
2025-05-13 13:53:49,110 - stpipe.Detector1Pipeline - INFO - Prefetch for GAIN reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits'.
2025-05-13 13:53:49,110 - stpipe.Detector1Pipeline - INFO - Prefetch for LINEARITY reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits'.
2025-05-13 13:53:49,111 - stpipe.Detector1Pipeline - INFO - Prefetch for MASK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits'.
2025-05-13 13:53:49,111 - stpipe.Detector1Pipeline - INFO - Prefetch for READNOISE reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits'.
2025-05-13 13:53:49,112 - stpipe.Detector1Pipeline - INFO - Prefetch for REFPIX reference file is 'N/A'.
2025-05-13 13:53:49,112 - stpipe.Detector1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'.
2025-05-13 13:53:49,112 - stpipe.Detector1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'.
2025-05-13 13:53:49,113 - stpipe.Detector1Pipeline - INFO - Prefetch for SATURATION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits'.
2025-05-13 13:53:49,114 - stpipe.Detector1Pipeline - INFO - Prefetch for SIRSKERNEL reference file is 'N/A'.
2025-05-13 13:53:49,114 - stpipe.Detector1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits'.
2025-05-13 13:53:49,115 - stpipe.Detector1Pipeline - INFO - Starting calwebb_detector1 ...
2025-05-13 13:53:49,410 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00006_nis_uncal.fits>,).
2025-05-13 13:53:49,418 - stpipe.Detector1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed
2025-05-13 13:53:49,418 - stpipe.Detector1Pipeline.group_scale - INFO - Step will be skipped
2025-05-13 13:53:49,420 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale done
2025-05-13 13:53:49,545 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00006_nis_uncal.fits>,).
2025-05-13 13:53:49,560 - stpipe.Detector1Pipeline.dq_init - INFO - Using MASK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits
2025-05-13 13:53:49,743 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init done
2025-05-13 13:53:49,879 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00006_nis_uncal.fits>,).
2025-05-13 13:53:49,894 - stpipe.Detector1Pipeline.saturation - INFO - Using SATURATION reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits
2025-05-13 13:53:49,919 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:53:49,920 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:53:49,923 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:53:49,964 - stpipe.Detector1Pipeline.saturation - INFO - Using read_pattern with nframes 4
2025-05-13 13:53:50,749 - stpipe.Detector1Pipeline.saturation - INFO - Detected 4452 saturated pixels
2025-05-13 13:53:50,774 - stpipe.Detector1Pipeline.saturation - INFO - Detected 1 A/D floor pixels
2025-05-13 13:53:50,780 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation done
2025-05-13 13:53:50,912 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00006_nis_uncal.fits>,).
2025-05-13 13:53:50,913 - stpipe.Detector1Pipeline.ipc - INFO - Step skipped.
2025-05-13 13:53:51,034 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00006_nis_uncal.fits>,).
2025-05-13 13:53:51,049 - stpipe.Detector1Pipeline.superbias - INFO - Using SUPERBIAS reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits
2025-05-13 13:53:51,300 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias done
2025-05-13 13:53:51,434 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00006_nis_uncal.fits>,).
2025-05-13 13:53:51,480 - stpipe.Detector1Pipeline.refpix - INFO - NIR full frame data
2025-05-13 13:53:51,481 - stpipe.Detector1Pipeline.refpix - INFO - The following parameters are valid for this mode:
2025-05-13 13:53:51,481 - stpipe.Detector1Pipeline.refpix - INFO - use_side_ref_pixels = True
2025-05-13 13:53:51,482 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_columns = True
2025-05-13 13:53:51,482 - stpipe.Detector1Pipeline.refpix - INFO - side_smoothing_length = 11
2025-05-13 13:53:51,483 - stpipe.Detector1Pipeline.refpix - INFO - side_gain = 1.0
2025-05-13 13:53:51,483 - stpipe.Detector1Pipeline.refpix - INFO - The following parameter is not applicable and is ignored:
2025-05-13 13:53:51,484 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_rows = False
2025-05-13 13:53:55,368 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix done
2025-05-13 13:53:55,511 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00006_nis_uncal.fits>,).
2025-05-13 13:53:55,526 - stpipe.Detector1Pipeline.linearity - INFO - Using Linearity reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits
2025-05-13 13:53:55,568 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:53:55,569 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:53:55,572 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:53:56,265 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity done
2025-05-13 13:53:56,398 - stpipe.Detector1Pipeline.persistence - INFO - Step persistence running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00006_nis_uncal.fits>,).
2025-05-13 13:53:56,399 - stpipe.Detector1Pipeline.persistence - INFO - Step skipped.
2025-05-13 13:53:56,517 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00006_nis_uncal.fits>,).
2025-05-13 13:53:56,533 - stpipe.Detector1Pipeline.dark_current - INFO - Using DARK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits
2025-05-13 13:53:56,750 - stpipe.Detector1Pipeline.dark_current - INFO - Science data nints=1, ngroups=16, nframes=4, groupgap=0
2025-05-13 13:53:56,750 - stpipe.Detector1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=30, nframes=4, groupgap=0
2025-05-13 13:53:56,944 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current done
2025-05-13 13:53:57,082 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00006_nis_uncal.fits>,).
2025-05-13 13:53:57,115 - stpipe.Detector1Pipeline.charge_migration - INFO - Using signal_threshold: 21864.00
2025-05-13 13:53:57,655 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration done
2025-05-13 13:53:57,789 - stpipe.Detector1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00006_nis_uncal.fits>,).
2025-05-13 13:53:57,797 - stpipe.Detector1Pipeline.jump - INFO - CR rejection threshold = 8 sigma
2025-05-13 13:53:57,797 - stpipe.Detector1Pipeline.jump - INFO - Maximum cores to use = half
2025-05-13 13:53:57,854 - stpipe.Detector1Pipeline.jump - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:53:57,862 - stpipe.Detector1Pipeline.jump - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:53:58,021 - stpipe.Detector1Pipeline.jump - INFO - Executing two-point difference method
2025-05-13 13:53:58,022 - stpipe.Detector1Pipeline.jump - INFO - Creating 2 processes for jump detection
2025-05-13 13:54:01,718 - stpipe.Detector1Pipeline.jump - INFO - Flagging Snowballs
2025-05-13 13:54:01,919 - stpipe.Detector1Pipeline.jump - INFO - Total snowballs = 43
2025-05-13 13:54:01,920 - stpipe.Detector1Pipeline.jump - INFO - Total elapsed time = 3.89834 sec
2025-05-13 13:54:01,990 - stpipe.Detector1Pipeline.jump - INFO - The execution time in seconds: 4.193127
2025-05-13 13:54:01,994 - stpipe.Detector1Pipeline.jump - INFO - Step jump done
2025-05-13 13:54:02,127 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step clean_flicker_noise running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00006_nis_uncal.fits>,).
2025-05-13 13:54:02,128 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step skipped.
2025-05-13 13:54:02,247 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00006_nis_uncal.fits>,).
2025-05-13 13:54:02,309 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:54:02,309 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:54:02,333 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using algorithm = OLS_C
2025-05-13 13:54:02,333 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using weighting = optimal
2025-05-13 13:54:02,896 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of multiprocessing slices: 1
2025-05-13 13:54:08,373 - stpipe.Detector1Pipeline.ramp_fit - INFO - Ramp Fitting C Time: 5.4735188484191895
2025-05-13 13:54:08,416 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit done
2025-05-13 13:54:08,551 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(2048, 2048) from jw01475006001_02201_00006_nis_uncal.fits>,).
2025-05-13 13:54:08,575 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:54:08,575 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:54:08,577 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:54:08,697 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 2048, 2048) from jw01475006001_02201_00006_nis_uncal.fits>,).
2025-05-13 13:54:08,723 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:54:08,724 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:54:08,726 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:54:08,832 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00006_nis_rateints.fits
2025-05-13 13:54:08,833 - stpipe.Detector1Pipeline - INFO - ... ending calwebb_detector1
2025-05-13 13:54:08,835 - stpipe.Detector1Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:54:08,939 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00006_nis_rate.fits
2025-05-13 13:54:08,940 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline done
2025-05-13 13:54:08,941 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:54:09,049 - CRDS - ERROR - Error determining best reference for 'pars-darkcurrentstep' = No match found.
2025-05-13 13:54:09,052 - stpipe - INFO - PARS-CHARGEMIGRATIONSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-chargemigrationstep_0018.asdf
2025-05-13 13:54:09,060 - stpipe - INFO - PARS-JUMPSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-jumpstep_0087.asdf
2025-05-13 13:54:09,070 - stpipe - INFO - PARS-DETECTOR1PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-detector1pipeline_0001.asdf
2025-05-13 13:54:09,086 - stpipe.Detector1Pipeline - INFO - Detector1Pipeline instance created.
2025-05-13 13:54:09,087 - stpipe.Detector1Pipeline.group_scale - INFO - GroupScaleStep instance created.
2025-05-13 13:54:09,088 - stpipe.Detector1Pipeline.dq_init - INFO - DQInitStep instance created.
2025-05-13 13:54:09,089 - stpipe.Detector1Pipeline.emicorr - INFO - EmiCorrStep instance created.
2025-05-13 13:54:09,090 - stpipe.Detector1Pipeline.saturation - INFO - SaturationStep instance created.
2025-05-13 13:54:09,090 - stpipe.Detector1Pipeline.ipc - INFO - IPCStep instance created.
2025-05-13 13:54:09,092 - stpipe.Detector1Pipeline.superbias - INFO - SuperBiasStep instance created.
2025-05-13 13:54:09,093 - stpipe.Detector1Pipeline.refpix - INFO - RefPixStep instance created.
2025-05-13 13:54:09,094 - stpipe.Detector1Pipeline.rscd - INFO - RscdStep instance created.
2025-05-13 13:54:09,095 - stpipe.Detector1Pipeline.firstframe - INFO - FirstFrameStep instance created.
2025-05-13 13:54:09,095 - stpipe.Detector1Pipeline.lastframe - INFO - LastFrameStep instance created.
2025-05-13 13:54:09,096 - stpipe.Detector1Pipeline.linearity - INFO - LinearityStep instance created.
2025-05-13 13:54:09,097 - stpipe.Detector1Pipeline.dark_current - INFO - DarkCurrentStep instance created.
2025-05-13 13:54:09,098 - stpipe.Detector1Pipeline.reset - INFO - ResetStep instance created.
2025-05-13 13:54:09,099 - stpipe.Detector1Pipeline.persistence - INFO - PersistenceStep instance created.
2025-05-13 13:54:09,100 - stpipe.Detector1Pipeline.charge_migration - INFO - ChargeMigrationStep instance created.
2025-05-13 13:54:09,102 - stpipe.Detector1Pipeline.jump - INFO - JumpStep instance created.
2025-05-13 13:54:09,103 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - CleanFlickerNoiseStep instance created.
2025-05-13 13:54:09,104 - stpipe.Detector1Pipeline.ramp_fit - INFO - RampFitStep instance created.
2025-05-13 13:54:09,105 - stpipe.Detector1Pipeline.gain_scale - INFO - GainScaleStep instance created.
2025-05-13 13:54:09,241 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline running with args ('./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00007_nis_uncal.fits',).
2025-05-13 13:54:09,262 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage1
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_calibrated_ramp: False
steps:
group_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dq_init:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
emicorr:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
algorithm: sequential
nints_to_phase: None
nbins: None
scale_reference: True
onthefly_corr_freq: None
use_n_cycles: 3
fit_ints_separately: False
user_supplied_reffile: None
save_intermediate_results: False
saturation:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
n_pix_grow_sat: 1
use_readpatt: True
ipc:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
superbias:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
refpix:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
odd_even_columns: True
use_side_ref_pixels: True
side_smoothing_length: 11
side_gain: 1.0
odd_even_rows: True
ovr_corr_mitigation_ftr: 3.0
preserve_irs2_refpix: False
irs2_mean_subtraction: False
refpix_algorithm: median
sigreject: 4.0
gaussmooth: 1.0
halfwidth: 30
rscd:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
type: baseline
firstframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
bright_use_group1: False
lastframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
linearity:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_current:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_output: None
average_dark_current: None
reset:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
persistence:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
input_trapsfilled: ''
flag_pers_cutoff: 40.0
save_persistence: False
save_trapsfilled: True
modify_input: False
charge_migration:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
signal_threshold: 21864.0
jump:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
rejection_threshold: 8.0
three_group_rejection_threshold: 6.0
four_group_rejection_threshold: 5.0
maximum_cores: half
flag_4_neighbors: False
max_jump_to_flag_neighbors: 200.0
min_jump_to_flag_neighbors: 10.0
after_jump_flag_dn1: 1000
after_jump_flag_time1: 90
after_jump_flag_dn2: 0
after_jump_flag_time2: 0
expand_large_events: True
min_sat_area: 5
min_jump_area: 15.0
expand_factor: 1.75
use_ellipses: False
sat_required_snowball: True
min_sat_radius_extend: 5.0
sat_expand: 0
edge_size: 20
mask_snowball_core_next_int: True
snowball_time_masked_next_int: 4000
find_showers: False
max_shower_amplitude: 4.0
extend_snr_threshold: 1.2
extend_min_area: 90
extend_inner_radius: 1.0
extend_outer_radius: 2.6
extend_ellipse_expand_ratio: 1.1
time_masked_after_shower: 15.0
min_diffs_single_pass: 10
max_extended_radius: 100
minimum_groups: 3
minimum_sigclip_groups: 100
only_use_ints: True
clean_flicker_noise:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
fit_method: median
fit_by_channel: False
background_method: median
background_box_size: None
mask_science_regions: False
apply_flat_field: False
n_sigma: 2.0
fit_histogram: False
single_mask: True
user_mask: None
save_mask: False
save_background: False
save_noise: False
ramp_fit:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
algorithm: OLS_C
int_name: ''
save_opt: False
opt_name: ''
suppress_one_group: True
firstgroup: None
lastgroup: None
maximum_cores: '1'
gain_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
2025-05-13 13:54:09,364 - stpipe.Detector1Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00007_nis_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'sirskernel', 'superbias']
2025-05-13 13:54:09,367 - stpipe.Detector1Pipeline - INFO - Prefetch for DARK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits'.
2025-05-13 13:54:09,367 - stpipe.Detector1Pipeline - INFO - Prefetch for GAIN reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits'.
2025-05-13 13:54:09,368 - stpipe.Detector1Pipeline - INFO - Prefetch for LINEARITY reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits'.
2025-05-13 13:54:09,368 - stpipe.Detector1Pipeline - INFO - Prefetch for MASK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits'.
2025-05-13 13:54:09,369 - stpipe.Detector1Pipeline - INFO - Prefetch for READNOISE reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits'.
2025-05-13 13:54:09,370 - stpipe.Detector1Pipeline - INFO - Prefetch for REFPIX reference file is 'N/A'.
2025-05-13 13:54:09,370 - stpipe.Detector1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'.
2025-05-13 13:54:09,370 - stpipe.Detector1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'.
2025-05-13 13:54:09,371 - stpipe.Detector1Pipeline - INFO - Prefetch for SATURATION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits'.
2025-05-13 13:54:09,371 - stpipe.Detector1Pipeline - INFO - Prefetch for SIRSKERNEL reference file is 'N/A'.
2025-05-13 13:54:09,372 - stpipe.Detector1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits'.
2025-05-13 13:54:09,372 - stpipe.Detector1Pipeline - INFO - Starting calwebb_detector1 ...
2025-05-13 13:54:09,669 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00007_nis_uncal.fits>,).
2025-05-13 13:54:09,677 - stpipe.Detector1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed
2025-05-13 13:54:09,677 - stpipe.Detector1Pipeline.group_scale - INFO - Step will be skipped
2025-05-13 13:54:09,679 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale done
2025-05-13 13:54:09,798 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00007_nis_uncal.fits>,).
2025-05-13 13:54:09,813 - stpipe.Detector1Pipeline.dq_init - INFO - Using MASK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits
2025-05-13 13:54:09,998 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init done
2025-05-13 13:54:10,138 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00007_nis_uncal.fits>,).
2025-05-13 13:54:10,153 - stpipe.Detector1Pipeline.saturation - INFO - Using SATURATION reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits
2025-05-13 13:54:10,178 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:54:10,179 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:54:10,183 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:54:10,209 - stpipe.Detector1Pipeline.saturation - INFO - Using read_pattern with nframes 4
2025-05-13 13:54:10,994 - stpipe.Detector1Pipeline.saturation - INFO - Detected 4322 saturated pixels
2025-05-13 13:54:11,019 - stpipe.Detector1Pipeline.saturation - INFO - Detected 1 A/D floor pixels
2025-05-13 13:54:11,028 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation done
2025-05-13 13:54:11,167 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00007_nis_uncal.fits>,).
2025-05-13 13:54:11,168 - stpipe.Detector1Pipeline.ipc - INFO - Step skipped.
2025-05-13 13:54:11,289 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00007_nis_uncal.fits>,).
2025-05-13 13:54:11,304 - stpipe.Detector1Pipeline.superbias - INFO - Using SUPERBIAS reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits
2025-05-13 13:54:11,570 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias done
2025-05-13 13:54:11,706 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00007_nis_uncal.fits>,).
2025-05-13 13:54:11,739 - stpipe.Detector1Pipeline.refpix - INFO - NIR full frame data
2025-05-13 13:54:11,739 - stpipe.Detector1Pipeline.refpix - INFO - The following parameters are valid for this mode:
2025-05-13 13:54:11,740 - stpipe.Detector1Pipeline.refpix - INFO - use_side_ref_pixels = True
2025-05-13 13:54:11,740 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_columns = True
2025-05-13 13:54:11,741 - stpipe.Detector1Pipeline.refpix - INFO - side_smoothing_length = 11
2025-05-13 13:54:11,741 - stpipe.Detector1Pipeline.refpix - INFO - side_gain = 1.0
2025-05-13 13:54:11,742 - stpipe.Detector1Pipeline.refpix - INFO - The following parameter is not applicable and is ignored:
2025-05-13 13:54:11,742 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_rows = False
2025-05-13 13:54:15,626 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix done
2025-05-13 13:54:15,764 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00007_nis_uncal.fits>,).
2025-05-13 13:54:15,779 - stpipe.Detector1Pipeline.linearity - INFO - Using Linearity reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits
2025-05-13 13:54:15,814 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:54:15,815 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:54:15,818 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:54:16,473 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity done
2025-05-13 13:54:16,610 - stpipe.Detector1Pipeline.persistence - INFO - Step persistence running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00007_nis_uncal.fits>,).
2025-05-13 13:54:16,611 - stpipe.Detector1Pipeline.persistence - INFO - Step skipped.
2025-05-13 13:54:16,730 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00007_nis_uncal.fits>,).
2025-05-13 13:54:16,745 - stpipe.Detector1Pipeline.dark_current - INFO - Using DARK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits
2025-05-13 13:54:16,948 - stpipe.Detector1Pipeline.dark_current - INFO - Science data nints=1, ngroups=16, nframes=4, groupgap=0
2025-05-13 13:54:16,949 - stpipe.Detector1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=30, nframes=4, groupgap=0
2025-05-13 13:54:17,163 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current done
2025-05-13 13:54:17,303 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00007_nis_uncal.fits>,).
2025-05-13 13:54:17,349 - stpipe.Detector1Pipeline.charge_migration - INFO - Using signal_threshold: 21864.00
2025-05-13 13:54:17,847 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration done
2025-05-13 13:54:17,981 - stpipe.Detector1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00007_nis_uncal.fits>,).
2025-05-13 13:54:17,989 - stpipe.Detector1Pipeline.jump - INFO - CR rejection threshold = 8 sigma
2025-05-13 13:54:17,989 - stpipe.Detector1Pipeline.jump - INFO - Maximum cores to use = half
2025-05-13 13:54:18,064 - stpipe.Detector1Pipeline.jump - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:54:18,073 - stpipe.Detector1Pipeline.jump - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:54:18,232 - stpipe.Detector1Pipeline.jump - INFO - Executing two-point difference method
2025-05-13 13:54:18,233 - stpipe.Detector1Pipeline.jump - INFO - Creating 2 processes for jump detection
2025-05-13 13:54:21,960 - stpipe.Detector1Pipeline.jump - INFO - Flagging Snowballs
2025-05-13 13:54:22,162 - stpipe.Detector1Pipeline.jump - INFO - Total snowballs = 51
2025-05-13 13:54:22,163 - stpipe.Detector1Pipeline.jump - INFO - Total elapsed time = 3.92985 sec
2025-05-13 13:54:22,232 - stpipe.Detector1Pipeline.jump - INFO - The execution time in seconds: 4.242682
2025-05-13 13:54:22,235 - stpipe.Detector1Pipeline.jump - INFO - Step jump done
2025-05-13 13:54:22,368 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step clean_flicker_noise running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00007_nis_uncal.fits>,).
2025-05-13 13:54:22,368 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step skipped.
2025-05-13 13:54:22,487 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00007_nis_uncal.fits>,).
2025-05-13 13:54:22,550 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:54:22,551 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:54:22,574 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using algorithm = OLS_C
2025-05-13 13:54:22,575 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using weighting = optimal
2025-05-13 13:54:23,130 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of multiprocessing slices: 1
2025-05-13 13:54:28,530 - stpipe.Detector1Pipeline.ramp_fit - INFO - Ramp Fitting C Time: 5.396052360534668
2025-05-13 13:54:28,573 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit done
2025-05-13 13:54:28,710 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(2048, 2048) from jw01475006001_02201_00007_nis_uncal.fits>,).
2025-05-13 13:54:28,733 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:54:28,734 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:54:28,736 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:54:28,858 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 2048, 2048) from jw01475006001_02201_00007_nis_uncal.fits>,).
2025-05-13 13:54:28,883 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:54:28,884 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:54:28,886 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:54:28,991 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00007_nis_rateints.fits
2025-05-13 13:54:28,992 - stpipe.Detector1Pipeline - INFO - ... ending calwebb_detector1
2025-05-13 13:54:28,994 - stpipe.Detector1Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:54:29,099 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00007_nis_rate.fits
2025-05-13 13:54:29,099 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline done
2025-05-13 13:54:29,100 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:54:29,210 - CRDS - ERROR - Error determining best reference for 'pars-darkcurrentstep' = No match found.
2025-05-13 13:54:29,213 - stpipe - INFO - PARS-CHARGEMIGRATIONSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-chargemigrationstep_0018.asdf
2025-05-13 13:54:29,221 - stpipe - INFO - PARS-JUMPSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-jumpstep_0087.asdf
2025-05-13 13:54:29,231 - stpipe - INFO - PARS-DETECTOR1PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-detector1pipeline_0001.asdf
2025-05-13 13:54:29,247 - stpipe.Detector1Pipeline - INFO - Detector1Pipeline instance created.
2025-05-13 13:54:29,248 - stpipe.Detector1Pipeline.group_scale - INFO - GroupScaleStep instance created.
2025-05-13 13:54:29,248 - stpipe.Detector1Pipeline.dq_init - INFO - DQInitStep instance created.
2025-05-13 13:54:29,249 - stpipe.Detector1Pipeline.emicorr - INFO - EmiCorrStep instance created.
2025-05-13 13:54:29,251 - stpipe.Detector1Pipeline.saturation - INFO - SaturationStep instance created.
2025-05-13 13:54:29,252 - stpipe.Detector1Pipeline.ipc - INFO - IPCStep instance created.
2025-05-13 13:54:29,252 - stpipe.Detector1Pipeline.superbias - INFO - SuperBiasStep instance created.
2025-05-13 13:54:29,253 - stpipe.Detector1Pipeline.refpix - INFO - RefPixStep instance created.
2025-05-13 13:54:29,254 - stpipe.Detector1Pipeline.rscd - INFO - RscdStep instance created.
2025-05-13 13:54:29,255 - stpipe.Detector1Pipeline.firstframe - INFO - FirstFrameStep instance created.
2025-05-13 13:54:29,256 - stpipe.Detector1Pipeline.lastframe - INFO - LastFrameStep instance created.
2025-05-13 13:54:29,257 - stpipe.Detector1Pipeline.linearity - INFO - LinearityStep instance created.
2025-05-13 13:54:29,257 - stpipe.Detector1Pipeline.dark_current - INFO - DarkCurrentStep instance created.
2025-05-13 13:54:29,258 - stpipe.Detector1Pipeline.reset - INFO - ResetStep instance created.
2025-05-13 13:54:29,259 - stpipe.Detector1Pipeline.persistence - INFO - PersistenceStep instance created.
2025-05-13 13:54:29,260 - stpipe.Detector1Pipeline.charge_migration - INFO - ChargeMigrationStep instance created.
2025-05-13 13:54:29,262 - stpipe.Detector1Pipeline.jump - INFO - JumpStep instance created.
2025-05-13 13:54:29,263 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - CleanFlickerNoiseStep instance created.
2025-05-13 13:54:29,264 - stpipe.Detector1Pipeline.ramp_fit - INFO - RampFitStep instance created.
2025-05-13 13:54:29,265 - stpipe.Detector1Pipeline.gain_scale - INFO - GainScaleStep instance created.
2025-05-13 13:54:29,401 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline running with args ('./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00008_nis_uncal.fits',).
2025-05-13 13:54:29,427 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage1
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_calibrated_ramp: False
steps:
group_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dq_init:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
emicorr:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
algorithm: sequential
nints_to_phase: None
nbins: None
scale_reference: True
onthefly_corr_freq: None
use_n_cycles: 3
fit_ints_separately: False
user_supplied_reffile: None
save_intermediate_results: False
saturation:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
n_pix_grow_sat: 1
use_readpatt: True
ipc:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
superbias:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
refpix:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
odd_even_columns: True
use_side_ref_pixels: True
side_smoothing_length: 11
side_gain: 1.0
odd_even_rows: True
ovr_corr_mitigation_ftr: 3.0
preserve_irs2_refpix: False
irs2_mean_subtraction: False
refpix_algorithm: median
sigreject: 4.0
gaussmooth: 1.0
halfwidth: 30
rscd:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
type: baseline
firstframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
bright_use_group1: False
lastframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
linearity:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_current:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_output: None
average_dark_current: None
reset:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
persistence:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
input_trapsfilled: ''
flag_pers_cutoff: 40.0
save_persistence: False
save_trapsfilled: True
modify_input: False
charge_migration:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
signal_threshold: 21864.0
jump:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
rejection_threshold: 8.0
three_group_rejection_threshold: 6.0
four_group_rejection_threshold: 5.0
maximum_cores: half
flag_4_neighbors: False
max_jump_to_flag_neighbors: 200.0
min_jump_to_flag_neighbors: 10.0
after_jump_flag_dn1: 1000
after_jump_flag_time1: 90
after_jump_flag_dn2: 0
after_jump_flag_time2: 0
expand_large_events: True
min_sat_area: 5
min_jump_area: 15.0
expand_factor: 1.75
use_ellipses: False
sat_required_snowball: True
min_sat_radius_extend: 5.0
sat_expand: 0
edge_size: 20
mask_snowball_core_next_int: True
snowball_time_masked_next_int: 4000
find_showers: False
max_shower_amplitude: 4.0
extend_snr_threshold: 1.2
extend_min_area: 90
extend_inner_radius: 1.0
extend_outer_radius: 2.6
extend_ellipse_expand_ratio: 1.1
time_masked_after_shower: 15.0
min_diffs_single_pass: 10
max_extended_radius: 100
minimum_groups: 3
minimum_sigclip_groups: 100
only_use_ints: True
clean_flicker_noise:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
fit_method: median
fit_by_channel: False
background_method: median
background_box_size: None
mask_science_regions: False
apply_flat_field: False
n_sigma: 2.0
fit_histogram: False
single_mask: True
user_mask: None
save_mask: False
save_background: False
save_noise: False
ramp_fit:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
algorithm: OLS_C
int_name: ''
save_opt: False
opt_name: ''
suppress_one_group: True
firstgroup: None
lastgroup: None
maximum_cores: '1'
gain_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
2025-05-13 13:54:29,529 - stpipe.Detector1Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00008_nis_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'sirskernel', 'superbias']
2025-05-13 13:54:29,532 - stpipe.Detector1Pipeline - INFO - Prefetch for DARK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits'.
2025-05-13 13:54:29,533 - stpipe.Detector1Pipeline - INFO - Prefetch for GAIN reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits'.
2025-05-13 13:54:29,533 - stpipe.Detector1Pipeline - INFO - Prefetch for LINEARITY reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits'.
2025-05-13 13:54:29,534 - stpipe.Detector1Pipeline - INFO - Prefetch for MASK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits'.
2025-05-13 13:54:29,534 - stpipe.Detector1Pipeline - INFO - Prefetch for READNOISE reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits'.
2025-05-13 13:54:29,535 - stpipe.Detector1Pipeline - INFO - Prefetch for REFPIX reference file is 'N/A'.
2025-05-13 13:54:29,535 - stpipe.Detector1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'.
2025-05-13 13:54:29,536 - stpipe.Detector1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'.
2025-05-13 13:54:29,536 - stpipe.Detector1Pipeline - INFO - Prefetch for SATURATION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits'.
2025-05-13 13:54:29,537 - stpipe.Detector1Pipeline - INFO - Prefetch for SIRSKERNEL reference file is 'N/A'.
2025-05-13 13:54:29,538 - stpipe.Detector1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits'.
2025-05-13 13:54:29,539 - stpipe.Detector1Pipeline - INFO - Starting calwebb_detector1 ...
2025-05-13 13:54:29,835 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00008_nis_uncal.fits>,).
2025-05-13 13:54:29,843 - stpipe.Detector1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed
2025-05-13 13:54:29,843 - stpipe.Detector1Pipeline.group_scale - INFO - Step will be skipped
2025-05-13 13:54:29,844 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale done
2025-05-13 13:54:29,964 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00008_nis_uncal.fits>,).
2025-05-13 13:54:29,980 - stpipe.Detector1Pipeline.dq_init - INFO - Using MASK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits
2025-05-13 13:54:30,214 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init done
2025-05-13 13:54:30,350 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00008_nis_uncal.fits>,).
2025-05-13 13:54:30,365 - stpipe.Detector1Pipeline.saturation - INFO - Using SATURATION reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits
2025-05-13 13:54:30,390 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:54:30,390 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:54:30,394 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:54:30,421 - stpipe.Detector1Pipeline.saturation - INFO - Using read_pattern with nframes 4
2025-05-13 13:54:31,471 - stpipe.Detector1Pipeline.saturation - INFO - Detected 4334 saturated pixels
2025-05-13 13:54:31,501 - stpipe.Detector1Pipeline.saturation - INFO - Detected 1 A/D floor pixels
2025-05-13 13:54:31,507 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation done
2025-05-13 13:54:31,644 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00008_nis_uncal.fits>,).
2025-05-13 13:54:31,644 - stpipe.Detector1Pipeline.ipc - INFO - Step skipped.
2025-05-13 13:54:31,767 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00008_nis_uncal.fits>,).
2025-05-13 13:54:31,782 - stpipe.Detector1Pipeline.superbias - INFO - Using SUPERBIAS reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits
2025-05-13 13:54:32,079 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias done
2025-05-13 13:54:32,214 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00008_nis_uncal.fits>,).
2025-05-13 13:54:32,248 - stpipe.Detector1Pipeline.refpix - INFO - NIR full frame data
2025-05-13 13:54:32,248 - stpipe.Detector1Pipeline.refpix - INFO - The following parameters are valid for this mode:
2025-05-13 13:54:32,249 - stpipe.Detector1Pipeline.refpix - INFO - use_side_ref_pixels = True
2025-05-13 13:54:32,249 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_columns = True
2025-05-13 13:54:32,250 - stpipe.Detector1Pipeline.refpix - INFO - side_smoothing_length = 11
2025-05-13 13:54:32,250 - stpipe.Detector1Pipeline.refpix - INFO - side_gain = 1.0
2025-05-13 13:54:32,250 - stpipe.Detector1Pipeline.refpix - INFO - The following parameter is not applicable and is ignored:
2025-05-13 13:54:32,251 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_rows = False
2025-05-13 13:54:36,051 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix done
2025-05-13 13:54:36,192 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00008_nis_uncal.fits>,).
2025-05-13 13:54:36,208 - stpipe.Detector1Pipeline.linearity - INFO - Using Linearity reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits
2025-05-13 13:54:36,243 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:54:36,244 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:54:36,248 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:54:36,899 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity done
2025-05-13 13:54:37,033 - stpipe.Detector1Pipeline.persistence - INFO - Step persistence running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00008_nis_uncal.fits>,).
2025-05-13 13:54:37,034 - stpipe.Detector1Pipeline.persistence - INFO - Step skipped.
2025-05-13 13:54:37,155 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00008_nis_uncal.fits>,).
2025-05-13 13:54:37,170 - stpipe.Detector1Pipeline.dark_current - INFO - Using DARK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits
2025-05-13 13:54:37,385 - stpipe.Detector1Pipeline.dark_current - INFO - Science data nints=1, ngroups=16, nframes=4, groupgap=0
2025-05-13 13:54:37,386 - stpipe.Detector1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=30, nframes=4, groupgap=0
2025-05-13 13:54:37,579 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current done
2025-05-13 13:54:37,722 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00008_nis_uncal.fits>,).
2025-05-13 13:54:37,768 - stpipe.Detector1Pipeline.charge_migration - INFO - Using signal_threshold: 21864.00
2025-05-13 13:54:38,277 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration done
2025-05-13 13:54:38,413 - stpipe.Detector1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00008_nis_uncal.fits>,).
2025-05-13 13:54:38,421 - stpipe.Detector1Pipeline.jump - INFO - CR rejection threshold = 8 sigma
2025-05-13 13:54:38,421 - stpipe.Detector1Pipeline.jump - INFO - Maximum cores to use = half
2025-05-13 13:54:38,491 - stpipe.Detector1Pipeline.jump - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:54:38,499 - stpipe.Detector1Pipeline.jump - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:54:38,658 - stpipe.Detector1Pipeline.jump - INFO - Executing two-point difference method
2025-05-13 13:54:38,658 - stpipe.Detector1Pipeline.jump - INFO - Creating 2 processes for jump detection
2025-05-13 13:54:42,357 - stpipe.Detector1Pipeline.jump - INFO - Flagging Snowballs
2025-05-13 13:54:42,552 - stpipe.Detector1Pipeline.jump - INFO - Total snowballs = 53
2025-05-13 13:54:42,553 - stpipe.Detector1Pipeline.jump - INFO - Total elapsed time = 3.89452 sec
2025-05-13 13:54:42,622 - stpipe.Detector1Pipeline.jump - INFO - The execution time in seconds: 4.200781
2025-05-13 13:54:42,625 - stpipe.Detector1Pipeline.jump - INFO - Step jump done
2025-05-13 13:54:42,760 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step clean_flicker_noise running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00008_nis_uncal.fits>,).
2025-05-13 13:54:42,761 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step skipped.
2025-05-13 13:54:42,880 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00008_nis_uncal.fits>,).
2025-05-13 13:54:42,929 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:54:42,930 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:54:42,954 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using algorithm = OLS_C
2025-05-13 13:54:42,954 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using weighting = optimal
2025-05-13 13:54:43,534 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of multiprocessing slices: 1
2025-05-13 13:54:49,007 - stpipe.Detector1Pipeline.ramp_fit - INFO - Ramp Fitting C Time: 5.468435287475586
2025-05-13 13:54:49,049 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit done
2025-05-13 13:54:49,185 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(2048, 2048) from jw01475006001_02201_00008_nis_uncal.fits>,).
2025-05-13 13:54:49,209 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:54:49,209 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:54:49,211 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:54:49,332 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 2048, 2048) from jw01475006001_02201_00008_nis_uncal.fits>,).
2025-05-13 13:54:49,359 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:54:49,359 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:54:49,361 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:54:49,473 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00008_nis_rateints.fits
2025-05-13 13:54:49,473 - stpipe.Detector1Pipeline - INFO - ... ending calwebb_detector1
2025-05-13 13:54:49,476 - stpipe.Detector1Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:54:49,582 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00008_nis_rate.fits
2025-05-13 13:54:49,583 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline done
2025-05-13 13:54:49,584 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:54:49,695 - CRDS - ERROR - Error determining best reference for 'pars-darkcurrentstep' = No match found.
2025-05-13 13:54:49,698 - stpipe - INFO - PARS-CHARGEMIGRATIONSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-chargemigrationstep_0018.asdf
2025-05-13 13:54:49,706 - stpipe - INFO - PARS-JUMPSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-jumpstep_0087.asdf
2025-05-13 13:54:49,716 - stpipe - INFO - PARS-DETECTOR1PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-detector1pipeline_0001.asdf
2025-05-13 13:54:49,732 - stpipe.Detector1Pipeline - INFO - Detector1Pipeline instance created.
2025-05-13 13:54:49,733 - stpipe.Detector1Pipeline.group_scale - INFO - GroupScaleStep instance created.
2025-05-13 13:54:49,734 - stpipe.Detector1Pipeline.dq_init - INFO - DQInitStep instance created.
2025-05-13 13:54:49,735 - stpipe.Detector1Pipeline.emicorr - INFO - EmiCorrStep instance created.
2025-05-13 13:54:49,736 - stpipe.Detector1Pipeline.saturation - INFO - SaturationStep instance created.
2025-05-13 13:54:49,737 - stpipe.Detector1Pipeline.ipc - INFO - IPCStep instance created.
2025-05-13 13:54:49,738 - stpipe.Detector1Pipeline.superbias - INFO - SuperBiasStep instance created.
2025-05-13 13:54:49,739 - stpipe.Detector1Pipeline.refpix - INFO - RefPixStep instance created.
2025-05-13 13:54:49,740 - stpipe.Detector1Pipeline.rscd - INFO - RscdStep instance created.
2025-05-13 13:54:49,741 - stpipe.Detector1Pipeline.firstframe - INFO - FirstFrameStep instance created.
2025-05-13 13:54:49,742 - stpipe.Detector1Pipeline.lastframe - INFO - LastFrameStep instance created.
2025-05-13 13:54:49,743 - stpipe.Detector1Pipeline.linearity - INFO - LinearityStep instance created.
2025-05-13 13:54:49,744 - stpipe.Detector1Pipeline.dark_current - INFO - DarkCurrentStep instance created.
2025-05-13 13:54:49,744 - stpipe.Detector1Pipeline.reset - INFO - ResetStep instance created.
2025-05-13 13:54:49,746 - stpipe.Detector1Pipeline.persistence - INFO - PersistenceStep instance created.
2025-05-13 13:54:49,746 - stpipe.Detector1Pipeline.charge_migration - INFO - ChargeMigrationStep instance created.
2025-05-13 13:54:49,749 - stpipe.Detector1Pipeline.jump - INFO - JumpStep instance created.
2025-05-13 13:54:49,750 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - CleanFlickerNoiseStep instance created.
2025-05-13 13:54:49,751 - stpipe.Detector1Pipeline.ramp_fit - INFO - RampFitStep instance created.
2025-05-13 13:54:49,752 - stpipe.Detector1Pipeline.gain_scale - INFO - GainScaleStep instance created.
2025-05-13 13:54:49,886 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline running with args ('./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00009_nis_uncal.fits',).
2025-05-13 13:54:49,908 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage1
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_calibrated_ramp: False
steps:
group_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dq_init:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
emicorr:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
algorithm: sequential
nints_to_phase: None
nbins: None
scale_reference: True
onthefly_corr_freq: None
use_n_cycles: 3
fit_ints_separately: False
user_supplied_reffile: None
save_intermediate_results: False
saturation:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
n_pix_grow_sat: 1
use_readpatt: True
ipc:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
superbias:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
refpix:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
odd_even_columns: True
use_side_ref_pixels: True
side_smoothing_length: 11
side_gain: 1.0
odd_even_rows: True
ovr_corr_mitigation_ftr: 3.0
preserve_irs2_refpix: False
irs2_mean_subtraction: False
refpix_algorithm: median
sigreject: 4.0
gaussmooth: 1.0
halfwidth: 30
rscd:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
type: baseline
firstframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
bright_use_group1: False
lastframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
linearity:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_current:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_output: None
average_dark_current: None
reset:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
persistence:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
input_trapsfilled: ''
flag_pers_cutoff: 40.0
save_persistence: False
save_trapsfilled: True
modify_input: False
charge_migration:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
signal_threshold: 21864.0
jump:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
rejection_threshold: 8.0
three_group_rejection_threshold: 6.0
four_group_rejection_threshold: 5.0
maximum_cores: half
flag_4_neighbors: False
max_jump_to_flag_neighbors: 200.0
min_jump_to_flag_neighbors: 10.0
after_jump_flag_dn1: 1000
after_jump_flag_time1: 90
after_jump_flag_dn2: 0
after_jump_flag_time2: 0
expand_large_events: True
min_sat_area: 5
min_jump_area: 15.0
expand_factor: 1.75
use_ellipses: False
sat_required_snowball: True
min_sat_radius_extend: 5.0
sat_expand: 0
edge_size: 20
mask_snowball_core_next_int: True
snowball_time_masked_next_int: 4000
find_showers: False
max_shower_amplitude: 4.0
extend_snr_threshold: 1.2
extend_min_area: 90
extend_inner_radius: 1.0
extend_outer_radius: 2.6
extend_ellipse_expand_ratio: 1.1
time_masked_after_shower: 15.0
min_diffs_single_pass: 10
max_extended_radius: 100
minimum_groups: 3
minimum_sigclip_groups: 100
only_use_ints: True
clean_flicker_noise:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
fit_method: median
fit_by_channel: False
background_method: median
background_box_size: None
mask_science_regions: False
apply_flat_field: False
n_sigma: 2.0
fit_histogram: False
single_mask: True
user_mask: None
save_mask: False
save_background: False
save_noise: False
ramp_fit:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
algorithm: OLS_C
int_name: ''
save_opt: False
opt_name: ''
suppress_one_group: True
firstgroup: None
lastgroup: None
maximum_cores: '1'
gain_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
2025-05-13 13:54:50,010 - stpipe.Detector1Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00009_nis_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'sirskernel', 'superbias']
2025-05-13 13:54:50,013 - stpipe.Detector1Pipeline - INFO - Prefetch for DARK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits'.
2025-05-13 13:54:50,014 - stpipe.Detector1Pipeline - INFO - Prefetch for GAIN reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits'.
2025-05-13 13:54:50,014 - stpipe.Detector1Pipeline - INFO - Prefetch for LINEARITY reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits'.
2025-05-13 13:54:50,015 - stpipe.Detector1Pipeline - INFO - Prefetch for MASK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits'.
2025-05-13 13:54:50,015 - stpipe.Detector1Pipeline - INFO - Prefetch for READNOISE reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits'.
2025-05-13 13:54:50,016 - stpipe.Detector1Pipeline - INFO - Prefetch for REFPIX reference file is 'N/A'.
2025-05-13 13:54:50,016 - stpipe.Detector1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'.
2025-05-13 13:54:50,017 - stpipe.Detector1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'.
2025-05-13 13:54:50,017 - stpipe.Detector1Pipeline - INFO - Prefetch for SATURATION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits'.
2025-05-13 13:54:50,018 - stpipe.Detector1Pipeline - INFO - Prefetch for SIRSKERNEL reference file is 'N/A'.
2025-05-13 13:54:50,018 - stpipe.Detector1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits'.
2025-05-13 13:54:50,019 - stpipe.Detector1Pipeline - INFO - Starting calwebb_detector1 ...
2025-05-13 13:54:50,314 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00009_nis_uncal.fits>,).
2025-05-13 13:54:50,322 - stpipe.Detector1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed
2025-05-13 13:54:50,322 - stpipe.Detector1Pipeline.group_scale - INFO - Step will be skipped
2025-05-13 13:54:50,324 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale done
2025-05-13 13:54:50,447 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00009_nis_uncal.fits>,).
2025-05-13 13:54:50,462 - stpipe.Detector1Pipeline.dq_init - INFO - Using MASK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits
2025-05-13 13:54:50,657 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init done
2025-05-13 13:54:50,793 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00009_nis_uncal.fits>,).
2025-05-13 13:54:50,809 - stpipe.Detector1Pipeline.saturation - INFO - Using SATURATION reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits
2025-05-13 13:54:50,834 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:54:50,834 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:54:50,838 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:54:50,878 - stpipe.Detector1Pipeline.saturation - INFO - Using read_pattern with nframes 4
2025-05-13 13:54:51,680 - stpipe.Detector1Pipeline.saturation - INFO - Detected 5184 saturated pixels
2025-05-13 13:54:51,704 - stpipe.Detector1Pipeline.saturation - INFO - Detected 1 A/D floor pixels
2025-05-13 13:54:51,709 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation done
2025-05-13 13:54:51,849 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00009_nis_uncal.fits>,).
2025-05-13 13:54:51,850 - stpipe.Detector1Pipeline.ipc - INFO - Step skipped.
2025-05-13 13:54:51,969 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00009_nis_uncal.fits>,).
2025-05-13 13:54:51,984 - stpipe.Detector1Pipeline.superbias - INFO - Using SUPERBIAS reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits
2025-05-13 13:54:52,246 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias done
2025-05-13 13:54:52,380 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00009_nis_uncal.fits>,).
2025-05-13 13:54:52,413 - stpipe.Detector1Pipeline.refpix - INFO - NIR full frame data
2025-05-13 13:54:52,414 - stpipe.Detector1Pipeline.refpix - INFO - The following parameters are valid for this mode:
2025-05-13 13:54:52,415 - stpipe.Detector1Pipeline.refpix - INFO - use_side_ref_pixels = True
2025-05-13 13:54:52,415 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_columns = True
2025-05-13 13:54:52,415 - stpipe.Detector1Pipeline.refpix - INFO - side_smoothing_length = 11
2025-05-13 13:54:52,416 - stpipe.Detector1Pipeline.refpix - INFO - side_gain = 1.0
2025-05-13 13:54:52,416 - stpipe.Detector1Pipeline.refpix - INFO - The following parameter is not applicable and is ignored:
2025-05-13 13:54:52,417 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_rows = False
2025-05-13 13:54:56,277 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix done
2025-05-13 13:54:56,414 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00009_nis_uncal.fits>,).
2025-05-13 13:54:56,429 - stpipe.Detector1Pipeline.linearity - INFO - Using Linearity reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits
2025-05-13 13:54:56,464 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:54:56,465 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:54:56,468 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:54:57,142 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity done
2025-05-13 13:54:57,280 - stpipe.Detector1Pipeline.persistence - INFO - Step persistence running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00009_nis_uncal.fits>,).
2025-05-13 13:54:57,280 - stpipe.Detector1Pipeline.persistence - INFO - Step skipped.
2025-05-13 13:54:57,401 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00009_nis_uncal.fits>,).
2025-05-13 13:54:57,417 - stpipe.Detector1Pipeline.dark_current - INFO - Using DARK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits
2025-05-13 13:54:57,618 - stpipe.Detector1Pipeline.dark_current - INFO - Science data nints=1, ngroups=16, nframes=4, groupgap=0
2025-05-13 13:54:57,618 - stpipe.Detector1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=30, nframes=4, groupgap=0
2025-05-13 13:54:57,830 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current done
2025-05-13 13:54:57,973 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00009_nis_uncal.fits>,).
2025-05-13 13:54:58,006 - stpipe.Detector1Pipeline.charge_migration - INFO - Using signal_threshold: 21864.00
2025-05-13 13:54:58,595 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration done
2025-05-13 13:54:58,731 - stpipe.Detector1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00009_nis_uncal.fits>,).
2025-05-13 13:54:58,738 - stpipe.Detector1Pipeline.jump - INFO - CR rejection threshold = 8 sigma
2025-05-13 13:54:58,738 - stpipe.Detector1Pipeline.jump - INFO - Maximum cores to use = half
2025-05-13 13:54:58,794 - stpipe.Detector1Pipeline.jump - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:54:58,802 - stpipe.Detector1Pipeline.jump - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:54:58,962 - stpipe.Detector1Pipeline.jump - INFO - Executing two-point difference method
2025-05-13 13:54:58,963 - stpipe.Detector1Pipeline.jump - INFO - Creating 2 processes for jump detection
2025-05-13 13:55:02,776 - stpipe.Detector1Pipeline.jump - INFO - Flagging Snowballs
2025-05-13 13:55:03,019 - stpipe.Detector1Pipeline.jump - INFO - Total snowballs = 40
2025-05-13 13:55:03,020 - stpipe.Detector1Pipeline.jump - INFO - Total elapsed time = 4.05748 sec
2025-05-13 13:55:03,089 - stpipe.Detector1Pipeline.jump - INFO - The execution time in seconds: 4.351283
2025-05-13 13:55:03,093 - stpipe.Detector1Pipeline.jump - INFO - Step jump done
2025-05-13 13:55:03,228 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step clean_flicker_noise running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00009_nis_uncal.fits>,).
2025-05-13 13:55:03,229 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step skipped.
2025-05-13 13:55:03,353 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00009_nis_uncal.fits>,).
2025-05-13 13:55:03,416 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:55:03,416 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:55:03,440 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using algorithm = OLS_C
2025-05-13 13:55:03,440 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using weighting = optimal
2025-05-13 13:55:04,025 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of multiprocessing slices: 1
2025-05-13 13:55:09,479 - stpipe.Detector1Pipeline.ramp_fit - INFO - Ramp Fitting C Time: 5.449434041976929
2025-05-13 13:55:09,521 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit done
2025-05-13 13:55:09,660 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(2048, 2048) from jw01475006001_02201_00009_nis_uncal.fits>,).
2025-05-13 13:55:09,684 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:55:09,684 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:55:09,686 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:55:09,811 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 2048, 2048) from jw01475006001_02201_00009_nis_uncal.fits>,).
2025-05-13 13:55:09,836 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:55:09,837 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:55:09,838 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:55:09,945 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00009_nis_rateints.fits
2025-05-13 13:55:09,945 - stpipe.Detector1Pipeline - INFO - ... ending calwebb_detector1
2025-05-13 13:55:09,947 - stpipe.Detector1Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:55:10,053 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00009_nis_rate.fits
2025-05-13 13:55:10,053 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline done
2025-05-13 13:55:10,054 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:55:10,163 - CRDS - ERROR - Error determining best reference for 'pars-darkcurrentstep' = No match found.
2025-05-13 13:55:10,166 - stpipe - INFO - PARS-CHARGEMIGRATIONSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-chargemigrationstep_0018.asdf
2025-05-13 13:55:10,174 - stpipe - INFO - PARS-JUMPSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-jumpstep_0087.asdf
2025-05-13 13:55:10,184 - stpipe - INFO - PARS-DETECTOR1PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-detector1pipeline_0001.asdf
2025-05-13 13:55:10,200 - stpipe.Detector1Pipeline - INFO - Detector1Pipeline instance created.
2025-05-13 13:55:10,201 - stpipe.Detector1Pipeline.group_scale - INFO - GroupScaleStep instance created.
2025-05-13 13:55:10,202 - stpipe.Detector1Pipeline.dq_init - INFO - DQInitStep instance created.
2025-05-13 13:55:10,203 - stpipe.Detector1Pipeline.emicorr - INFO - EmiCorrStep instance created.
2025-05-13 13:55:10,204 - stpipe.Detector1Pipeline.saturation - INFO - SaturationStep instance created.
2025-05-13 13:55:10,205 - stpipe.Detector1Pipeline.ipc - INFO - IPCStep instance created.
2025-05-13 13:55:10,206 - stpipe.Detector1Pipeline.superbias - INFO - SuperBiasStep instance created.
2025-05-13 13:55:10,207 - stpipe.Detector1Pipeline.refpix - INFO - RefPixStep instance created.
2025-05-13 13:55:10,208 - stpipe.Detector1Pipeline.rscd - INFO - RscdStep instance created.
2025-05-13 13:55:10,209 - stpipe.Detector1Pipeline.firstframe - INFO - FirstFrameStep instance created.
2025-05-13 13:55:10,210 - stpipe.Detector1Pipeline.lastframe - INFO - LastFrameStep instance created.
2025-05-13 13:55:10,211 - stpipe.Detector1Pipeline.linearity - INFO - LinearityStep instance created.
2025-05-13 13:55:10,211 - stpipe.Detector1Pipeline.dark_current - INFO - DarkCurrentStep instance created.
2025-05-13 13:55:10,212 - stpipe.Detector1Pipeline.reset - INFO - ResetStep instance created.
2025-05-13 13:55:10,213 - stpipe.Detector1Pipeline.persistence - INFO - PersistenceStep instance created.
2025-05-13 13:55:10,214 - stpipe.Detector1Pipeline.charge_migration - INFO - ChargeMigrationStep instance created.
2025-05-13 13:55:10,217 - stpipe.Detector1Pipeline.jump - INFO - JumpStep instance created.
2025-05-13 13:55:10,218 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - CleanFlickerNoiseStep instance created.
2025-05-13 13:55:10,219 - stpipe.Detector1Pipeline.ramp_fit - INFO - RampFitStep instance created.
2025-05-13 13:55:10,220 - stpipe.Detector1Pipeline.gain_scale - INFO - GainScaleStep instance created.
2025-05-13 13:55:10,351 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline running with args ('./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00010_nis_uncal.fits',).
2025-05-13 13:55:10,373 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage1
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_calibrated_ramp: False
steps:
group_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dq_init:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
emicorr:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
algorithm: sequential
nints_to_phase: None
nbins: None
scale_reference: True
onthefly_corr_freq: None
use_n_cycles: 3
fit_ints_separately: False
user_supplied_reffile: None
save_intermediate_results: False
saturation:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
n_pix_grow_sat: 1
use_readpatt: True
ipc:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
superbias:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
refpix:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
odd_even_columns: True
use_side_ref_pixels: True
side_smoothing_length: 11
side_gain: 1.0
odd_even_rows: True
ovr_corr_mitigation_ftr: 3.0
preserve_irs2_refpix: False
irs2_mean_subtraction: False
refpix_algorithm: median
sigreject: 4.0
gaussmooth: 1.0
halfwidth: 30
rscd:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
type: baseline
firstframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
bright_use_group1: False
lastframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
linearity:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_current:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_output: None
average_dark_current: None
reset:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
persistence:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
input_trapsfilled: ''
flag_pers_cutoff: 40.0
save_persistence: False
save_trapsfilled: True
modify_input: False
charge_migration:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
signal_threshold: 21864.0
jump:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
rejection_threshold: 8.0
three_group_rejection_threshold: 6.0
four_group_rejection_threshold: 5.0
maximum_cores: half
flag_4_neighbors: False
max_jump_to_flag_neighbors: 200.0
min_jump_to_flag_neighbors: 10.0
after_jump_flag_dn1: 1000
after_jump_flag_time1: 90
after_jump_flag_dn2: 0
after_jump_flag_time2: 0
expand_large_events: True
min_sat_area: 5
min_jump_area: 15.0
expand_factor: 1.75
use_ellipses: False
sat_required_snowball: True
min_sat_radius_extend: 5.0
sat_expand: 0
edge_size: 20
mask_snowball_core_next_int: True
snowball_time_masked_next_int: 4000
find_showers: False
max_shower_amplitude: 4.0
extend_snr_threshold: 1.2
extend_min_area: 90
extend_inner_radius: 1.0
extend_outer_radius: 2.6
extend_ellipse_expand_ratio: 1.1
time_masked_after_shower: 15.0
min_diffs_single_pass: 10
max_extended_radius: 100
minimum_groups: 3
minimum_sigclip_groups: 100
only_use_ints: True
clean_flicker_noise:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
fit_method: median
fit_by_channel: False
background_method: median
background_box_size: None
mask_science_regions: False
apply_flat_field: False
n_sigma: 2.0
fit_histogram: False
single_mask: True
user_mask: None
save_mask: False
save_background: False
save_noise: False
ramp_fit:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
algorithm: OLS_C
int_name: ''
save_opt: False
opt_name: ''
suppress_one_group: True
firstgroup: None
lastgroup: None
maximum_cores: '1'
gain_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
2025-05-13 13:55:10,475 - stpipe.Detector1Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00010_nis_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'sirskernel', 'superbias']
2025-05-13 13:55:10,478 - stpipe.Detector1Pipeline - INFO - Prefetch for DARK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits'.
2025-05-13 13:55:10,478 - stpipe.Detector1Pipeline - INFO - Prefetch for GAIN reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits'.
2025-05-13 13:55:10,479 - stpipe.Detector1Pipeline - INFO - Prefetch for LINEARITY reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits'.
2025-05-13 13:55:10,479 - stpipe.Detector1Pipeline - INFO - Prefetch for MASK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits'.
2025-05-13 13:55:10,480 - stpipe.Detector1Pipeline - INFO - Prefetch for READNOISE reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits'.
2025-05-13 13:55:10,481 - stpipe.Detector1Pipeline - INFO - Prefetch for REFPIX reference file is 'N/A'.
2025-05-13 13:55:10,481 - stpipe.Detector1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'.
2025-05-13 13:55:10,482 - stpipe.Detector1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'.
2025-05-13 13:55:10,482 - stpipe.Detector1Pipeline - INFO - Prefetch for SATURATION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits'.
2025-05-13 13:55:10,483 - stpipe.Detector1Pipeline - INFO - Prefetch for SIRSKERNEL reference file is 'N/A'.
2025-05-13 13:55:10,483 - stpipe.Detector1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits'.
2025-05-13 13:55:10,484 - stpipe.Detector1Pipeline - INFO - Starting calwebb_detector1 ...
2025-05-13 13:55:10,780 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00010_nis_uncal.fits>,).
2025-05-13 13:55:10,787 - stpipe.Detector1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed
2025-05-13 13:55:10,788 - stpipe.Detector1Pipeline.group_scale - INFO - Step will be skipped
2025-05-13 13:55:10,790 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale done
2025-05-13 13:55:10,913 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00010_nis_uncal.fits>,).
2025-05-13 13:55:10,929 - stpipe.Detector1Pipeline.dq_init - INFO - Using MASK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits
2025-05-13 13:55:11,101 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init done
2025-05-13 13:55:11,236 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00010_nis_uncal.fits>,).
2025-05-13 13:55:11,251 - stpipe.Detector1Pipeline.saturation - INFO - Using SATURATION reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits
2025-05-13 13:55:11,276 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:55:11,277 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:55:11,280 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:55:11,369 - stpipe.Detector1Pipeline.saturation - INFO - Using read_pattern with nframes 4
2025-05-13 13:55:12,169 - stpipe.Detector1Pipeline.saturation - INFO - Detected 4877 saturated pixels
2025-05-13 13:55:12,200 - stpipe.Detector1Pipeline.saturation - INFO - Detected 1 A/D floor pixels
2025-05-13 13:55:12,205 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation done
2025-05-13 13:55:12,341 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00010_nis_uncal.fits>,).
2025-05-13 13:55:12,342 - stpipe.Detector1Pipeline.ipc - INFO - Step skipped.
2025-05-13 13:55:12,467 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00010_nis_uncal.fits>,).
2025-05-13 13:55:12,482 - stpipe.Detector1Pipeline.superbias - INFO - Using SUPERBIAS reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits
2025-05-13 13:55:12,731 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias done
2025-05-13 13:55:12,868 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00010_nis_uncal.fits>,).
2025-05-13 13:55:12,901 - stpipe.Detector1Pipeline.refpix - INFO - NIR full frame data
2025-05-13 13:55:12,901 - stpipe.Detector1Pipeline.refpix - INFO - The following parameters are valid for this mode:
2025-05-13 13:55:12,902 - stpipe.Detector1Pipeline.refpix - INFO - use_side_ref_pixels = True
2025-05-13 13:55:12,902 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_columns = True
2025-05-13 13:55:12,903 - stpipe.Detector1Pipeline.refpix - INFO - side_smoothing_length = 11
2025-05-13 13:55:12,903 - stpipe.Detector1Pipeline.refpix - INFO - side_gain = 1.0
2025-05-13 13:55:12,904 - stpipe.Detector1Pipeline.refpix - INFO - The following parameter is not applicable and is ignored:
2025-05-13 13:55:12,904 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_rows = False
2025-05-13 13:55:16,799 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix done
2025-05-13 13:55:16,940 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00010_nis_uncal.fits>,).
2025-05-13 13:55:16,956 - stpipe.Detector1Pipeline.linearity - INFO - Using Linearity reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits
2025-05-13 13:55:16,990 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:55:16,991 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:55:16,995 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:55:17,650 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity done
2025-05-13 13:55:17,792 - stpipe.Detector1Pipeline.persistence - INFO - Step persistence running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00010_nis_uncal.fits>,).
2025-05-13 13:55:17,792 - stpipe.Detector1Pipeline.persistence - INFO - Step skipped.
2025-05-13 13:55:17,921 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00010_nis_uncal.fits>,).
2025-05-13 13:55:17,936 - stpipe.Detector1Pipeline.dark_current - INFO - Using DARK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits
2025-05-13 13:55:18,154 - stpipe.Detector1Pipeline.dark_current - INFO - Science data nints=1, ngroups=16, nframes=4, groupgap=0
2025-05-13 13:55:18,155 - stpipe.Detector1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=30, nframes=4, groupgap=0
2025-05-13 13:55:18,350 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current done
2025-05-13 13:55:18,493 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00010_nis_uncal.fits>,).
2025-05-13 13:55:18,540 - stpipe.Detector1Pipeline.charge_migration - INFO - Using signal_threshold: 21864.00
2025-05-13 13:55:19,084 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration done
2025-05-13 13:55:19,222 - stpipe.Detector1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00010_nis_uncal.fits>,).
2025-05-13 13:55:19,229 - stpipe.Detector1Pipeline.jump - INFO - CR rejection threshold = 8 sigma
2025-05-13 13:55:19,230 - stpipe.Detector1Pipeline.jump - INFO - Maximum cores to use = half
2025-05-13 13:55:19,286 - stpipe.Detector1Pipeline.jump - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:55:19,294 - stpipe.Detector1Pipeline.jump - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:55:19,454 - stpipe.Detector1Pipeline.jump - INFO - Executing two-point difference method
2025-05-13 13:55:19,455 - stpipe.Detector1Pipeline.jump - INFO - Creating 2 processes for jump detection
2025-05-13 13:55:23,081 - stpipe.Detector1Pipeline.jump - INFO - Flagging Snowballs
2025-05-13 13:55:23,278 - stpipe.Detector1Pipeline.jump - INFO - Total snowballs = 44
2025-05-13 13:55:23,279 - stpipe.Detector1Pipeline.jump - INFO - Total elapsed time = 3.82473 sec
2025-05-13 13:55:23,349 - stpipe.Detector1Pipeline.jump - INFO - The execution time in seconds: 4.119610
2025-05-13 13:55:23,353 - stpipe.Detector1Pipeline.jump - INFO - Step jump done
2025-05-13 13:55:23,489 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step clean_flicker_noise running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00010_nis_uncal.fits>,).
2025-05-13 13:55:23,490 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step skipped.
2025-05-13 13:55:23,611 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00010_nis_uncal.fits>,).
2025-05-13 13:55:23,673 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:55:23,674 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:55:23,697 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using algorithm = OLS_C
2025-05-13 13:55:23,698 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using weighting = optimal
2025-05-13 13:55:24,270 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of multiprocessing slices: 1
2025-05-13 13:55:29,961 - stpipe.Detector1Pipeline.ramp_fit - INFO - Ramp Fitting C Time: 5.687014579772949
2025-05-13 13:55:30,004 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit done
2025-05-13 13:55:30,144 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(2048, 2048) from jw01475006001_02201_00010_nis_uncal.fits>,).
2025-05-13 13:55:30,168 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:55:30,169 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:55:30,171 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:55:30,296 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 2048, 2048) from jw01475006001_02201_00010_nis_uncal.fits>,).
2025-05-13 13:55:30,321 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:55:30,322 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:55:30,324 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:55:30,430 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00010_nis_rateints.fits
2025-05-13 13:55:30,430 - stpipe.Detector1Pipeline - INFO - ... ending calwebb_detector1
2025-05-13 13:55:30,432 - stpipe.Detector1Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:55:30,536 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00010_nis_rate.fits
2025-05-13 13:55:30,537 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline done
2025-05-13 13:55:30,538 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:55:30,646 - CRDS - ERROR - Error determining best reference for 'pars-darkcurrentstep' = No match found.
2025-05-13 13:55:30,649 - stpipe - INFO - PARS-CHARGEMIGRATIONSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-chargemigrationstep_0018.asdf
2025-05-13 13:55:30,658 - stpipe - INFO - PARS-JUMPSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-jumpstep_0087.asdf
2025-05-13 13:55:30,667 - stpipe - INFO - PARS-DETECTOR1PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-detector1pipeline_0001.asdf
2025-05-13 13:55:30,683 - stpipe.Detector1Pipeline - INFO - Detector1Pipeline instance created.
2025-05-13 13:55:30,684 - stpipe.Detector1Pipeline.group_scale - INFO - GroupScaleStep instance created.
2025-05-13 13:55:30,685 - stpipe.Detector1Pipeline.dq_init - INFO - DQInitStep instance created.
2025-05-13 13:55:30,686 - stpipe.Detector1Pipeline.emicorr - INFO - EmiCorrStep instance created.
2025-05-13 13:55:30,687 - stpipe.Detector1Pipeline.saturation - INFO - SaturationStep instance created.
2025-05-13 13:55:30,688 - stpipe.Detector1Pipeline.ipc - INFO - IPCStep instance created.
2025-05-13 13:55:30,689 - stpipe.Detector1Pipeline.superbias - INFO - SuperBiasStep instance created.
2025-05-13 13:55:30,690 - stpipe.Detector1Pipeline.refpix - INFO - RefPixStep instance created.
2025-05-13 13:55:30,690 - stpipe.Detector1Pipeline.rscd - INFO - RscdStep instance created.
2025-05-13 13:55:30,691 - stpipe.Detector1Pipeline.firstframe - INFO - FirstFrameStep instance created.
2025-05-13 13:55:30,692 - stpipe.Detector1Pipeline.lastframe - INFO - LastFrameStep instance created.
2025-05-13 13:55:30,693 - stpipe.Detector1Pipeline.linearity - INFO - LinearityStep instance created.
2025-05-13 13:55:30,694 - stpipe.Detector1Pipeline.dark_current - INFO - DarkCurrentStep instance created.
2025-05-13 13:55:30,694 - stpipe.Detector1Pipeline.reset - INFO - ResetStep instance created.
2025-05-13 13:55:30,695 - stpipe.Detector1Pipeline.persistence - INFO - PersistenceStep instance created.
2025-05-13 13:55:30,696 - stpipe.Detector1Pipeline.charge_migration - INFO - ChargeMigrationStep instance created.
2025-05-13 13:55:30,698 - stpipe.Detector1Pipeline.jump - INFO - JumpStep instance created.
2025-05-13 13:55:30,699 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - CleanFlickerNoiseStep instance created.
2025-05-13 13:55:30,700 - stpipe.Detector1Pipeline.ramp_fit - INFO - RampFitStep instance created.
2025-05-13 13:55:30,701 - stpipe.Detector1Pipeline.gain_scale - INFO - GainScaleStep instance created.
2025-05-13 13:55:30,837 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline running with args ('./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00011_nis_uncal.fits',).
2025-05-13 13:55:30,859 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage1
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_calibrated_ramp: False
steps:
group_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dq_init:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
emicorr:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
algorithm: sequential
nints_to_phase: None
nbins: None
scale_reference: True
onthefly_corr_freq: None
use_n_cycles: 3
fit_ints_separately: False
user_supplied_reffile: None
save_intermediate_results: False
saturation:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
n_pix_grow_sat: 1
use_readpatt: True
ipc:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
superbias:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
refpix:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
odd_even_columns: True
use_side_ref_pixels: True
side_smoothing_length: 11
side_gain: 1.0
odd_even_rows: True
ovr_corr_mitigation_ftr: 3.0
preserve_irs2_refpix: False
irs2_mean_subtraction: False
refpix_algorithm: median
sigreject: 4.0
gaussmooth: 1.0
halfwidth: 30
rscd:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
type: baseline
firstframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
bright_use_group1: False
lastframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
linearity:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_current:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_output: None
average_dark_current: None
reset:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
persistence:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
input_trapsfilled: ''
flag_pers_cutoff: 40.0
save_persistence: False
save_trapsfilled: True
modify_input: False
charge_migration:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
signal_threshold: 21864.0
jump:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
rejection_threshold: 8.0
three_group_rejection_threshold: 6.0
four_group_rejection_threshold: 5.0
maximum_cores: half
flag_4_neighbors: False
max_jump_to_flag_neighbors: 200.0
min_jump_to_flag_neighbors: 10.0
after_jump_flag_dn1: 1000
after_jump_flag_time1: 90
after_jump_flag_dn2: 0
after_jump_flag_time2: 0
expand_large_events: True
min_sat_area: 5
min_jump_area: 15.0
expand_factor: 1.75
use_ellipses: False
sat_required_snowball: True
min_sat_radius_extend: 5.0
sat_expand: 0
edge_size: 20
mask_snowball_core_next_int: True
snowball_time_masked_next_int: 4000
find_showers: False
max_shower_amplitude: 4.0
extend_snr_threshold: 1.2
extend_min_area: 90
extend_inner_radius: 1.0
extend_outer_radius: 2.6
extend_ellipse_expand_ratio: 1.1
time_masked_after_shower: 15.0
min_diffs_single_pass: 10
max_extended_radius: 100
minimum_groups: 3
minimum_sigclip_groups: 100
only_use_ints: True
clean_flicker_noise:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
fit_method: median
fit_by_channel: False
background_method: median
background_box_size: None
mask_science_regions: False
apply_flat_field: False
n_sigma: 2.0
fit_histogram: False
single_mask: True
user_mask: None
save_mask: False
save_background: False
save_noise: False
ramp_fit:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
algorithm: OLS_C
int_name: ''
save_opt: False
opt_name: ''
suppress_one_group: True
firstgroup: None
lastgroup: None
maximum_cores: '1'
gain_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
2025-05-13 13:55:30,960 - stpipe.Detector1Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00011_nis_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'sirskernel', 'superbias']
2025-05-13 13:55:30,963 - stpipe.Detector1Pipeline - INFO - Prefetch for DARK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits'.
2025-05-13 13:55:30,964 - stpipe.Detector1Pipeline - INFO - Prefetch for GAIN reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits'.
2025-05-13 13:55:30,964 - stpipe.Detector1Pipeline - INFO - Prefetch for LINEARITY reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits'.
2025-05-13 13:55:30,965 - stpipe.Detector1Pipeline - INFO - Prefetch for MASK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits'.
2025-05-13 13:55:30,965 - stpipe.Detector1Pipeline - INFO - Prefetch for READNOISE reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits'.
2025-05-13 13:55:30,966 - stpipe.Detector1Pipeline - INFO - Prefetch for REFPIX reference file is 'N/A'.
2025-05-13 13:55:30,966 - stpipe.Detector1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'.
2025-05-13 13:55:30,967 - stpipe.Detector1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'.
2025-05-13 13:55:30,967 - stpipe.Detector1Pipeline - INFO - Prefetch for SATURATION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits'.
2025-05-13 13:55:30,968 - stpipe.Detector1Pipeline - INFO - Prefetch for SIRSKERNEL reference file is 'N/A'.
2025-05-13 13:55:30,968 - stpipe.Detector1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits'.
2025-05-13 13:55:30,969 - stpipe.Detector1Pipeline - INFO - Starting calwebb_detector1 ...
2025-05-13 13:55:31,267 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00011_nis_uncal.fits>,).
2025-05-13 13:55:31,274 - stpipe.Detector1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed
2025-05-13 13:55:31,275 - stpipe.Detector1Pipeline.group_scale - INFO - Step will be skipped
2025-05-13 13:55:31,276 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale done
2025-05-13 13:55:31,398 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00011_nis_uncal.fits>,).
2025-05-13 13:55:31,414 - stpipe.Detector1Pipeline.dq_init - INFO - Using MASK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits
2025-05-13 13:55:31,598 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init done
2025-05-13 13:55:31,739 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00011_nis_uncal.fits>,).
2025-05-13 13:55:31,754 - stpipe.Detector1Pipeline.saturation - INFO - Using SATURATION reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits
2025-05-13 13:55:31,779 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:55:31,779 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:55:31,783 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:55:31,824 - stpipe.Detector1Pipeline.saturation - INFO - Using read_pattern with nframes 4
2025-05-13 13:55:32,624 - stpipe.Detector1Pipeline.saturation - INFO - Detected 4341 saturated pixels
2025-05-13 13:55:32,649 - stpipe.Detector1Pipeline.saturation - INFO - Detected 1 A/D floor pixels
2025-05-13 13:55:32,654 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation done
2025-05-13 13:55:32,796 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00011_nis_uncal.fits>,).
2025-05-13 13:55:32,797 - stpipe.Detector1Pipeline.ipc - INFO - Step skipped.
2025-05-13 13:55:32,945 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00011_nis_uncal.fits>,).
2025-05-13 13:55:32,963 - stpipe.Detector1Pipeline.superbias - INFO - Using SUPERBIAS reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits
2025-05-13 13:55:33,217 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias done
2025-05-13 13:55:33,355 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00011_nis_uncal.fits>,).
2025-05-13 13:55:33,401 - stpipe.Detector1Pipeline.refpix - INFO - NIR full frame data
2025-05-13 13:55:33,402 - stpipe.Detector1Pipeline.refpix - INFO - The following parameters are valid for this mode:
2025-05-13 13:55:33,402 - stpipe.Detector1Pipeline.refpix - INFO - use_side_ref_pixels = True
2025-05-13 13:55:33,403 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_columns = True
2025-05-13 13:55:33,403 - stpipe.Detector1Pipeline.refpix - INFO - side_smoothing_length = 11
2025-05-13 13:55:33,404 - stpipe.Detector1Pipeline.refpix - INFO - side_gain = 1.0
2025-05-13 13:55:33,404 - stpipe.Detector1Pipeline.refpix - INFO - The following parameter is not applicable and is ignored:
2025-05-13 13:55:33,405 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_rows = False
2025-05-13 13:55:37,321 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix done
2025-05-13 13:55:37,465 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00011_nis_uncal.fits>,).
2025-05-13 13:55:37,480 - stpipe.Detector1Pipeline.linearity - INFO - Using Linearity reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits
2025-05-13 13:55:37,515 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:55:37,516 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:55:37,520 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:55:38,179 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity done
2025-05-13 13:55:38,316 - stpipe.Detector1Pipeline.persistence - INFO - Step persistence running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00011_nis_uncal.fits>,).
2025-05-13 13:55:38,317 - stpipe.Detector1Pipeline.persistence - INFO - Step skipped.
2025-05-13 13:55:38,442 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00011_nis_uncal.fits>,).
2025-05-13 13:55:38,457 - stpipe.Detector1Pipeline.dark_current - INFO - Using DARK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits
2025-05-13 13:55:38,657 - stpipe.Detector1Pipeline.dark_current - INFO - Science data nints=1, ngroups=16, nframes=4, groupgap=0
2025-05-13 13:55:38,658 - stpipe.Detector1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=30, nframes=4, groupgap=0
2025-05-13 13:55:38,858 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current done
2025-05-13 13:55:39,002 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00011_nis_uncal.fits>,).
2025-05-13 13:55:39,053 - stpipe.Detector1Pipeline.charge_migration - INFO - Using signal_threshold: 21864.00
2025-05-13 13:55:39,574 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration done
2025-05-13 13:55:39,712 - stpipe.Detector1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00011_nis_uncal.fits>,).
2025-05-13 13:55:39,720 - stpipe.Detector1Pipeline.jump - INFO - CR rejection threshold = 8 sigma
2025-05-13 13:55:39,720 - stpipe.Detector1Pipeline.jump - INFO - Maximum cores to use = half
2025-05-13 13:55:39,777 - stpipe.Detector1Pipeline.jump - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:55:39,785 - stpipe.Detector1Pipeline.jump - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:55:39,945 - stpipe.Detector1Pipeline.jump - INFO - Executing two-point difference method
2025-05-13 13:55:39,946 - stpipe.Detector1Pipeline.jump - INFO - Creating 2 processes for jump detection
2025-05-13 13:55:43,694 - stpipe.Detector1Pipeline.jump - INFO - Flagging Snowballs
2025-05-13 13:55:43,890 - stpipe.Detector1Pipeline.jump - INFO - Total snowballs = 46
2025-05-13 13:55:43,890 - stpipe.Detector1Pipeline.jump - INFO - Total elapsed time = 3.9443 sec
2025-05-13 13:55:43,960 - stpipe.Detector1Pipeline.jump - INFO - The execution time in seconds: 4.240164
2025-05-13 13:55:43,964 - stpipe.Detector1Pipeline.jump - INFO - Step jump done
2025-05-13 13:55:44,113 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step clean_flicker_noise running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00011_nis_uncal.fits>,).
2025-05-13 13:55:44,113 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step skipped.
2025-05-13 13:55:44,247 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00011_nis_uncal.fits>,).
2025-05-13 13:55:44,309 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:55:44,310 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:55:44,334 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using algorithm = OLS_C
2025-05-13 13:55:44,335 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using weighting = optimal
2025-05-13 13:55:44,925 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of multiprocessing slices: 1
2025-05-13 13:55:50,423 - stpipe.Detector1Pipeline.ramp_fit - INFO - Ramp Fitting C Time: 5.4937522411346436
2025-05-13 13:55:50,466 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit done
2025-05-13 13:55:50,609 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(2048, 2048) from jw01475006001_02201_00011_nis_uncal.fits>,).
2025-05-13 13:55:50,633 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:55:50,634 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:55:50,636 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:55:50,764 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 2048, 2048) from jw01475006001_02201_00011_nis_uncal.fits>,).
2025-05-13 13:55:50,789 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:55:50,790 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:55:50,792 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:55:50,898 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00011_nis_rateints.fits
2025-05-13 13:55:50,898 - stpipe.Detector1Pipeline - INFO - ... ending calwebb_detector1
2025-05-13 13:55:50,900 - stpipe.Detector1Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:55:51,006 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00011_nis_rate.fits
2025-05-13 13:55:51,007 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline done
2025-05-13 13:55:51,007 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:55:51,131 - CRDS - ERROR - Error determining best reference for 'pars-darkcurrentstep' = No match found.
2025-05-13 13:55:51,134 - stpipe - INFO - PARS-CHARGEMIGRATIONSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-chargemigrationstep_0018.asdf
2025-05-13 13:55:51,142 - stpipe - INFO - PARS-JUMPSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-jumpstep_0087.asdf
2025-05-13 13:55:51,152 - stpipe - INFO - PARS-DETECTOR1PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-detector1pipeline_0001.asdf
2025-05-13 13:55:51,168 - stpipe.Detector1Pipeline - INFO - Detector1Pipeline instance created.
2025-05-13 13:55:51,169 - stpipe.Detector1Pipeline.group_scale - INFO - GroupScaleStep instance created.
2025-05-13 13:55:51,170 - stpipe.Detector1Pipeline.dq_init - INFO - DQInitStep instance created.
2025-05-13 13:55:51,171 - stpipe.Detector1Pipeline.emicorr - INFO - EmiCorrStep instance created.
2025-05-13 13:55:51,172 - stpipe.Detector1Pipeline.saturation - INFO - SaturationStep instance created.
2025-05-13 13:55:51,173 - stpipe.Detector1Pipeline.ipc - INFO - IPCStep instance created.
2025-05-13 13:55:51,174 - stpipe.Detector1Pipeline.superbias - INFO - SuperBiasStep instance created.
2025-05-13 13:55:51,175 - stpipe.Detector1Pipeline.refpix - INFO - RefPixStep instance created.
2025-05-13 13:55:51,176 - stpipe.Detector1Pipeline.rscd - INFO - RscdStep instance created.
2025-05-13 13:55:51,177 - stpipe.Detector1Pipeline.firstframe - INFO - FirstFrameStep instance created.
2025-05-13 13:55:51,178 - stpipe.Detector1Pipeline.lastframe - INFO - LastFrameStep instance created.
2025-05-13 13:55:51,179 - stpipe.Detector1Pipeline.linearity - INFO - LinearityStep instance created.
2025-05-13 13:55:51,180 - stpipe.Detector1Pipeline.dark_current - INFO - DarkCurrentStep instance created.
2025-05-13 13:55:51,180 - stpipe.Detector1Pipeline.reset - INFO - ResetStep instance created.
2025-05-13 13:55:51,182 - stpipe.Detector1Pipeline.persistence - INFO - PersistenceStep instance created.
2025-05-13 13:55:51,184 - stpipe.Detector1Pipeline.charge_migration - INFO - ChargeMigrationStep instance created.
2025-05-13 13:55:51,186 - stpipe.Detector1Pipeline.jump - INFO - JumpStep instance created.
2025-05-13 13:55:51,187 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - CleanFlickerNoiseStep instance created.
2025-05-13 13:55:51,188 - stpipe.Detector1Pipeline.ramp_fit - INFO - RampFitStep instance created.
2025-05-13 13:55:51,189 - stpipe.Detector1Pipeline.gain_scale - INFO - GainScaleStep instance created.
2025-05-13 13:55:51,328 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline running with args ('./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00012_nis_uncal.fits',).
2025-05-13 13:55:51,349 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage1
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_calibrated_ramp: False
steps:
group_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dq_init:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
emicorr:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
algorithm: sequential
nints_to_phase: None
nbins: None
scale_reference: True
onthefly_corr_freq: None
use_n_cycles: 3
fit_ints_separately: False
user_supplied_reffile: None
save_intermediate_results: False
saturation:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
n_pix_grow_sat: 1
use_readpatt: True
ipc:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
superbias:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
refpix:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
odd_even_columns: True
use_side_ref_pixels: True
side_smoothing_length: 11
side_gain: 1.0
odd_even_rows: True
ovr_corr_mitigation_ftr: 3.0
preserve_irs2_refpix: False
irs2_mean_subtraction: False
refpix_algorithm: median
sigreject: 4.0
gaussmooth: 1.0
halfwidth: 30
rscd:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
type: baseline
firstframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
bright_use_group1: False
lastframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
linearity:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_current:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_output: None
average_dark_current: None
reset:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
persistence:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
input_trapsfilled: ''
flag_pers_cutoff: 40.0
save_persistence: False
save_trapsfilled: True
modify_input: False
charge_migration:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
signal_threshold: 21864.0
jump:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
rejection_threshold: 8.0
three_group_rejection_threshold: 6.0
four_group_rejection_threshold: 5.0
maximum_cores: half
flag_4_neighbors: False
max_jump_to_flag_neighbors: 200.0
min_jump_to_flag_neighbors: 10.0
after_jump_flag_dn1: 1000
after_jump_flag_time1: 90
after_jump_flag_dn2: 0
after_jump_flag_time2: 0
expand_large_events: True
min_sat_area: 5
min_jump_area: 15.0
expand_factor: 1.75
use_ellipses: False
sat_required_snowball: True
min_sat_radius_extend: 5.0
sat_expand: 0
edge_size: 20
mask_snowball_core_next_int: True
snowball_time_masked_next_int: 4000
find_showers: False
max_shower_amplitude: 4.0
extend_snr_threshold: 1.2
extend_min_area: 90
extend_inner_radius: 1.0
extend_outer_radius: 2.6
extend_ellipse_expand_ratio: 1.1
time_masked_after_shower: 15.0
min_diffs_single_pass: 10
max_extended_radius: 100
minimum_groups: 3
minimum_sigclip_groups: 100
only_use_ints: True
clean_flicker_noise:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
fit_method: median
fit_by_channel: False
background_method: median
background_box_size: None
mask_science_regions: False
apply_flat_field: False
n_sigma: 2.0
fit_histogram: False
single_mask: True
user_mask: None
save_mask: False
save_background: False
save_noise: False
ramp_fit:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
algorithm: OLS_C
int_name: ''
save_opt: False
opt_name: ''
suppress_one_group: True
firstgroup: None
lastgroup: None
maximum_cores: '1'
gain_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
2025-05-13 13:55:51,449 - stpipe.Detector1Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00012_nis_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'sirskernel', 'superbias']
2025-05-13 13:55:51,452 - stpipe.Detector1Pipeline - INFO - Prefetch for DARK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits'.
2025-05-13 13:55:51,453 - stpipe.Detector1Pipeline - INFO - Prefetch for GAIN reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits'.
2025-05-13 13:55:51,453 - stpipe.Detector1Pipeline - INFO - Prefetch for LINEARITY reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits'.
2025-05-13 13:55:51,454 - stpipe.Detector1Pipeline - INFO - Prefetch for MASK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits'.
2025-05-13 13:55:51,454 - stpipe.Detector1Pipeline - INFO - Prefetch for READNOISE reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits'.
2025-05-13 13:55:51,455 - stpipe.Detector1Pipeline - INFO - Prefetch for REFPIX reference file is 'N/A'.
2025-05-13 13:55:51,455 - stpipe.Detector1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'.
2025-05-13 13:55:51,456 - stpipe.Detector1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'.
2025-05-13 13:55:51,456 - stpipe.Detector1Pipeline - INFO - Prefetch for SATURATION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits'.
2025-05-13 13:55:51,456 - stpipe.Detector1Pipeline - INFO - Prefetch for SIRSKERNEL reference file is 'N/A'.
2025-05-13 13:55:51,457 - stpipe.Detector1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits'.
2025-05-13 13:55:51,458 - stpipe.Detector1Pipeline - INFO - Starting calwebb_detector1 ...
2025-05-13 13:55:51,791 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00012_nis_uncal.fits>,).
2025-05-13 13:55:51,799 - stpipe.Detector1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed
2025-05-13 13:55:51,799 - stpipe.Detector1Pipeline.group_scale - INFO - Step will be skipped
2025-05-13 13:55:51,801 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale done
2025-05-13 13:55:51,925 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00012_nis_uncal.fits>,).
2025-05-13 13:55:51,940 - stpipe.Detector1Pipeline.dq_init - INFO - Using MASK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits
2025-05-13 13:55:52,110 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init done
2025-05-13 13:55:52,254 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00012_nis_uncal.fits>,).
2025-05-13 13:55:52,269 - stpipe.Detector1Pipeline.saturation - INFO - Using SATURATION reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits
2025-05-13 13:55:52,294 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:55:52,295 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:55:52,298 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:55:52,361 - stpipe.Detector1Pipeline.saturation - INFO - Using read_pattern with nframes 4
2025-05-13 13:55:53,160 - stpipe.Detector1Pipeline.saturation - INFO - Detected 4024 saturated pixels
2025-05-13 13:55:53,185 - stpipe.Detector1Pipeline.saturation - INFO - Detected 1 A/D floor pixels
2025-05-13 13:55:53,191 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation done
2025-05-13 13:55:53,328 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00012_nis_uncal.fits>,).
2025-05-13 13:55:53,329 - stpipe.Detector1Pipeline.ipc - INFO - Step skipped.
2025-05-13 13:55:53,451 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00012_nis_uncal.fits>,).
2025-05-13 13:55:53,466 - stpipe.Detector1Pipeline.superbias - INFO - Using SUPERBIAS reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits
2025-05-13 13:55:53,696 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias done
2025-05-13 13:55:53,837 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00012_nis_uncal.fits>,).
2025-05-13 13:55:53,884 - stpipe.Detector1Pipeline.refpix - INFO - NIR full frame data
2025-05-13 13:55:53,885 - stpipe.Detector1Pipeline.refpix - INFO - The following parameters are valid for this mode:
2025-05-13 13:55:53,885 - stpipe.Detector1Pipeline.refpix - INFO - use_side_ref_pixels = True
2025-05-13 13:55:53,886 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_columns = True
2025-05-13 13:55:53,886 - stpipe.Detector1Pipeline.refpix - INFO - side_smoothing_length = 11
2025-05-13 13:55:53,886 - stpipe.Detector1Pipeline.refpix - INFO - side_gain = 1.0
2025-05-13 13:55:53,887 - stpipe.Detector1Pipeline.refpix - INFO - The following parameter is not applicable and is ignored:
2025-05-13 13:55:53,887 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_rows = False
2025-05-13 13:55:57,822 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix done
2025-05-13 13:55:57,961 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00012_nis_uncal.fits>,).
2025-05-13 13:55:57,976 - stpipe.Detector1Pipeline.linearity - INFO - Using Linearity reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits
2025-05-13 13:55:58,011 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:55:58,012 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:55:58,016 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:55:58,683 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity done
2025-05-13 13:55:58,822 - stpipe.Detector1Pipeline.persistence - INFO - Step persistence running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00012_nis_uncal.fits>,).
2025-05-13 13:55:58,822 - stpipe.Detector1Pipeline.persistence - INFO - Step skipped.
2025-05-13 13:55:58,946 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00012_nis_uncal.fits>,).
2025-05-13 13:55:58,961 - stpipe.Detector1Pipeline.dark_current - INFO - Using DARK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits
2025-05-13 13:55:59,166 - stpipe.Detector1Pipeline.dark_current - INFO - Science data nints=1, ngroups=16, nframes=4, groupgap=0
2025-05-13 13:55:59,167 - stpipe.Detector1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=30, nframes=4, groupgap=0
2025-05-13 13:55:59,379 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current done
2025-05-13 13:55:59,523 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00012_nis_uncal.fits>,).
2025-05-13 13:55:59,570 - stpipe.Detector1Pipeline.charge_migration - INFO - Using signal_threshold: 21864.00
2025-05-13 13:56:00,071 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration done
2025-05-13 13:56:00,214 - stpipe.Detector1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00012_nis_uncal.fits>,).
2025-05-13 13:56:00,222 - stpipe.Detector1Pipeline.jump - INFO - CR rejection threshold = 8 sigma
2025-05-13 13:56:00,222 - stpipe.Detector1Pipeline.jump - INFO - Maximum cores to use = half
2025-05-13 13:56:00,285 - stpipe.Detector1Pipeline.jump - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:56:00,293 - stpipe.Detector1Pipeline.jump - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:56:00,452 - stpipe.Detector1Pipeline.jump - INFO - Executing two-point difference method
2025-05-13 13:56:00,453 - stpipe.Detector1Pipeline.jump - INFO - Creating 2 processes for jump detection
2025-05-13 13:56:04,111 - stpipe.Detector1Pipeline.jump - INFO - Flagging Snowballs
2025-05-13 13:56:04,306 - stpipe.Detector1Pipeline.jump - INFO - Total snowballs = 37
2025-05-13 13:56:04,307 - stpipe.Detector1Pipeline.jump - INFO - Total elapsed time = 3.85396 sec
2025-05-13 13:56:04,383 - stpipe.Detector1Pipeline.jump - INFO - The execution time in seconds: 4.160911
2025-05-13 13:56:04,386 - stpipe.Detector1Pipeline.jump - INFO - Step jump done
2025-05-13 13:56:04,522 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step clean_flicker_noise running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00012_nis_uncal.fits>,).
2025-05-13 13:56:04,523 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step skipped.
2025-05-13 13:56:04,658 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00012_nis_uncal.fits>,).
2025-05-13 13:56:04,714 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:56:04,715 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:56:04,740 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using algorithm = OLS_C
2025-05-13 13:56:04,741 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using weighting = optimal
2025-05-13 13:56:05,302 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of multiprocessing slices: 1
2025-05-13 13:56:10,801 - stpipe.Detector1Pipeline.ramp_fit - INFO - Ramp Fitting C Time: 5.494213342666626
2025-05-13 13:56:10,845 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit done
2025-05-13 13:56:10,997 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(2048, 2048) from jw01475006001_02201_00012_nis_uncal.fits>,).
2025-05-13 13:56:11,021 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:56:11,022 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:56:11,024 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:56:11,181 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 2048, 2048) from jw01475006001_02201_00012_nis_uncal.fits>,).
2025-05-13 13:56:11,211 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:56:11,211 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:56:11,213 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:56:11,323 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00012_nis_rateints.fits
2025-05-13 13:56:11,324 - stpipe.Detector1Pipeline - INFO - ... ending calwebb_detector1
2025-05-13 13:56:11,326 - stpipe.Detector1Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:56:11,434 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00012_nis_rate.fits
2025-05-13 13:56:11,434 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline done
2025-05-13 13:56:11,435 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:56:11,546 - CRDS - ERROR - Error determining best reference for 'pars-darkcurrentstep' = No match found.
2025-05-13 13:56:11,549 - stpipe - INFO - PARS-CHARGEMIGRATIONSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-chargemigrationstep_0018.asdf
2025-05-13 13:56:11,558 - stpipe - INFO - PARS-JUMPSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-jumpstep_0087.asdf
2025-05-13 13:56:11,568 - stpipe - INFO - PARS-DETECTOR1PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-detector1pipeline_0001.asdf
2025-05-13 13:56:11,585 - stpipe.Detector1Pipeline - INFO - Detector1Pipeline instance created.
2025-05-13 13:56:11,586 - stpipe.Detector1Pipeline.group_scale - INFO - GroupScaleStep instance created.
2025-05-13 13:56:11,587 - stpipe.Detector1Pipeline.dq_init - INFO - DQInitStep instance created.
2025-05-13 13:56:11,588 - stpipe.Detector1Pipeline.emicorr - INFO - EmiCorrStep instance created.
2025-05-13 13:56:11,589 - stpipe.Detector1Pipeline.saturation - INFO - SaturationStep instance created.
2025-05-13 13:56:11,589 - stpipe.Detector1Pipeline.ipc - INFO - IPCStep instance created.
2025-05-13 13:56:11,590 - stpipe.Detector1Pipeline.superbias - INFO - SuperBiasStep instance created.
2025-05-13 13:56:11,591 - stpipe.Detector1Pipeline.refpix - INFO - RefPixStep instance created.
2025-05-13 13:56:11,592 - stpipe.Detector1Pipeline.rscd - INFO - RscdStep instance created.
2025-05-13 13:56:11,593 - stpipe.Detector1Pipeline.firstframe - INFO - FirstFrameStep instance created.
2025-05-13 13:56:11,594 - stpipe.Detector1Pipeline.lastframe - INFO - LastFrameStep instance created.
2025-05-13 13:56:11,595 - stpipe.Detector1Pipeline.linearity - INFO - LinearityStep instance created.
2025-05-13 13:56:11,596 - stpipe.Detector1Pipeline.dark_current - INFO - DarkCurrentStep instance created.
2025-05-13 13:56:11,596 - stpipe.Detector1Pipeline.reset - INFO - ResetStep instance created.
2025-05-13 13:56:11,597 - stpipe.Detector1Pipeline.persistence - INFO - PersistenceStep instance created.
2025-05-13 13:56:11,598 - stpipe.Detector1Pipeline.charge_migration - INFO - ChargeMigrationStep instance created.
2025-05-13 13:56:11,600 - stpipe.Detector1Pipeline.jump - INFO - JumpStep instance created.
2025-05-13 13:56:11,601 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - CleanFlickerNoiseStep instance created.
2025-05-13 13:56:11,604 - stpipe.Detector1Pipeline.ramp_fit - INFO - RampFitStep instance created.
2025-05-13 13:56:11,605 - stpipe.Detector1Pipeline.gain_scale - INFO - GainScaleStep instance created.
2025-05-13 13:56:11,743 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline running with args ('./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00013_nis_uncal.fits',).
2025-05-13 13:56:11,764 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage1
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_calibrated_ramp: False
steps:
group_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dq_init:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
emicorr:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
algorithm: sequential
nints_to_phase: None
nbins: None
scale_reference: True
onthefly_corr_freq: None
use_n_cycles: 3
fit_ints_separately: False
user_supplied_reffile: None
save_intermediate_results: False
saturation:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
n_pix_grow_sat: 1
use_readpatt: True
ipc:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
superbias:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
refpix:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
odd_even_columns: True
use_side_ref_pixels: True
side_smoothing_length: 11
side_gain: 1.0
odd_even_rows: True
ovr_corr_mitigation_ftr: 3.0
preserve_irs2_refpix: False
irs2_mean_subtraction: False
refpix_algorithm: median
sigreject: 4.0
gaussmooth: 1.0
halfwidth: 30
rscd:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
type: baseline
firstframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
bright_use_group1: False
lastframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
linearity:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_current:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_output: None
average_dark_current: None
reset:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
persistence:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
input_trapsfilled: ''
flag_pers_cutoff: 40.0
save_persistence: False
save_trapsfilled: True
modify_input: False
charge_migration:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
signal_threshold: 21864.0
jump:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
rejection_threshold: 8.0
three_group_rejection_threshold: 6.0
four_group_rejection_threshold: 5.0
maximum_cores: half
flag_4_neighbors: False
max_jump_to_flag_neighbors: 200.0
min_jump_to_flag_neighbors: 10.0
after_jump_flag_dn1: 1000
after_jump_flag_time1: 90
after_jump_flag_dn2: 0
after_jump_flag_time2: 0
expand_large_events: True
min_sat_area: 5
min_jump_area: 15.0
expand_factor: 1.75
use_ellipses: False
sat_required_snowball: True
min_sat_radius_extend: 5.0
sat_expand: 0
edge_size: 20
mask_snowball_core_next_int: True
snowball_time_masked_next_int: 4000
find_showers: False
max_shower_amplitude: 4.0
extend_snr_threshold: 1.2
extend_min_area: 90
extend_inner_radius: 1.0
extend_outer_radius: 2.6
extend_ellipse_expand_ratio: 1.1
time_masked_after_shower: 15.0
min_diffs_single_pass: 10
max_extended_radius: 100
minimum_groups: 3
minimum_sigclip_groups: 100
only_use_ints: True
clean_flicker_noise:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
fit_method: median
fit_by_channel: False
background_method: median
background_box_size: None
mask_science_regions: False
apply_flat_field: False
n_sigma: 2.0
fit_histogram: False
single_mask: True
user_mask: None
save_mask: False
save_background: False
save_noise: False
ramp_fit:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
algorithm: OLS_C
int_name: ''
save_opt: False
opt_name: ''
suppress_one_group: True
firstgroup: None
lastgroup: None
maximum_cores: '1'
gain_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
2025-05-13 13:56:11,876 - stpipe.Detector1Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00013_nis_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'sirskernel', 'superbias']
2025-05-13 13:56:11,879 - stpipe.Detector1Pipeline - INFO - Prefetch for DARK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits'.
2025-05-13 13:56:11,880 - stpipe.Detector1Pipeline - INFO - Prefetch for GAIN reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits'.
2025-05-13 13:56:11,880 - stpipe.Detector1Pipeline - INFO - Prefetch for LINEARITY reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits'.
2025-05-13 13:56:11,881 - stpipe.Detector1Pipeline - INFO - Prefetch for MASK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits'.
2025-05-13 13:56:11,881 - stpipe.Detector1Pipeline - INFO - Prefetch for READNOISE reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits'.
2025-05-13 13:56:11,882 - stpipe.Detector1Pipeline - INFO - Prefetch for REFPIX reference file is 'N/A'.
2025-05-13 13:56:11,882 - stpipe.Detector1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'.
2025-05-13 13:56:11,883 - stpipe.Detector1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'.
2025-05-13 13:56:11,883 - stpipe.Detector1Pipeline - INFO - Prefetch for SATURATION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits'.
2025-05-13 13:56:11,884 - stpipe.Detector1Pipeline - INFO - Prefetch for SIRSKERNEL reference file is 'N/A'.
2025-05-13 13:56:11,884 - stpipe.Detector1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits'.
2025-05-13 13:56:11,885 - stpipe.Detector1Pipeline - INFO - Starting calwebb_detector1 ...
2025-05-13 13:56:12,189 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00013_nis_uncal.fits>,).
2025-05-13 13:56:12,196 - stpipe.Detector1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed
2025-05-13 13:56:12,197 - stpipe.Detector1Pipeline.group_scale - INFO - Step will be skipped
2025-05-13 13:56:12,199 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale done
2025-05-13 13:56:12,326 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00013_nis_uncal.fits>,).
2025-05-13 13:56:12,342 - stpipe.Detector1Pipeline.dq_init - INFO - Using MASK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits
2025-05-13 13:56:12,534 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init done
2025-05-13 13:56:12,678 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00013_nis_uncal.fits>,).
2025-05-13 13:56:12,693 - stpipe.Detector1Pipeline.saturation - INFO - Using SATURATION reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits
2025-05-13 13:56:12,719 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:56:12,720 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:56:12,724 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:56:12,764 - stpipe.Detector1Pipeline.saturation - INFO - Using read_pattern with nframes 4
2025-05-13 13:56:13,567 - stpipe.Detector1Pipeline.saturation - INFO - Detected 4397 saturated pixels
2025-05-13 13:56:13,592 - stpipe.Detector1Pipeline.saturation - INFO - Detected 2 A/D floor pixels
2025-05-13 13:56:13,597 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation done
2025-05-13 13:56:13,740 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00013_nis_uncal.fits>,).
2025-05-13 13:56:13,741 - stpipe.Detector1Pipeline.ipc - INFO - Step skipped.
2025-05-13 13:56:13,865 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00013_nis_uncal.fits>,).
2025-05-13 13:56:13,880 - stpipe.Detector1Pipeline.superbias - INFO - Using SUPERBIAS reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits
2025-05-13 13:56:14,139 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias done
2025-05-13 13:56:14,277 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00013_nis_uncal.fits>,).
2025-05-13 13:56:14,310 - stpipe.Detector1Pipeline.refpix - INFO - NIR full frame data
2025-05-13 13:56:14,311 - stpipe.Detector1Pipeline.refpix - INFO - The following parameters are valid for this mode:
2025-05-13 13:56:14,311 - stpipe.Detector1Pipeline.refpix - INFO - use_side_ref_pixels = True
2025-05-13 13:56:14,312 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_columns = True
2025-05-13 13:56:14,312 - stpipe.Detector1Pipeline.refpix - INFO - side_smoothing_length = 11
2025-05-13 13:56:14,313 - stpipe.Detector1Pipeline.refpix - INFO - side_gain = 1.0
2025-05-13 13:56:14,313 - stpipe.Detector1Pipeline.refpix - INFO - The following parameter is not applicable and is ignored:
2025-05-13 13:56:14,314 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_rows = False
2025-05-13 13:56:18,211 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix done
2025-05-13 13:56:18,369 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00013_nis_uncal.fits>,).
2025-05-13 13:56:18,384 - stpipe.Detector1Pipeline.linearity - INFO - Using Linearity reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits
2025-05-13 13:56:18,419 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:56:18,420 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:56:18,424 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:56:19,080 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity done
2025-05-13 13:56:19,224 - stpipe.Detector1Pipeline.persistence - INFO - Step persistence running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00013_nis_uncal.fits>,).
2025-05-13 13:56:19,224 - stpipe.Detector1Pipeline.persistence - INFO - Step skipped.
2025-05-13 13:56:19,358 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00013_nis_uncal.fits>,).
2025-05-13 13:56:19,374 - stpipe.Detector1Pipeline.dark_current - INFO - Using DARK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits
2025-05-13 13:56:19,579 - stpipe.Detector1Pipeline.dark_current - INFO - Science data nints=1, ngroups=16, nframes=4, groupgap=0
2025-05-13 13:56:19,579 - stpipe.Detector1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=30, nframes=4, groupgap=0
2025-05-13 13:56:19,780 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current done
2025-05-13 13:56:19,926 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00013_nis_uncal.fits>,).
2025-05-13 13:56:19,959 - stpipe.Detector1Pipeline.charge_migration - INFO - Using signal_threshold: 21864.00
2025-05-13 13:56:20,492 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration done
2025-05-13 13:56:20,652 - stpipe.Detector1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00013_nis_uncal.fits>,).
2025-05-13 13:56:20,659 - stpipe.Detector1Pipeline.jump - INFO - CR rejection threshold = 8 sigma
2025-05-13 13:56:20,660 - stpipe.Detector1Pipeline.jump - INFO - Maximum cores to use = half
2025-05-13 13:56:20,731 - stpipe.Detector1Pipeline.jump - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:56:20,739 - stpipe.Detector1Pipeline.jump - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:56:20,901 - stpipe.Detector1Pipeline.jump - INFO - Executing two-point difference method
2025-05-13 13:56:20,902 - stpipe.Detector1Pipeline.jump - INFO - Creating 2 processes for jump detection
2025-05-13 13:56:24,559 - stpipe.Detector1Pipeline.jump - INFO - Flagging Snowballs
2025-05-13 13:56:24,762 - stpipe.Detector1Pipeline.jump - INFO - Total snowballs = 38
2025-05-13 13:56:24,762 - stpipe.Detector1Pipeline.jump - INFO - Total elapsed time = 3.86054 sec
2025-05-13 13:56:24,835 - stpipe.Detector1Pipeline.jump - INFO - The execution time in seconds: 4.175836
2025-05-13 13:56:24,839 - stpipe.Detector1Pipeline.jump - INFO - Step jump done
2025-05-13 13:56:24,983 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step clean_flicker_noise running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00013_nis_uncal.fits>,).
2025-05-13 13:56:24,984 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step skipped.
2025-05-13 13:56:25,112 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00013_nis_uncal.fits>,).
2025-05-13 13:56:25,167 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:56:25,167 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:56:25,192 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using algorithm = OLS_C
2025-05-13 13:56:25,193 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using weighting = optimal
2025-05-13 13:56:25,758 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of multiprocessing slices: 1
2025-05-13 13:56:31,281 - stpipe.Detector1Pipeline.ramp_fit - INFO - Ramp Fitting C Time: 5.518838405609131
2025-05-13 13:56:31,324 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit done
2025-05-13 13:56:31,465 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(2048, 2048) from jw01475006001_02201_00013_nis_uncal.fits>,).
2025-05-13 13:56:31,489 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:56:31,489 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:56:31,491 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:56:31,618 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 2048, 2048) from jw01475006001_02201_00013_nis_uncal.fits>,).
2025-05-13 13:56:31,644 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:56:31,645 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:56:31,647 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:56:31,754 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00013_nis_rateints.fits
2025-05-13 13:56:31,754 - stpipe.Detector1Pipeline - INFO - ... ending calwebb_detector1
2025-05-13 13:56:31,756 - stpipe.Detector1Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:56:31,862 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00013_nis_rate.fits
2025-05-13 13:56:31,863 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline done
2025-05-13 13:56:31,863 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:56:31,972 - CRDS - ERROR - Error determining best reference for 'pars-darkcurrentstep' = No match found.
2025-05-13 13:56:31,975 - stpipe - INFO - PARS-CHARGEMIGRATIONSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-chargemigrationstep_0018.asdf
2025-05-13 13:56:31,983 - stpipe - INFO - PARS-JUMPSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-jumpstep_0087.asdf
2025-05-13 13:56:31,993 - stpipe - INFO - PARS-DETECTOR1PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-detector1pipeline_0001.asdf
2025-05-13 13:56:32,009 - stpipe.Detector1Pipeline - INFO - Detector1Pipeline instance created.
2025-05-13 13:56:32,010 - stpipe.Detector1Pipeline.group_scale - INFO - GroupScaleStep instance created.
2025-05-13 13:56:32,011 - stpipe.Detector1Pipeline.dq_init - INFO - DQInitStep instance created.
2025-05-13 13:56:32,012 - stpipe.Detector1Pipeline.emicorr - INFO - EmiCorrStep instance created.
2025-05-13 13:56:32,013 - stpipe.Detector1Pipeline.saturation - INFO - SaturationStep instance created.
2025-05-13 13:56:32,013 - stpipe.Detector1Pipeline.ipc - INFO - IPCStep instance created.
2025-05-13 13:56:32,014 - stpipe.Detector1Pipeline.superbias - INFO - SuperBiasStep instance created.
2025-05-13 13:56:32,015 - stpipe.Detector1Pipeline.refpix - INFO - RefPixStep instance created.
2025-05-13 13:56:32,016 - stpipe.Detector1Pipeline.rscd - INFO - RscdStep instance created.
2025-05-13 13:56:32,017 - stpipe.Detector1Pipeline.firstframe - INFO - FirstFrameStep instance created.
2025-05-13 13:56:32,018 - stpipe.Detector1Pipeline.lastframe - INFO - LastFrameStep instance created.
2025-05-13 13:56:32,018 - stpipe.Detector1Pipeline.linearity - INFO - LinearityStep instance created.
2025-05-13 13:56:32,019 - stpipe.Detector1Pipeline.dark_current - INFO - DarkCurrentStep instance created.
2025-05-13 13:56:32,020 - stpipe.Detector1Pipeline.reset - INFO - ResetStep instance created.
2025-05-13 13:56:32,022 - stpipe.Detector1Pipeline.persistence - INFO - PersistenceStep instance created.
2025-05-13 13:56:32,022 - stpipe.Detector1Pipeline.charge_migration - INFO - ChargeMigrationStep instance created.
2025-05-13 13:56:32,025 - stpipe.Detector1Pipeline.jump - INFO - JumpStep instance created.
2025-05-13 13:56:32,026 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - CleanFlickerNoiseStep instance created.
2025-05-13 13:56:32,027 - stpipe.Detector1Pipeline.ramp_fit - INFO - RampFitStep instance created.
2025-05-13 13:56:32,028 - stpipe.Detector1Pipeline.gain_scale - INFO - GainScaleStep instance created.
2025-05-13 13:56:32,166 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline running with args ('./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00014_nis_uncal.fits',).
2025-05-13 13:56:32,187 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage1
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_calibrated_ramp: False
steps:
group_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dq_init:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
emicorr:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
algorithm: sequential
nints_to_phase: None
nbins: None
scale_reference: True
onthefly_corr_freq: None
use_n_cycles: 3
fit_ints_separately: False
user_supplied_reffile: None
save_intermediate_results: False
saturation:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
n_pix_grow_sat: 1
use_readpatt: True
ipc:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
superbias:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
refpix:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
odd_even_columns: True
use_side_ref_pixels: True
side_smoothing_length: 11
side_gain: 1.0
odd_even_rows: True
ovr_corr_mitigation_ftr: 3.0
preserve_irs2_refpix: False
irs2_mean_subtraction: False
refpix_algorithm: median
sigreject: 4.0
gaussmooth: 1.0
halfwidth: 30
rscd:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
type: baseline
firstframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
bright_use_group1: False
lastframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
linearity:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_current:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_output: None
average_dark_current: None
reset:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
persistence:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
input_trapsfilled: ''
flag_pers_cutoff: 40.0
save_persistence: False
save_trapsfilled: True
modify_input: False
charge_migration:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
signal_threshold: 21864.0
jump:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
rejection_threshold: 8.0
three_group_rejection_threshold: 6.0
four_group_rejection_threshold: 5.0
maximum_cores: half
flag_4_neighbors: False
max_jump_to_flag_neighbors: 200.0
min_jump_to_flag_neighbors: 10.0
after_jump_flag_dn1: 1000
after_jump_flag_time1: 90
after_jump_flag_dn2: 0
after_jump_flag_time2: 0
expand_large_events: True
min_sat_area: 5
min_jump_area: 15.0
expand_factor: 1.75
use_ellipses: False
sat_required_snowball: True
min_sat_radius_extend: 5.0
sat_expand: 0
edge_size: 20
mask_snowball_core_next_int: True
snowball_time_masked_next_int: 4000
find_showers: False
max_shower_amplitude: 4.0
extend_snr_threshold: 1.2
extend_min_area: 90
extend_inner_radius: 1.0
extend_outer_radius: 2.6
extend_ellipse_expand_ratio: 1.1
time_masked_after_shower: 15.0
min_diffs_single_pass: 10
max_extended_radius: 100
minimum_groups: 3
minimum_sigclip_groups: 100
only_use_ints: True
clean_flicker_noise:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
fit_method: median
fit_by_channel: False
background_method: median
background_box_size: None
mask_science_regions: False
apply_flat_field: False
n_sigma: 2.0
fit_histogram: False
single_mask: True
user_mask: None
save_mask: False
save_background: False
save_noise: False
ramp_fit:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
algorithm: OLS_C
int_name: ''
save_opt: False
opt_name: ''
suppress_one_group: True
firstgroup: None
lastgroup: None
maximum_cores: '1'
gain_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
2025-05-13 13:56:32,289 - stpipe.Detector1Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00014_nis_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'sirskernel', 'superbias']
2025-05-13 13:56:32,292 - stpipe.Detector1Pipeline - INFO - Prefetch for DARK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits'.
2025-05-13 13:56:32,293 - stpipe.Detector1Pipeline - INFO - Prefetch for GAIN reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits'.
2025-05-13 13:56:32,293 - stpipe.Detector1Pipeline - INFO - Prefetch for LINEARITY reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits'.
2025-05-13 13:56:32,294 - stpipe.Detector1Pipeline - INFO - Prefetch for MASK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits'.
2025-05-13 13:56:32,295 - stpipe.Detector1Pipeline - INFO - Prefetch for READNOISE reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits'.
2025-05-13 13:56:32,295 - stpipe.Detector1Pipeline - INFO - Prefetch for REFPIX reference file is 'N/A'.
2025-05-13 13:56:32,296 - stpipe.Detector1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'.
2025-05-13 13:56:32,296 - stpipe.Detector1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'.
2025-05-13 13:56:32,297 - stpipe.Detector1Pipeline - INFO - Prefetch for SATURATION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits'.
2025-05-13 13:56:32,298 - stpipe.Detector1Pipeline - INFO - Prefetch for SIRSKERNEL reference file is 'N/A'.
2025-05-13 13:56:32,298 - stpipe.Detector1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits'.
2025-05-13 13:56:32,299 - stpipe.Detector1Pipeline - INFO - Starting calwebb_detector1 ...
2025-05-13 13:56:32,618 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00014_nis_uncal.fits>,).
2025-05-13 13:56:32,625 - stpipe.Detector1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed
2025-05-13 13:56:32,626 - stpipe.Detector1Pipeline.group_scale - INFO - Step will be skipped
2025-05-13 13:56:32,627 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale done
2025-05-13 13:56:32,758 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00014_nis_uncal.fits>,).
2025-05-13 13:56:32,774 - stpipe.Detector1Pipeline.dq_init - INFO - Using MASK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits
2025-05-13 13:56:32,934 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init done
2025-05-13 13:56:33,078 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00014_nis_uncal.fits>,).
2025-05-13 13:56:33,093 - stpipe.Detector1Pipeline.saturation - INFO - Using SATURATION reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits
2025-05-13 13:56:33,118 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:56:33,119 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:56:33,122 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:56:33,171 - stpipe.Detector1Pipeline.saturation - INFO - Using read_pattern with nframes 4
2025-05-13 13:56:33,969 - stpipe.Detector1Pipeline.saturation - INFO - Detected 4581 saturated pixels
2025-05-13 13:56:33,994 - stpipe.Detector1Pipeline.saturation - INFO - Detected 2 A/D floor pixels
2025-05-13 13:56:33,999 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation done
2025-05-13 13:56:34,140 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00014_nis_uncal.fits>,).
2025-05-13 13:56:34,141 - stpipe.Detector1Pipeline.ipc - INFO - Step skipped.
2025-05-13 13:56:34,278 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00014_nis_uncal.fits>,).
2025-05-13 13:56:34,294 - stpipe.Detector1Pipeline.superbias - INFO - Using SUPERBIAS reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits
2025-05-13 13:56:34,534 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias done
2025-05-13 13:56:34,688 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00014_nis_uncal.fits>,).
2025-05-13 13:56:34,725 - stpipe.Detector1Pipeline.refpix - INFO - NIR full frame data
2025-05-13 13:56:34,726 - stpipe.Detector1Pipeline.refpix - INFO - The following parameters are valid for this mode:
2025-05-13 13:56:34,726 - stpipe.Detector1Pipeline.refpix - INFO - use_side_ref_pixels = True
2025-05-13 13:56:34,726 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_columns = True
2025-05-13 13:56:34,727 - stpipe.Detector1Pipeline.refpix - INFO - side_smoothing_length = 11
2025-05-13 13:56:34,727 - stpipe.Detector1Pipeline.refpix - INFO - side_gain = 1.0
2025-05-13 13:56:34,728 - stpipe.Detector1Pipeline.refpix - INFO - The following parameter is not applicable and is ignored:
2025-05-13 13:56:34,728 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_rows = False
2025-05-13 13:56:38,623 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix done
2025-05-13 13:56:38,758 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00014_nis_uncal.fits>,).
2025-05-13 13:56:38,773 - stpipe.Detector1Pipeline.linearity - INFO - Using Linearity reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits
2025-05-13 13:56:38,807 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:56:38,808 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:56:38,811 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:56:39,464 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity done
2025-05-13 13:56:39,604 - stpipe.Detector1Pipeline.persistence - INFO - Step persistence running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00014_nis_uncal.fits>,).
2025-05-13 13:56:39,605 - stpipe.Detector1Pipeline.persistence - INFO - Step skipped.
2025-05-13 13:56:39,732 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00014_nis_uncal.fits>,).
2025-05-13 13:56:39,748 - stpipe.Detector1Pipeline.dark_current - INFO - Using DARK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits
2025-05-13 13:56:39,960 - stpipe.Detector1Pipeline.dark_current - INFO - Science data nints=1, ngroups=16, nframes=4, groupgap=0
2025-05-13 13:56:39,961 - stpipe.Detector1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=30, nframes=4, groupgap=0
2025-05-13 13:56:40,162 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current done
2025-05-13 13:56:40,308 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00014_nis_uncal.fits>,).
2025-05-13 13:56:40,341 - stpipe.Detector1Pipeline.charge_migration - INFO - Using signal_threshold: 21864.00
2025-05-13 13:56:40,879 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration done
2025-05-13 13:56:41,016 - stpipe.Detector1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00014_nis_uncal.fits>,).
2025-05-13 13:56:41,024 - stpipe.Detector1Pipeline.jump - INFO - CR rejection threshold = 8 sigma
2025-05-13 13:56:41,024 - stpipe.Detector1Pipeline.jump - INFO - Maximum cores to use = half
2025-05-13 13:56:41,081 - stpipe.Detector1Pipeline.jump - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:56:41,089 - stpipe.Detector1Pipeline.jump - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:56:41,248 - stpipe.Detector1Pipeline.jump - INFO - Executing two-point difference method
2025-05-13 13:56:41,249 - stpipe.Detector1Pipeline.jump - INFO - Creating 2 processes for jump detection
2025-05-13 13:56:44,963 - stpipe.Detector1Pipeline.jump - INFO - Flagging Snowballs
2025-05-13 13:56:45,160 - stpipe.Detector1Pipeline.jump - INFO - Total snowballs = 39
2025-05-13 13:56:45,161 - stpipe.Detector1Pipeline.jump - INFO - Total elapsed time = 3.91157 sec
2025-05-13 13:56:45,231 - stpipe.Detector1Pipeline.jump - INFO - The execution time in seconds: 4.207645
2025-05-13 13:56:45,235 - stpipe.Detector1Pipeline.jump - INFO - Step jump done
2025-05-13 13:56:45,378 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step clean_flicker_noise running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00014_nis_uncal.fits>,).
2025-05-13 13:56:45,379 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step skipped.
2025-05-13 13:56:45,507 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00014_nis_uncal.fits>,).
2025-05-13 13:56:45,571 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:56:45,572 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:56:45,596 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using algorithm = OLS_C
2025-05-13 13:56:45,596 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using weighting = optimal
2025-05-13 13:56:46,165 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of multiprocessing slices: 1
2025-05-13 13:56:51,649 - stpipe.Detector1Pipeline.ramp_fit - INFO - Ramp Fitting C Time: 5.47983717918396
2025-05-13 13:56:51,693 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit done
2025-05-13 13:56:51,833 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(2048, 2048) from jw01475006001_02201_00014_nis_uncal.fits>,).
2025-05-13 13:56:51,858 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:56:51,858 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:56:51,860 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:56:51,997 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 2048, 2048) from jw01475006001_02201_00014_nis_uncal.fits>,).
2025-05-13 13:56:52,023 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:56:52,023 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:56:52,025 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:56:52,131 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00014_nis_rateints.fits
2025-05-13 13:56:52,132 - stpipe.Detector1Pipeline - INFO - ... ending calwebb_detector1
2025-05-13 13:56:52,134 - stpipe.Detector1Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:56:52,240 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00014_nis_rate.fits
2025-05-13 13:56:52,241 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline done
2025-05-13 13:56:52,241 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:56:52,351 - CRDS - ERROR - Error determining best reference for 'pars-darkcurrentstep' = No match found.
2025-05-13 13:56:52,354 - stpipe - INFO - PARS-CHARGEMIGRATIONSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-chargemigrationstep_0018.asdf
2025-05-13 13:56:52,363 - stpipe - INFO - PARS-JUMPSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-jumpstep_0087.asdf
2025-05-13 13:56:52,373 - stpipe - INFO - PARS-DETECTOR1PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-detector1pipeline_0001.asdf
2025-05-13 13:56:52,389 - stpipe.Detector1Pipeline - INFO - Detector1Pipeline instance created.
2025-05-13 13:56:52,390 - stpipe.Detector1Pipeline.group_scale - INFO - GroupScaleStep instance created.
2025-05-13 13:56:52,391 - stpipe.Detector1Pipeline.dq_init - INFO - DQInitStep instance created.
2025-05-13 13:56:52,392 - stpipe.Detector1Pipeline.emicorr - INFO - EmiCorrStep instance created.
2025-05-13 13:56:52,393 - stpipe.Detector1Pipeline.saturation - INFO - SaturationStep instance created.
2025-05-13 13:56:52,393 - stpipe.Detector1Pipeline.ipc - INFO - IPCStep instance created.
2025-05-13 13:56:52,394 - stpipe.Detector1Pipeline.superbias - INFO - SuperBiasStep instance created.
2025-05-13 13:56:52,395 - stpipe.Detector1Pipeline.refpix - INFO - RefPixStep instance created.
2025-05-13 13:56:52,396 - stpipe.Detector1Pipeline.rscd - INFO - RscdStep instance created.
2025-05-13 13:56:52,397 - stpipe.Detector1Pipeline.firstframe - INFO - FirstFrameStep instance created.
2025-05-13 13:56:52,398 - stpipe.Detector1Pipeline.lastframe - INFO - LastFrameStep instance created.
2025-05-13 13:56:52,398 - stpipe.Detector1Pipeline.linearity - INFO - LinearityStep instance created.
2025-05-13 13:56:52,399 - stpipe.Detector1Pipeline.dark_current - INFO - DarkCurrentStep instance created.
2025-05-13 13:56:52,400 - stpipe.Detector1Pipeline.reset - INFO - ResetStep instance created.
2025-05-13 13:56:52,401 - stpipe.Detector1Pipeline.persistence - INFO - PersistenceStep instance created.
2025-05-13 13:56:52,402 - stpipe.Detector1Pipeline.charge_migration - INFO - ChargeMigrationStep instance created.
2025-05-13 13:56:52,404 - stpipe.Detector1Pipeline.jump - INFO - JumpStep instance created.
2025-05-13 13:56:52,405 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - CleanFlickerNoiseStep instance created.
2025-05-13 13:56:52,406 - stpipe.Detector1Pipeline.ramp_fit - INFO - RampFitStep instance created.
2025-05-13 13:56:52,407 - stpipe.Detector1Pipeline.gain_scale - INFO - GainScaleStep instance created.
2025-05-13 13:56:52,543 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline running with args ('./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00015_nis_uncal.fits',).
2025-05-13 13:56:52,565 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage1
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_calibrated_ramp: False
steps:
group_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dq_init:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
emicorr:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
algorithm: sequential
nints_to_phase: None
nbins: None
scale_reference: True
onthefly_corr_freq: None
use_n_cycles: 3
fit_ints_separately: False
user_supplied_reffile: None
save_intermediate_results: False
saturation:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
n_pix_grow_sat: 1
use_readpatt: True
ipc:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
superbias:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
refpix:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
odd_even_columns: True
use_side_ref_pixels: True
side_smoothing_length: 11
side_gain: 1.0
odd_even_rows: True
ovr_corr_mitigation_ftr: 3.0
preserve_irs2_refpix: False
irs2_mean_subtraction: False
refpix_algorithm: median
sigreject: 4.0
gaussmooth: 1.0
halfwidth: 30
rscd:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
type: baseline
firstframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
bright_use_group1: False
lastframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
linearity:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_current:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_output: None
average_dark_current: None
reset:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
persistence:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
input_trapsfilled: ''
flag_pers_cutoff: 40.0
save_persistence: False
save_trapsfilled: True
modify_input: False
charge_migration:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
signal_threshold: 21864.0
jump:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
rejection_threshold: 8.0
three_group_rejection_threshold: 6.0
four_group_rejection_threshold: 5.0
maximum_cores: half
flag_4_neighbors: False
max_jump_to_flag_neighbors: 200.0
min_jump_to_flag_neighbors: 10.0
after_jump_flag_dn1: 1000
after_jump_flag_time1: 90
after_jump_flag_dn2: 0
after_jump_flag_time2: 0
expand_large_events: True
min_sat_area: 5
min_jump_area: 15.0
expand_factor: 1.75
use_ellipses: False
sat_required_snowball: True
min_sat_radius_extend: 5.0
sat_expand: 0
edge_size: 20
mask_snowball_core_next_int: True
snowball_time_masked_next_int: 4000
find_showers: False
max_shower_amplitude: 4.0
extend_snr_threshold: 1.2
extend_min_area: 90
extend_inner_radius: 1.0
extend_outer_radius: 2.6
extend_ellipse_expand_ratio: 1.1
time_masked_after_shower: 15.0
min_diffs_single_pass: 10
max_extended_radius: 100
minimum_groups: 3
minimum_sigclip_groups: 100
only_use_ints: True
clean_flicker_noise:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
fit_method: median
fit_by_channel: False
background_method: median
background_box_size: None
mask_science_regions: False
apply_flat_field: False
n_sigma: 2.0
fit_histogram: False
single_mask: True
user_mask: None
save_mask: False
save_background: False
save_noise: False
ramp_fit:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
algorithm: OLS_C
int_name: ''
save_opt: False
opt_name: ''
suppress_one_group: True
firstgroup: None
lastgroup: None
maximum_cores: '1'
gain_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
2025-05-13 13:56:52,666 - stpipe.Detector1Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00015_nis_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'sirskernel', 'superbias']
2025-05-13 13:56:52,669 - stpipe.Detector1Pipeline - INFO - Prefetch for DARK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits'.
2025-05-13 13:56:52,670 - stpipe.Detector1Pipeline - INFO - Prefetch for GAIN reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits'.
2025-05-13 13:56:52,670 - stpipe.Detector1Pipeline - INFO - Prefetch for LINEARITY reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits'.
2025-05-13 13:56:52,670 - stpipe.Detector1Pipeline - INFO - Prefetch for MASK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits'.
2025-05-13 13:56:52,671 - stpipe.Detector1Pipeline - INFO - Prefetch for READNOISE reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits'.
2025-05-13 13:56:52,671 - stpipe.Detector1Pipeline - INFO - Prefetch for REFPIX reference file is 'N/A'.
2025-05-13 13:56:52,672 - stpipe.Detector1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'.
2025-05-13 13:56:52,672 - stpipe.Detector1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'.
2025-05-13 13:56:52,672 - stpipe.Detector1Pipeline - INFO - Prefetch for SATURATION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits'.
2025-05-13 13:56:52,674 - stpipe.Detector1Pipeline - INFO - Prefetch for SIRSKERNEL reference file is 'N/A'.
2025-05-13 13:56:52,674 - stpipe.Detector1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits'.
2025-05-13 13:56:52,675 - stpipe.Detector1Pipeline - INFO - Starting calwebb_detector1 ...
2025-05-13 13:56:52,991 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00015_nis_uncal.fits>,).
2025-05-13 13:56:52,999 - stpipe.Detector1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed
2025-05-13 13:56:52,999 - stpipe.Detector1Pipeline.group_scale - INFO - Step will be skipped
2025-05-13 13:56:53,001 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale done
2025-05-13 13:56:53,124 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00015_nis_uncal.fits>,).
2025-05-13 13:56:53,139 - stpipe.Detector1Pipeline.dq_init - INFO - Using MASK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits
2025-05-13 13:56:53,312 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init done
2025-05-13 13:56:53,454 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00015_nis_uncal.fits>,).
2025-05-13 13:56:53,469 - stpipe.Detector1Pipeline.saturation - INFO - Using SATURATION reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits
2025-05-13 13:56:53,494 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:56:53,494 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:56:53,498 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:56:53,546 - stpipe.Detector1Pipeline.saturation - INFO - Using read_pattern with nframes 4
2025-05-13 13:56:54,346 - stpipe.Detector1Pipeline.saturation - INFO - Detected 4781 saturated pixels
2025-05-13 13:56:54,371 - stpipe.Detector1Pipeline.saturation - INFO - Detected 1 A/D floor pixels
2025-05-13 13:56:54,376 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation done
2025-05-13 13:56:54,515 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00015_nis_uncal.fits>,).
2025-05-13 13:56:54,516 - stpipe.Detector1Pipeline.ipc - INFO - Step skipped.
2025-05-13 13:56:54,641 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00015_nis_uncal.fits>,).
2025-05-13 13:56:54,656 - stpipe.Detector1Pipeline.superbias - INFO - Using SUPERBIAS reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits
2025-05-13 13:56:54,901 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias done
2025-05-13 13:56:55,047 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00015_nis_uncal.fits>,).
2025-05-13 13:56:55,080 - stpipe.Detector1Pipeline.refpix - INFO - NIR full frame data
2025-05-13 13:56:55,081 - stpipe.Detector1Pipeline.refpix - INFO - The following parameters are valid for this mode:
2025-05-13 13:56:55,082 - stpipe.Detector1Pipeline.refpix - INFO - use_side_ref_pixels = True
2025-05-13 13:56:55,082 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_columns = True
2025-05-13 13:56:55,082 - stpipe.Detector1Pipeline.refpix - INFO - side_smoothing_length = 11
2025-05-13 13:56:55,083 - stpipe.Detector1Pipeline.refpix - INFO - side_gain = 1.0
2025-05-13 13:56:55,083 - stpipe.Detector1Pipeline.refpix - INFO - The following parameter is not applicable and is ignored:
2025-05-13 13:56:55,084 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_rows = False
2025-05-13 13:56:59,019 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix done
2025-05-13 13:56:59,161 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00015_nis_uncal.fits>,).
2025-05-13 13:56:59,176 - stpipe.Detector1Pipeline.linearity - INFO - Using Linearity reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits
2025-05-13 13:56:59,218 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:56:59,219 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:56:59,222 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:56:59,888 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity done
2025-05-13 13:57:00,030 - stpipe.Detector1Pipeline.persistence - INFO - Step persistence running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00015_nis_uncal.fits>,).
2025-05-13 13:57:00,031 - stpipe.Detector1Pipeline.persistence - INFO - Step skipped.
2025-05-13 13:57:00,154 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00015_nis_uncal.fits>,).
2025-05-13 13:57:00,170 - stpipe.Detector1Pipeline.dark_current - INFO - Using DARK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits
2025-05-13 13:57:00,372 - stpipe.Detector1Pipeline.dark_current - INFO - Science data nints=1, ngroups=16, nframes=4, groupgap=0
2025-05-13 13:57:00,372 - stpipe.Detector1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=30, nframes=4, groupgap=0
2025-05-13 13:57:00,579 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current done
2025-05-13 13:57:00,723 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00015_nis_uncal.fits>,).
2025-05-13 13:57:00,756 - stpipe.Detector1Pipeline.charge_migration - INFO - Using signal_threshold: 21864.00
2025-05-13 13:57:01,293 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration done
2025-05-13 13:57:01,433 - stpipe.Detector1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00015_nis_uncal.fits>,).
2025-05-13 13:57:01,441 - stpipe.Detector1Pipeline.jump - INFO - CR rejection threshold = 8 sigma
2025-05-13 13:57:01,441 - stpipe.Detector1Pipeline.jump - INFO - Maximum cores to use = half
2025-05-13 13:57:01,512 - stpipe.Detector1Pipeline.jump - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:57:01,521 - stpipe.Detector1Pipeline.jump - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:57:01,681 - stpipe.Detector1Pipeline.jump - INFO - Executing two-point difference method
2025-05-13 13:57:01,682 - stpipe.Detector1Pipeline.jump - INFO - Creating 2 processes for jump detection
2025-05-13 13:57:05,405 - stpipe.Detector1Pipeline.jump - INFO - Flagging Snowballs
2025-05-13 13:57:05,603 - stpipe.Detector1Pipeline.jump - INFO - Total snowballs = 44
2025-05-13 13:57:05,603 - stpipe.Detector1Pipeline.jump - INFO - Total elapsed time = 3.92119 sec
2025-05-13 13:57:05,673 - stpipe.Detector1Pipeline.jump - INFO - The execution time in seconds: 4.231914
2025-05-13 13:57:05,676 - stpipe.Detector1Pipeline.jump - INFO - Step jump done
2025-05-13 13:57:05,814 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step clean_flicker_noise running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00015_nis_uncal.fits>,).
2025-05-13 13:57:05,814 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step skipped.
2025-05-13 13:57:05,938 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00015_nis_uncal.fits>,).
2025-05-13 13:57:05,987 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:57:05,988 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:57:06,012 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using algorithm = OLS_C
2025-05-13 13:57:06,013 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using weighting = optimal
2025-05-13 13:57:06,589 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of multiprocessing slices: 1
2025-05-13 13:57:12,030 - stpipe.Detector1Pipeline.ramp_fit - INFO - Ramp Fitting C Time: 5.436333894729614
2025-05-13 13:57:12,073 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit done
2025-05-13 13:57:12,218 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(2048, 2048) from jw01475006001_02201_00015_nis_uncal.fits>,).
2025-05-13 13:57:12,241 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:57:12,242 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:57:12,244 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:57:12,371 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 2048, 2048) from jw01475006001_02201_00015_nis_uncal.fits>,).
2025-05-13 13:57:12,396 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:57:12,397 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:57:12,399 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:57:12,508 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00015_nis_rateints.fits
2025-05-13 13:57:12,509 - stpipe.Detector1Pipeline - INFO - ... ending calwebb_detector1
2025-05-13 13:57:12,510 - stpipe.Detector1Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:57:12,616 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00015_nis_rate.fits
2025-05-13 13:57:12,616 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline done
2025-05-13 13:57:12,617 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:57:12,739 - CRDS - ERROR - Error determining best reference for 'pars-darkcurrentstep' = No match found.
2025-05-13 13:57:12,742 - stpipe - INFO - PARS-CHARGEMIGRATIONSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-chargemigrationstep_0018.asdf
2025-05-13 13:57:12,750 - stpipe - INFO - PARS-JUMPSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-jumpstep_0087.asdf
2025-05-13 13:57:12,760 - stpipe - INFO - PARS-DETECTOR1PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-detector1pipeline_0001.asdf
2025-05-13 13:57:12,777 - stpipe.Detector1Pipeline - INFO - Detector1Pipeline instance created.
2025-05-13 13:57:12,778 - stpipe.Detector1Pipeline.group_scale - INFO - GroupScaleStep instance created.
2025-05-13 13:57:12,778 - stpipe.Detector1Pipeline.dq_init - INFO - DQInitStep instance created.
2025-05-13 13:57:12,779 - stpipe.Detector1Pipeline.emicorr - INFO - EmiCorrStep instance created.
2025-05-13 13:57:12,780 - stpipe.Detector1Pipeline.saturation - INFO - SaturationStep instance created.
2025-05-13 13:57:12,781 - stpipe.Detector1Pipeline.ipc - INFO - IPCStep instance created.
2025-05-13 13:57:12,782 - stpipe.Detector1Pipeline.superbias - INFO - SuperBiasStep instance created.
2025-05-13 13:57:12,783 - stpipe.Detector1Pipeline.refpix - INFO - RefPixStep instance created.
2025-05-13 13:57:12,784 - stpipe.Detector1Pipeline.rscd - INFO - RscdStep instance created.
2025-05-13 13:57:12,785 - stpipe.Detector1Pipeline.firstframe - INFO - FirstFrameStep instance created.
2025-05-13 13:57:12,785 - stpipe.Detector1Pipeline.lastframe - INFO - LastFrameStep instance created.
2025-05-13 13:57:12,786 - stpipe.Detector1Pipeline.linearity - INFO - LinearityStep instance created.
2025-05-13 13:57:12,787 - stpipe.Detector1Pipeline.dark_current - INFO - DarkCurrentStep instance created.
2025-05-13 13:57:12,788 - stpipe.Detector1Pipeline.reset - INFO - ResetStep instance created.
2025-05-13 13:57:12,789 - stpipe.Detector1Pipeline.persistence - INFO - PersistenceStep instance created.
2025-05-13 13:57:12,790 - stpipe.Detector1Pipeline.charge_migration - INFO - ChargeMigrationStep instance created.
2025-05-13 13:57:12,792 - stpipe.Detector1Pipeline.jump - INFO - JumpStep instance created.
2025-05-13 13:57:12,793 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - CleanFlickerNoiseStep instance created.
2025-05-13 13:57:12,794 - stpipe.Detector1Pipeline.ramp_fit - INFO - RampFitStep instance created.
2025-05-13 13:57:12,795 - stpipe.Detector1Pipeline.gain_scale - INFO - GainScaleStep instance created.
2025-05-13 13:57:12,940 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline running with args ('./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00016_nis_uncal.fits',).
2025-05-13 13:57:12,961 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage1
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_calibrated_ramp: False
steps:
group_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dq_init:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
emicorr:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
algorithm: sequential
nints_to_phase: None
nbins: None
scale_reference: True
onthefly_corr_freq: None
use_n_cycles: 3
fit_ints_separately: False
user_supplied_reffile: None
save_intermediate_results: False
saturation:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
n_pix_grow_sat: 1
use_readpatt: True
ipc:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
superbias:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
refpix:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
odd_even_columns: True
use_side_ref_pixels: True
side_smoothing_length: 11
side_gain: 1.0
odd_even_rows: True
ovr_corr_mitigation_ftr: 3.0
preserve_irs2_refpix: False
irs2_mean_subtraction: False
refpix_algorithm: median
sigreject: 4.0
gaussmooth: 1.0
halfwidth: 30
rscd:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
type: baseline
firstframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
bright_use_group1: False
lastframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
linearity:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_current:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_output: None
average_dark_current: None
reset:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
persistence:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
input_trapsfilled: ''
flag_pers_cutoff: 40.0
save_persistence: False
save_trapsfilled: True
modify_input: False
charge_migration:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
signal_threshold: 21864.0
jump:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
rejection_threshold: 8.0
three_group_rejection_threshold: 6.0
four_group_rejection_threshold: 5.0
maximum_cores: half
flag_4_neighbors: False
max_jump_to_flag_neighbors: 200.0
min_jump_to_flag_neighbors: 10.0
after_jump_flag_dn1: 1000
after_jump_flag_time1: 90
after_jump_flag_dn2: 0
after_jump_flag_time2: 0
expand_large_events: True
min_sat_area: 5
min_jump_area: 15.0
expand_factor: 1.75
use_ellipses: False
sat_required_snowball: True
min_sat_radius_extend: 5.0
sat_expand: 0
edge_size: 20
mask_snowball_core_next_int: True
snowball_time_masked_next_int: 4000
find_showers: False
max_shower_amplitude: 4.0
extend_snr_threshold: 1.2
extend_min_area: 90
extend_inner_radius: 1.0
extend_outer_radius: 2.6
extend_ellipse_expand_ratio: 1.1
time_masked_after_shower: 15.0
min_diffs_single_pass: 10
max_extended_radius: 100
minimum_groups: 3
minimum_sigclip_groups: 100
only_use_ints: True
clean_flicker_noise:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
fit_method: median
fit_by_channel: False
background_method: median
background_box_size: None
mask_science_regions: False
apply_flat_field: False
n_sigma: 2.0
fit_histogram: False
single_mask: True
user_mask: None
save_mask: False
save_background: False
save_noise: False
ramp_fit:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
algorithm: OLS_C
int_name: ''
save_opt: False
opt_name: ''
suppress_one_group: True
firstgroup: None
lastgroup: None
maximum_cores: '1'
gain_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
2025-05-13 13:57:13,074 - stpipe.Detector1Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00016_nis_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'sirskernel', 'superbias']
2025-05-13 13:57:13,077 - stpipe.Detector1Pipeline - INFO - Prefetch for DARK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits'.
2025-05-13 13:57:13,078 - stpipe.Detector1Pipeline - INFO - Prefetch for GAIN reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits'.
2025-05-13 13:57:13,078 - stpipe.Detector1Pipeline - INFO - Prefetch for LINEARITY reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits'.
2025-05-13 13:57:13,079 - stpipe.Detector1Pipeline - INFO - Prefetch for MASK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits'.
2025-05-13 13:57:13,079 - stpipe.Detector1Pipeline - INFO - Prefetch for READNOISE reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits'.
2025-05-13 13:57:13,080 - stpipe.Detector1Pipeline - INFO - Prefetch for REFPIX reference file is 'N/A'.
2025-05-13 13:57:13,080 - stpipe.Detector1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'.
2025-05-13 13:57:13,081 - stpipe.Detector1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'.
2025-05-13 13:57:13,081 - stpipe.Detector1Pipeline - INFO - Prefetch for SATURATION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits'.
2025-05-13 13:57:13,081 - stpipe.Detector1Pipeline - INFO - Prefetch for SIRSKERNEL reference file is 'N/A'.
2025-05-13 13:57:13,082 - stpipe.Detector1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits'.
2025-05-13 13:57:13,084 - stpipe.Detector1Pipeline - INFO - Starting calwebb_detector1 ...
2025-05-13 13:57:13,411 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00016_nis_uncal.fits>,).
2025-05-13 13:57:13,419 - stpipe.Detector1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed
2025-05-13 13:57:13,419 - stpipe.Detector1Pipeline.group_scale - INFO - Step will be skipped
2025-05-13 13:57:13,421 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale done
2025-05-13 13:57:13,545 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00016_nis_uncal.fits>,).
2025-05-13 13:57:13,560 - stpipe.Detector1Pipeline.dq_init - INFO - Using MASK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits
2025-05-13 13:57:13,741 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init done
2025-05-13 13:57:13,878 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00016_nis_uncal.fits>,).
2025-05-13 13:57:13,893 - stpipe.Detector1Pipeline.saturation - INFO - Using SATURATION reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits
2025-05-13 13:57:13,918 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:57:13,919 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:57:13,922 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:57:13,949 - stpipe.Detector1Pipeline.saturation - INFO - Using read_pattern with nframes 4
2025-05-13 13:57:14,751 - stpipe.Detector1Pipeline.saturation - INFO - Detected 4883 saturated pixels
2025-05-13 13:57:14,782 - stpipe.Detector1Pipeline.saturation - INFO - Detected 2 A/D floor pixels
2025-05-13 13:57:14,787 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation done
2025-05-13 13:57:14,926 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00016_nis_uncal.fits>,).
2025-05-13 13:57:14,927 - stpipe.Detector1Pipeline.ipc - INFO - Step skipped.
2025-05-13 13:57:15,052 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00016_nis_uncal.fits>,).
2025-05-13 13:57:15,068 - stpipe.Detector1Pipeline.superbias - INFO - Using SUPERBIAS reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits
2025-05-13 13:57:15,321 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias done
2025-05-13 13:57:15,459 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00016_nis_uncal.fits>,).
2025-05-13 13:57:15,507 - stpipe.Detector1Pipeline.refpix - INFO - NIR full frame data
2025-05-13 13:57:15,507 - stpipe.Detector1Pipeline.refpix - INFO - The following parameters are valid for this mode:
2025-05-13 13:57:15,508 - stpipe.Detector1Pipeline.refpix - INFO - use_side_ref_pixels = True
2025-05-13 13:57:15,508 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_columns = True
2025-05-13 13:57:15,509 - stpipe.Detector1Pipeline.refpix - INFO - side_smoothing_length = 11
2025-05-13 13:57:15,509 - stpipe.Detector1Pipeline.refpix - INFO - side_gain = 1.0
2025-05-13 13:57:15,510 - stpipe.Detector1Pipeline.refpix - INFO - The following parameter is not applicable and is ignored:
2025-05-13 13:57:15,510 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_rows = False
2025-05-13 13:57:19,472 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix done
2025-05-13 13:57:19,613 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00016_nis_uncal.fits>,).
2025-05-13 13:57:19,628 - stpipe.Detector1Pipeline.linearity - INFO - Using Linearity reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits
2025-05-13 13:57:19,677 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:57:19,678 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:57:19,682 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:57:20,341 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity done
2025-05-13 13:57:20,480 - stpipe.Detector1Pipeline.persistence - INFO - Step persistence running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00016_nis_uncal.fits>,).
2025-05-13 13:57:20,481 - stpipe.Detector1Pipeline.persistence - INFO - Step skipped.
2025-05-13 13:57:20,604 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00016_nis_uncal.fits>,).
2025-05-13 13:57:20,620 - stpipe.Detector1Pipeline.dark_current - INFO - Using DARK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits
2025-05-13 13:57:20,836 - stpipe.Detector1Pipeline.dark_current - INFO - Science data nints=1, ngroups=16, nframes=4, groupgap=0
2025-05-13 13:57:20,837 - stpipe.Detector1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=30, nframes=4, groupgap=0
2025-05-13 13:57:21,054 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current done
2025-05-13 13:57:21,199 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00016_nis_uncal.fits>,).
2025-05-13 13:57:21,232 - stpipe.Detector1Pipeline.charge_migration - INFO - Using signal_threshold: 21864.00
2025-05-13 13:57:21,786 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration done
2025-05-13 13:57:21,925 - stpipe.Detector1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00016_nis_uncal.fits>,).
2025-05-13 13:57:21,932 - stpipe.Detector1Pipeline.jump - INFO - CR rejection threshold = 8 sigma
2025-05-13 13:57:21,933 - stpipe.Detector1Pipeline.jump - INFO - Maximum cores to use = half
2025-05-13 13:57:21,989 - stpipe.Detector1Pipeline.jump - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:57:21,997 - stpipe.Detector1Pipeline.jump - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:57:22,158 - stpipe.Detector1Pipeline.jump - INFO - Executing two-point difference method
2025-05-13 13:57:22,159 - stpipe.Detector1Pipeline.jump - INFO - Creating 2 processes for jump detection
2025-05-13 13:57:25,869 - stpipe.Detector1Pipeline.jump - INFO - Flagging Snowballs
2025-05-13 13:57:26,064 - stpipe.Detector1Pipeline.jump - INFO - Total snowballs = 55
2025-05-13 13:57:26,065 - stpipe.Detector1Pipeline.jump - INFO - Total elapsed time = 3.90653 sec
2025-05-13 13:57:26,134 - stpipe.Detector1Pipeline.jump - INFO - The execution time in seconds: 4.202247
2025-05-13 13:57:26,138 - stpipe.Detector1Pipeline.jump - INFO - Step jump done
2025-05-13 13:57:26,276 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step clean_flicker_noise running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00016_nis_uncal.fits>,).
2025-05-13 13:57:26,276 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step skipped.
2025-05-13 13:57:26,405 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00016_nis_uncal.fits>,).
2025-05-13 13:57:26,468 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:57:26,468 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:57:26,493 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using algorithm = OLS_C
2025-05-13 13:57:26,493 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using weighting = optimal
2025-05-13 13:57:27,071 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of multiprocessing slices: 1
2025-05-13 13:57:32,518 - stpipe.Detector1Pipeline.ramp_fit - INFO - Ramp Fitting C Time: 5.442691087722778
2025-05-13 13:57:32,561 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit done
2025-05-13 13:57:32,704 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(2048, 2048) from jw01475006001_02201_00016_nis_uncal.fits>,).
2025-05-13 13:57:32,727 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:57:32,728 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:57:32,730 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:57:32,856 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 2048, 2048) from jw01475006001_02201_00016_nis_uncal.fits>,).
2025-05-13 13:57:32,882 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:57:32,883 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:57:32,885 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:57:32,992 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00016_nis_rateints.fits
2025-05-13 13:57:32,992 - stpipe.Detector1Pipeline - INFO - ... ending calwebb_detector1
2025-05-13 13:57:32,994 - stpipe.Detector1Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:57:33,101 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00016_nis_rate.fits
2025-05-13 13:57:33,102 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline done
2025-05-13 13:57:33,103 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:57:33,213 - CRDS - ERROR - Error determining best reference for 'pars-darkcurrentstep' = No match found.
2025-05-13 13:57:33,217 - stpipe - INFO - PARS-CHARGEMIGRATIONSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-chargemigrationstep_0018.asdf
2025-05-13 13:57:33,225 - stpipe - INFO - PARS-JUMPSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-jumpstep_0087.asdf
2025-05-13 13:57:33,235 - stpipe - INFO - PARS-DETECTOR1PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-detector1pipeline_0001.asdf
2025-05-13 13:57:33,251 - stpipe.Detector1Pipeline - INFO - Detector1Pipeline instance created.
2025-05-13 13:57:33,252 - stpipe.Detector1Pipeline.group_scale - INFO - GroupScaleStep instance created.
2025-05-13 13:57:33,253 - stpipe.Detector1Pipeline.dq_init - INFO - DQInitStep instance created.
2025-05-13 13:57:33,254 - stpipe.Detector1Pipeline.emicorr - INFO - EmiCorrStep instance created.
2025-05-13 13:57:33,255 - stpipe.Detector1Pipeline.saturation - INFO - SaturationStep instance created.
2025-05-13 13:57:33,256 - stpipe.Detector1Pipeline.ipc - INFO - IPCStep instance created.
2025-05-13 13:57:33,257 - stpipe.Detector1Pipeline.superbias - INFO - SuperBiasStep instance created.
2025-05-13 13:57:33,258 - stpipe.Detector1Pipeline.refpix - INFO - RefPixStep instance created.
2025-05-13 13:57:33,259 - stpipe.Detector1Pipeline.rscd - INFO - RscdStep instance created.
2025-05-13 13:57:33,260 - stpipe.Detector1Pipeline.firstframe - INFO - FirstFrameStep instance created.
2025-05-13 13:57:33,261 - stpipe.Detector1Pipeline.lastframe - INFO - LastFrameStep instance created.
2025-05-13 13:57:33,262 - stpipe.Detector1Pipeline.linearity - INFO - LinearityStep instance created.
2025-05-13 13:57:33,262 - stpipe.Detector1Pipeline.dark_current - INFO - DarkCurrentStep instance created.
2025-05-13 13:57:33,263 - stpipe.Detector1Pipeline.reset - INFO - ResetStep instance created.
2025-05-13 13:57:33,264 - stpipe.Detector1Pipeline.persistence - INFO - PersistenceStep instance created.
2025-05-13 13:57:33,265 - stpipe.Detector1Pipeline.charge_migration - INFO - ChargeMigrationStep instance created.
2025-05-13 13:57:33,267 - stpipe.Detector1Pipeline.jump - INFO - JumpStep instance created.
2025-05-13 13:57:33,268 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - CleanFlickerNoiseStep instance created.
2025-05-13 13:57:33,269 - stpipe.Detector1Pipeline.ramp_fit - INFO - RampFitStep instance created.
2025-05-13 13:57:33,270 - stpipe.Detector1Pipeline.gain_scale - INFO - GainScaleStep instance created.
2025-05-13 13:57:33,410 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline running with args ('./nis_im_demo_data/Obs006/uncal/jw01475006001_02201_00017_nis_uncal.fits',).
2025-05-13 13:57:33,433 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage1
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_calibrated_ramp: False
steps:
group_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dq_init:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
emicorr:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
algorithm: sequential
nints_to_phase: None
nbins: None
scale_reference: True
onthefly_corr_freq: None
use_n_cycles: 3
fit_ints_separately: False
user_supplied_reffile: None
save_intermediate_results: False
saturation:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
n_pix_grow_sat: 1
use_readpatt: True
ipc:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
superbias:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
refpix:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
odd_even_columns: True
use_side_ref_pixels: True
side_smoothing_length: 11
side_gain: 1.0
odd_even_rows: True
ovr_corr_mitigation_ftr: 3.0
preserve_irs2_refpix: False
irs2_mean_subtraction: False
refpix_algorithm: median
sigreject: 4.0
gaussmooth: 1.0
halfwidth: 30
rscd:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
type: baseline
firstframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
bright_use_group1: False
lastframe:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
linearity:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_current:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
dark_output: None
average_dark_current: None
reset:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
persistence:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
input_trapsfilled: ''
flag_pers_cutoff: 40.0
save_persistence: False
save_trapsfilled: True
modify_input: False
charge_migration:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
signal_threshold: 21864.0
jump:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
rejection_threshold: 8.0
three_group_rejection_threshold: 6.0
four_group_rejection_threshold: 5.0
maximum_cores: half
flag_4_neighbors: False
max_jump_to_flag_neighbors: 200.0
min_jump_to_flag_neighbors: 10.0
after_jump_flag_dn1: 1000
after_jump_flag_time1: 90
after_jump_flag_dn2: 0
after_jump_flag_time2: 0
expand_large_events: True
min_sat_area: 5
min_jump_area: 15.0
expand_factor: 1.75
use_ellipses: False
sat_required_snowball: True
min_sat_radius_extend: 5.0
sat_expand: 0
edge_size: 20
mask_snowball_core_next_int: True
snowball_time_masked_next_int: 4000
find_showers: False
max_shower_amplitude: 4.0
extend_snr_threshold: 1.2
extend_min_area: 90
extend_inner_radius: 1.0
extend_outer_radius: 2.6
extend_ellipse_expand_ratio: 1.1
time_masked_after_shower: 15.0
min_diffs_single_pass: 10
max_extended_radius: 100
minimum_groups: 3
minimum_sigclip_groups: 100
only_use_ints: True
clean_flicker_noise:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
fit_method: median
fit_by_channel: False
background_method: median
background_box_size: None
mask_science_regions: False
apply_flat_field: False
n_sigma: 2.0
fit_histogram: False
single_mask: True
user_mask: None
save_mask: False
save_background: False
save_noise: False
ramp_fit:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
algorithm: OLS_C
int_name: ''
save_opt: False
opt_name: ''
suppress_one_group: True
firstgroup: None
lastgroup: None
maximum_cores: '1'
gain_scale:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
2025-05-13 13:57:33,535 - stpipe.Detector1Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00017_nis_uncal.fits' reftypes = ['dark', 'gain', 'linearity', 'mask', 'readnoise', 'refpix', 'reset', 'rscd', 'saturation', 'sirskernel', 'superbias']
2025-05-13 13:57:33,538 - stpipe.Detector1Pipeline - INFO - Prefetch for DARK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits'.
2025-05-13 13:57:33,539 - stpipe.Detector1Pipeline - INFO - Prefetch for GAIN reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits'.
2025-05-13 13:57:33,539 - stpipe.Detector1Pipeline - INFO - Prefetch for LINEARITY reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits'.
2025-05-13 13:57:33,540 - stpipe.Detector1Pipeline - INFO - Prefetch for MASK reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits'.
2025-05-13 13:57:33,540 - stpipe.Detector1Pipeline - INFO - Prefetch for READNOISE reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits'.
2025-05-13 13:57:33,541 - stpipe.Detector1Pipeline - INFO - Prefetch for REFPIX reference file is 'N/A'.
2025-05-13 13:57:33,541 - stpipe.Detector1Pipeline - INFO - Prefetch for RESET reference file is 'N/A'.
2025-05-13 13:57:33,542 - stpipe.Detector1Pipeline - INFO - Prefetch for RSCD reference file is 'N/A'.
2025-05-13 13:57:33,542 - stpipe.Detector1Pipeline - INFO - Prefetch for SATURATION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits'.
2025-05-13 13:57:33,543 - stpipe.Detector1Pipeline - INFO - Prefetch for SIRSKERNEL reference file is 'N/A'.
2025-05-13 13:57:33,544 - stpipe.Detector1Pipeline - INFO - Prefetch for SUPERBIAS reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits'.
2025-05-13 13:57:33,545 - stpipe.Detector1Pipeline - INFO - Starting calwebb_detector1 ...
2025-05-13 13:57:33,884 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00017_nis_uncal.fits>,).
2025-05-13 13:57:33,892 - stpipe.Detector1Pipeline.group_scale - INFO - NFRAMES and FRMDIVSR are equal; correction not needed
2025-05-13 13:57:33,892 - stpipe.Detector1Pipeline.group_scale - INFO - Step will be skipped
2025-05-13 13:57:33,894 - stpipe.Detector1Pipeline.group_scale - INFO - Step group_scale done
2025-05-13 13:57:34,021 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00017_nis_uncal.fits>,).
2025-05-13 13:57:34,036 - stpipe.Detector1Pipeline.dq_init - INFO - Using MASK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_mask_0029.fits
2025-05-13 13:57:34,210 - stpipe.Detector1Pipeline.dq_init - INFO - Step dq_init done
2025-05-13 13:57:34,352 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00017_nis_uncal.fits>,).
2025-05-13 13:57:34,368 - stpipe.Detector1Pipeline.saturation - INFO - Using SATURATION reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_saturation_0015.fits
2025-05-13 13:57:34,393 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:57:34,394 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:57:34,398 - stpipe.Detector1Pipeline.saturation - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:57:34,447 - stpipe.Detector1Pipeline.saturation - INFO - Using read_pattern with nframes 4
2025-05-13 13:57:35,257 - stpipe.Detector1Pipeline.saturation - INFO - Detected 4739 saturated pixels
2025-05-13 13:57:35,281 - stpipe.Detector1Pipeline.saturation - INFO - Detected 2 A/D floor pixels
2025-05-13 13:57:35,287 - stpipe.Detector1Pipeline.saturation - INFO - Step saturation done
2025-05-13 13:57:35,424 - stpipe.Detector1Pipeline.ipc - INFO - Step ipc running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00017_nis_uncal.fits>,).
2025-05-13 13:57:35,425 - stpipe.Detector1Pipeline.ipc - INFO - Step skipped.
2025-05-13 13:57:35,553 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00017_nis_uncal.fits>,).
2025-05-13 13:57:35,569 - stpipe.Detector1Pipeline.superbias - INFO - Using SUPERBIAS reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_superbias_0230.fits
2025-05-13 13:57:35,814 - stpipe.Detector1Pipeline.superbias - INFO - Step superbias done
2025-05-13 13:57:35,954 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00017_nis_uncal.fits>,).
2025-05-13 13:57:35,987 - stpipe.Detector1Pipeline.refpix - INFO - NIR full frame data
2025-05-13 13:57:35,988 - stpipe.Detector1Pipeline.refpix - INFO - The following parameters are valid for this mode:
2025-05-13 13:57:35,988 - stpipe.Detector1Pipeline.refpix - INFO - use_side_ref_pixels = True
2025-05-13 13:57:35,989 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_columns = True
2025-05-13 13:57:35,989 - stpipe.Detector1Pipeline.refpix - INFO - side_smoothing_length = 11
2025-05-13 13:57:35,989 - stpipe.Detector1Pipeline.refpix - INFO - side_gain = 1.0
2025-05-13 13:57:35,990 - stpipe.Detector1Pipeline.refpix - INFO - The following parameter is not applicable and is ignored:
2025-05-13 13:57:35,990 - stpipe.Detector1Pipeline.refpix - INFO - odd_even_rows = False
2025-05-13 13:57:39,914 - stpipe.Detector1Pipeline.refpix - INFO - Step refpix done
2025-05-13 13:57:40,057 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00017_nis_uncal.fits>,).
2025-05-13 13:57:40,073 - stpipe.Detector1Pipeline.linearity - INFO - Using Linearity reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_linearity_0017.fits
2025-05-13 13:57:40,115 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWILLUM does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:57:40,115 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword LOWRESP does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:57:40,119 - stpipe.Detector1Pipeline.linearity - WARNING - Keyword UNCERTAIN does not correspond to an existing DQ mnemonic, so will be ignored
2025-05-13 13:57:40,790 - stpipe.Detector1Pipeline.linearity - INFO - Step linearity done
2025-05-13 13:57:40,929 - stpipe.Detector1Pipeline.persistence - INFO - Step persistence running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00017_nis_uncal.fits>,).
2025-05-13 13:57:40,930 - stpipe.Detector1Pipeline.persistence - INFO - Step skipped.
2025-05-13 13:57:41,059 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00017_nis_uncal.fits>,).
2025-05-13 13:57:41,075 - stpipe.Detector1Pipeline.dark_current - INFO - Using DARK reference file /home/runner/crds/references/jwst/niriss/jwst_niriss_dark_0207.fits
2025-05-13 13:57:41,278 - stpipe.Detector1Pipeline.dark_current - INFO - Science data nints=1, ngroups=16, nframes=4, groupgap=0
2025-05-13 13:57:41,279 - stpipe.Detector1Pipeline.dark_current - INFO - Dark data nints=1, ngroups=30, nframes=4, groupgap=0
2025-05-13 13:57:41,490 - stpipe.Detector1Pipeline.dark_current - INFO - Step dark_current done
2025-05-13 13:57:41,636 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00017_nis_uncal.fits>,).
2025-05-13 13:57:41,669 - stpipe.Detector1Pipeline.charge_migration - INFO - Using signal_threshold: 21864.00
2025-05-13 13:57:42,201 - stpipe.Detector1Pipeline.charge_migration - INFO - Step charge_migration done
2025-05-13 13:57:42,346 - stpipe.Detector1Pipeline.jump - INFO - Step jump running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00017_nis_uncal.fits>,).
2025-05-13 13:57:42,353 - stpipe.Detector1Pipeline.jump - INFO - CR rejection threshold = 8 sigma
2025-05-13 13:57:42,353 - stpipe.Detector1Pipeline.jump - INFO - Maximum cores to use = half
2025-05-13 13:57:42,424 - stpipe.Detector1Pipeline.jump - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:57:42,432 - stpipe.Detector1Pipeline.jump - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:57:42,597 - stpipe.Detector1Pipeline.jump - INFO - Executing two-point difference method
2025-05-13 13:57:42,598 - stpipe.Detector1Pipeline.jump - INFO - Creating 2 processes for jump detection
2025-05-13 13:57:46,296 - stpipe.Detector1Pipeline.jump - INFO - Flagging Snowballs
2025-05-13 13:57:46,490 - stpipe.Detector1Pipeline.jump - INFO - Total snowballs = 41
2025-05-13 13:57:46,491 - stpipe.Detector1Pipeline.jump - INFO - Total elapsed time = 3.89286 sec
2025-05-13 13:57:46,560 - stpipe.Detector1Pipeline.jump - INFO - The execution time in seconds: 4.207111
2025-05-13 13:57:46,564 - stpipe.Detector1Pipeline.jump - INFO - Step jump done
2025-05-13 13:57:46,704 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step clean_flicker_noise running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00017_nis_uncal.fits>,).
2025-05-13 13:57:46,705 - stpipe.Detector1Pipeline.clean_flicker_noise - INFO - Step skipped.
2025-05-13 13:57:46,834 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit running with args (<RampModel(1, 16, 2048, 2048) from jw01475006001_02201_00017_nis_uncal.fits>,).
2025-05-13 13:57:46,882 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using READNOISE reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_readnoise_0005.fits
2025-05-13 13:57:46,883 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using GAIN reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_gain_0006.fits
2025-05-13 13:57:46,907 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using algorithm = OLS_C
2025-05-13 13:57:46,908 - stpipe.Detector1Pipeline.ramp_fit - INFO - Using weighting = optimal
2025-05-13 13:57:47,486 - stpipe.Detector1Pipeline.ramp_fit - INFO - Number of multiprocessing slices: 1
2025-05-13 13:57:52,944 - stpipe.Detector1Pipeline.ramp_fit - INFO - Ramp Fitting C Time: 5.453453302383423
2025-05-13 13:57:52,988 - stpipe.Detector1Pipeline.ramp_fit - INFO - Step ramp_fit done
2025-05-13 13:57:53,133 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<ImageModel(2048, 2048) from jw01475006001_02201_00017_nis_uncal.fits>,).
2025-05-13 13:57:53,157 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:57:53,158 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:57:53,160 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:57:53,287 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale running with args (<CubeModel(1, 2048, 2048) from jw01475006001_02201_00017_nis_uncal.fits>,).
2025-05-13 13:57:53,314 - stpipe.Detector1Pipeline.gain_scale - INFO - GAINFACT not found in gain reference file
2025-05-13 13:57:53,314 - stpipe.Detector1Pipeline.gain_scale - INFO - Step will be skipped
2025-05-13 13:57:53,316 - stpipe.Detector1Pipeline.gain_scale - INFO - Step gain_scale done
2025-05-13 13:57:53,424 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00017_nis_rateints.fits
2025-05-13 13:57:53,425 - stpipe.Detector1Pipeline - INFO - ... ending calwebb_detector1
2025-05-13 13:57:53,427 - stpipe.Detector1Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:57:53,534 - stpipe.Detector1Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00017_nis_rate.fits
2025-05-13 13:57:53,535 - stpipe.Detector1Pipeline - INFO - Step Detector1Pipeline done
2025-05-13 13:57:53,535 - stpipe - INFO - Results used jwst version: 1.18.0
# Print out the time benchmark
time1 = time.perf_counter()
print(f"Runtime for Detector1: {time1 - time0:0.0f} seconds")
Runtime for Detector1: 554 seconds
Exploring the data#
Identify *_rate.fits files and verify which pipeline steps were run and
which calibration reference files were applied.
The header contains information about which calibration steps were completed and skipped and which reference files were used to process the data.
if dodet1:
# find rate files
rate_files = sorted(glob.glob(os.path.join(det1_dir, '*_rate.fits')))
# Read in file as datamodel
rate_f = datamodels.open(rate_files[0])
# Check which steps were run
rate_f.meta.cal_step.instance
Check which reference files were used to calibrate the dataset:
if dodet1:
rate_f.meta.ref_file.instance
6. Image2 Pipeline#
In the Image2 stage of the pipeline,
calibrated unrectified data products are created (*_cal.fits or
*_calints.fits files, depending on whether the input files are
*_rate.fits or *_rateints.fits).
In this pipeline processing stage, the world coordinate system (WCS) is assigned, the data are flat fielded, and a photometric calibration is applied to convert from units of countrate (ADU/s) to surface brightness (MJy/sr).
By default, the background subtraction step
and the resampling step
are turned off for NIRISS at this stage of the pipeline. The background
subtraction is turned off since there is no background template for the
imaging mode and the local background is removed during the background
correction for photometric measurements around individual sources. The
resampling step occurs during the Image3 stage by default. While the
resampling step can be turned on during the Image2 stage to, e.g.,
generate a source catalog for each image, the data quality from the
Image3 stage will be better since the bad pixels, which adversely affect
both the centroids and photometry in individual images, will be mostly
removed.
time_image2 = time.perf_counter()
# Set up a dictionary to define how the Image2 pipeline should be configured.
# Boilerplate dictionary setup
image2dict = {}
image2dict['assign_wcs'], image2dict['flat_field'] = {}, {}
image2dict['photom'], image2dict['resample'] = {}, {}
# Overrides for whether or not certain steps should be skipped (example)
#image2dict['resample']['skip'] = False
# Overrides for various reference files
# Files should be in the base local directory or provide full path
#image2dict['assign_wcs']['override_distortion'] = 'myfile.asdf' # Spatial distortion (ASDF file)
#image2dict['assign_wcs']['override_filteroffset'] = 'myfile.asdf' # Imager filter offsets (ASDF file)
#image2dict['assign_wcs']['override_specwcs'] = 'myfile.asdf' # Spectral distortion (ASDF file)
#image2dict['assign_wcs']['override_wavelengthrange'] = 'myfile.asdf' # Wavelength channel mapping (ASDF file)
#image2dict['flat_field']['override_flat'] = 'myfile.fits' # Pixel flatfield
#image2dict['photom']['override_photom'] = 'myfile.fits' # Photometric calibration array
Find and sort all of the input files, ensuring use of absolute paths
sstring = os.path.join(det1_dir, 'jw*rate.fits') # Use files from the detector1 output folder
rate_files = sorted(glob.glob(sstring))
for ii in range(0, len(rate_files)):
rate_files[ii] = os.path.abspath(rate_files[ii])
rate_files = np.array(rate_files)
print(f"Found {str(len(rate_files))} science files")
Found 17 science files
# Run Image2 stage of pipeline, specifying:
# output directory to save *_cal.fits files
# save_results flag set to True so the rate files are saved
if doimage2:
for rate in rate_files:
cal_result = Image2Pipeline.call(rate, output_dir=image2_dir, steps=image2dict, save_results=True)
else:
print("Skipping Image2 processing.")
2025-05-13 13:57:53,711 - CRDS - INFO - Fetching /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-resamplestep_0001.asdf 1.2 K bytes (1 / 1 files) (0 / 1.2 K bytes)
2025-05-13 13:57:53,822 - stpipe - INFO - PARS-RESAMPLESTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-resamplestep_0001.asdf
2025-05-13 13:57:53,830 - CRDS - INFO - Fetching /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-image2pipeline_0002.asdf 1.3 K bytes (1 / 1 files) (0 / 1.3 K bytes)
2025-05-13 13:57:53,971 - stpipe - INFO - PARS-IMAGE2PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-image2pipeline_0002.asdf
2025-05-13 13:57:53,982 - stpipe.Image2Pipeline - INFO - Image2Pipeline instance created.
2025-05-13 13:57:53,983 - stpipe.Image2Pipeline.bkg_subtract - INFO - BackgroundStep instance created.
2025-05-13 13:57:53,984 - stpipe.Image2Pipeline.assign_wcs - INFO - AssignWcsStep instance created.
2025-05-13 13:57:53,985 - stpipe.Image2Pipeline.flat_field - INFO - FlatFieldStep instance created.
2025-05-13 13:57:53,986 - stpipe.Image2Pipeline.photom - INFO - PhotomStep instance created.
2025-05-13 13:57:53,987 - stpipe.Image2Pipeline.resample - INFO - ResampleStep instance created.
2025-05-13 13:57:54,127 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline running with args (np.str_('/home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00001_nis_rate.fits'),).
2025-05-13 13:57:54,134 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage2
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_bsub: False
steps:
bkg_subtract:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
save_combined_background: False
sigma: 3.0
maxiters: None
wfss_mmag_extract: None
wfss_maxiter: 5
wfss_rms_stop: 0.0
wfss_outlier_percent: 1.0
assign_wcs:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
sip_approx: True
sip_max_pix_error: 0.01
sip_degree: None
sip_max_inv_pix_error: 0.01
sip_inv_degree: None
sip_npoints: 12
slit_y_low: -0.55
slit_y_high: 0.55
flat_field:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_interpolated_flat: False
user_supplied_flat: None
inverse: False
photom:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
inverse: False
source_type: None
mrs_time_correction: True
resample:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
pixfrac: 1.0
kernel: square
fillval: NAN
weight_type: ivm
output_shape: None
crpix: None
crval: None
rotation: None
pixel_scale_ratio: 1.0
pixel_scale: None
output_wcs: ''
single: False
blendheaders: True
in_memory: True
2025-05-13 13:57:54,181 - stpipe.Image2Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00001_nis_rate.fits' reftypes = ['area', 'camera', 'collimator', 'dflat', 'disperser', 'distortion', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'photom', 'regions', 'sflat', 'specwcs', 'wavelengthrange']
2025-05-13 13:57:54,185 - CRDS - INFO - Fetching /home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits 16.8 M bytes (1 / 5 files) (0 / 83.9 M bytes)
2025-05-13 13:57:55,884 - CRDS - INFO - Fetching /home/runner/crds/references/jwst/niriss/jwst_niriss_distortion_0047.asdf 9.9 K bytes (2 / 5 files) (16.8 M / 83.9 M bytes)
2025-05-13 13:57:55,998 - CRDS - INFO - Fetching /home/runner/crds/references/jwst/niriss/jwst_niriss_filteroffset_0006.asdf 5.4 K bytes (3 / 5 files) (16.8 M / 83.9 M bytes)
2025-05-13 13:57:56,088 - CRDS - INFO - Fetching /home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits 67.1 M bytes (4 / 5 files) (16.8 M / 83.9 M bytes)
2025-05-13 13:57:59,944 - CRDS - INFO - Fetching /home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits 14.4 K bytes (5 / 5 files) (83.9 M / 83.9 M bytes)
2025-05-13 13:58:00,080 - stpipe.Image2Pipeline - INFO - Prefetch for AREA reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits'.
2025-05-13 13:58:00,080 - stpipe.Image2Pipeline - INFO - Prefetch for CAMERA reference file is 'N/A'.
2025-05-13 13:58:00,081 - stpipe.Image2Pipeline - INFO - Prefetch for COLLIMATOR reference file is 'N/A'.
2025-05-13 13:58:00,081 - stpipe.Image2Pipeline - INFO - Prefetch for DFLAT reference file is 'N/A'.
2025-05-13 13:58:00,082 - stpipe.Image2Pipeline - INFO - Prefetch for DISPERSER reference file is 'N/A'.
2025-05-13 13:58:00,082 - stpipe.Image2Pipeline - INFO - Prefetch for DISTORTION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_distortion_0047.asdf'.
2025-05-13 13:58:00,083 - stpipe.Image2Pipeline - INFO - Prefetch for FFLAT reference file is 'N/A'.
2025-05-13 13:58:00,083 - stpipe.Image2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_filteroffset_0006.asdf'.
2025-05-13 13:58:00,083 - stpipe.Image2Pipeline - INFO - Prefetch for FLAT reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits'.
2025-05-13 13:58:00,084 - stpipe.Image2Pipeline - INFO - Prefetch for FORE reference file is 'N/A'.
2025-05-13 13:58:00,084 - stpipe.Image2Pipeline - INFO - Prefetch for FPA reference file is 'N/A'.
2025-05-13 13:58:00,085 - stpipe.Image2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'.
2025-05-13 13:58:00,085 - stpipe.Image2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'.
2025-05-13 13:58:00,085 - stpipe.Image2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'.
2025-05-13 13:58:00,087 - stpipe.Image2Pipeline - INFO - Prefetch for MSA reference file is 'N/A'.
2025-05-13 13:58:00,087 - stpipe.Image2Pipeline - INFO - Prefetch for OTE reference file is 'N/A'.
2025-05-13 13:58:00,088 - stpipe.Image2Pipeline - INFO - Prefetch for PHOTOM reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits'.
2025-05-13 13:58:00,088 - stpipe.Image2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'.
2025-05-13 13:58:00,089 - stpipe.Image2Pipeline - INFO - Prefetch for SFLAT reference file is 'N/A'.
2025-05-13 13:58:00,089 - stpipe.Image2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'.
2025-05-13 13:58:00,089 - stpipe.Image2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is 'N/A'.
2025-05-13 13:58:00,090 - stpipe.Image2Pipeline - INFO - Starting calwebb_image2 ...
2025-05-13 13:58:00,091 - stpipe.Image2Pipeline - INFO - Processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00001_nis
2025-05-13 13:58:00,091 - stpipe.Image2Pipeline - INFO - Working on input /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00001_nis_rate.fits ...
2025-05-13 13:58:00,281 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00001_nis_image2pipeline.fits>,).
2025-05-13 13:58:00,449 - stpipe.Image2Pipeline.assign_wcs - INFO - Offsets from filteroffset file are 0.0, 0.0
2025-05-13 13:58:00,503 - stpipe.Image2Pipeline.assign_wcs - INFO - Update S_REGION to POLYGON ICRS 303.741801417 -26.792492010 303.782450102 -26.783405986 303.772146372 -26.747427859 303.731535770 -26.756495597
2025-05-13 13:58:00,504 - stpipe.Image2Pipeline.assign_wcs - INFO - assign_wcs updated S_REGION to POLYGON ICRS 303.741801417 -26.792492010 303.782450102 -26.783405986 303.772146372 -26.747427859 303.731535770 -26.756495597
2025-05-13 13:58:00,505 - stpipe.Image2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs
2025-05-13 13:58:00,557 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs done
2025-05-13 13:58:00,699 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00001_nis_image2pipeline.fits>,).
2025-05-13 13:58:00,787 - stpipe.Image2Pipeline.flat_field - INFO - Using FLAT reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits
2025-05-13 13:58:00,787 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type FFLAT
2025-05-13 13:58:00,788 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type SFLAT
2025-05-13 13:58:00,788 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type DFLAT
2025-05-13 13:58:00,935 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field done
2025-05-13 13:58:01,077 - stpipe.Image2Pipeline.photom - INFO - Step photom running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00001_nis_image2pipeline.fits>,).
2025-05-13 13:58:01,102 - stpipe.Image2Pipeline.photom - INFO - Using photom reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits
2025-05-13 13:58:01,103 - stpipe.Image2Pipeline.photom - INFO - Using area reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits
2025-05-13 13:58:01,133 - stpipe.Image2Pipeline.photom - INFO - Using instrument: NIRISS
2025-05-13 13:58:01,134 - stpipe.Image2Pipeline.photom - INFO - detector: NIS
2025-05-13 13:58:01,134 - stpipe.Image2Pipeline.photom - INFO - exp_type: NIS_IMAGE
2025-05-13 13:58:01,135 - stpipe.Image2Pipeline.photom - INFO - filter: CLEAR
2025-05-13 13:58:01,135 - stpipe.Image2Pipeline.photom - INFO - pupil: F150W
2025-05-13 13:58:01,162 - stpipe.Image2Pipeline.photom - INFO - Pixel area map copied to output.
2025-05-13 13:58:01,163 - stpipe.Image2Pipeline.photom - INFO - Values for PIXAR_SR and PIXAR_A2 obtained from AREA reference file.
2025-05-13 13:58:01,164 - stpipe.Image2Pipeline.photom - INFO - PHOTMJSR value: 0.256435
2025-05-13 13:58:01,212 - stpipe.Image2Pipeline.photom - INFO - Step photom done
2025-05-13 13:58:01,357 - stpipe.Image2Pipeline.resample - INFO - Step resample running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00001_nis_image2pipeline.fits>,).
2025-05-13 13:58:01,358 - stpipe.Image2Pipeline.resample - INFO - Step skipped.
2025-05-13 13:58:01,359 - stpipe.Image2Pipeline - INFO - Finished processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00001_nis
2025-05-13 13:58:01,360 - stpipe.Image2Pipeline - INFO - ... ending calwebb_image2
2025-05-13 13:58:01,360 - stpipe.Image2Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:58:01,529 - stpipe.Image2Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00001_nis_cal.fits
2025-05-13 13:58:01,530 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline done
2025-05-13 13:58:01,530 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:58:01,582 - stpipe - INFO - PARS-RESAMPLESTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-resamplestep_0001.asdf
2025-05-13 13:58:01,590 - stpipe - INFO - PARS-IMAGE2PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-image2pipeline_0002.asdf
2025-05-13 13:58:01,601 - stpipe.Image2Pipeline - INFO - Image2Pipeline instance created.
2025-05-13 13:58:01,602 - stpipe.Image2Pipeline.bkg_subtract - INFO - BackgroundStep instance created.
2025-05-13 13:58:01,603 - stpipe.Image2Pipeline.assign_wcs - INFO - AssignWcsStep instance created.
2025-05-13 13:58:01,604 - stpipe.Image2Pipeline.flat_field - INFO - FlatFieldStep instance created.
2025-05-13 13:58:01,606 - stpipe.Image2Pipeline.photom - INFO - PhotomStep instance created.
2025-05-13 13:58:01,607 - stpipe.Image2Pipeline.resample - INFO - ResampleStep instance created.
2025-05-13 13:58:01,747 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline running with args (np.str_('/home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00002_nis_rate.fits'),).
2025-05-13 13:58:01,755 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage2
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_bsub: False
steps:
bkg_subtract:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
save_combined_background: False
sigma: 3.0
maxiters: None
wfss_mmag_extract: None
wfss_maxiter: 5
wfss_rms_stop: 0.0
wfss_outlier_percent: 1.0
assign_wcs:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
sip_approx: True
sip_max_pix_error: 0.01
sip_degree: None
sip_max_inv_pix_error: 0.01
sip_inv_degree: None
sip_npoints: 12
slit_y_low: -0.55
slit_y_high: 0.55
flat_field:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_interpolated_flat: False
user_supplied_flat: None
inverse: False
photom:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
inverse: False
source_type: None
mrs_time_correction: True
resample:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
pixfrac: 1.0
kernel: square
fillval: NAN
weight_type: ivm
output_shape: None
crpix: None
crval: None
rotation: None
pixel_scale_ratio: 1.0
pixel_scale: None
output_wcs: ''
single: False
blendheaders: True
in_memory: True
2025-05-13 13:58:01,801 - stpipe.Image2Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00002_nis_rate.fits' reftypes = ['area', 'camera', 'collimator', 'dflat', 'disperser', 'distortion', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'photom', 'regions', 'sflat', 'specwcs', 'wavelengthrange']
2025-05-13 13:58:01,805 - stpipe.Image2Pipeline - INFO - Prefetch for AREA reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits'.
2025-05-13 13:58:01,805 - stpipe.Image2Pipeline - INFO - Prefetch for CAMERA reference file is 'N/A'.
2025-05-13 13:58:01,806 - stpipe.Image2Pipeline - INFO - Prefetch for COLLIMATOR reference file is 'N/A'.
2025-05-13 13:58:01,806 - stpipe.Image2Pipeline - INFO - Prefetch for DFLAT reference file is 'N/A'.
2025-05-13 13:58:01,807 - stpipe.Image2Pipeline - INFO - Prefetch for DISPERSER reference file is 'N/A'.
2025-05-13 13:58:01,807 - stpipe.Image2Pipeline - INFO - Prefetch for DISTORTION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_distortion_0047.asdf'.
2025-05-13 13:58:01,808 - stpipe.Image2Pipeline - INFO - Prefetch for FFLAT reference file is 'N/A'.
2025-05-13 13:58:01,809 - stpipe.Image2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_filteroffset_0006.asdf'.
2025-05-13 13:58:01,809 - stpipe.Image2Pipeline - INFO - Prefetch for FLAT reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits'.
2025-05-13 13:58:01,810 - stpipe.Image2Pipeline - INFO - Prefetch for FORE reference file is 'N/A'.
2025-05-13 13:58:01,810 - stpipe.Image2Pipeline - INFO - Prefetch for FPA reference file is 'N/A'.
2025-05-13 13:58:01,811 - stpipe.Image2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'.
2025-05-13 13:58:01,811 - stpipe.Image2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'.
2025-05-13 13:58:01,811 - stpipe.Image2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'.
2025-05-13 13:58:01,812 - stpipe.Image2Pipeline - INFO - Prefetch for MSA reference file is 'N/A'.
2025-05-13 13:58:01,812 - stpipe.Image2Pipeline - INFO - Prefetch for OTE reference file is 'N/A'.
2025-05-13 13:58:01,812 - stpipe.Image2Pipeline - INFO - Prefetch for PHOTOM reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits'.
2025-05-13 13:58:01,814 - stpipe.Image2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'.
2025-05-13 13:58:01,814 - stpipe.Image2Pipeline - INFO - Prefetch for SFLAT reference file is 'N/A'.
2025-05-13 13:58:01,814 - stpipe.Image2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'.
2025-05-13 13:58:01,815 - stpipe.Image2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is 'N/A'.
2025-05-13 13:58:01,816 - stpipe.Image2Pipeline - INFO - Starting calwebb_image2 ...
2025-05-13 13:58:01,816 - stpipe.Image2Pipeline - INFO - Processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00002_nis
2025-05-13 13:58:01,817 - stpipe.Image2Pipeline - INFO - Working on input /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00002_nis_rate.fits ...
2025-05-13 13:58:02,005 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00002_nis_image2pipeline.fits>,).
2025-05-13 13:58:02,164 - stpipe.Image2Pipeline.assign_wcs - INFO - Offsets from filteroffset file are 0.0, 0.0
2025-05-13 13:58:02,212 - stpipe.Image2Pipeline.assign_wcs - INFO - Update S_REGION to POLYGON ICRS 303.738161312 -26.798046265 303.778812243 -26.788961155 303.768509024 -26.752982798 303.727896181 -26.762049621
2025-05-13 13:58:02,213 - stpipe.Image2Pipeline.assign_wcs - INFO - assign_wcs updated S_REGION to POLYGON ICRS 303.738161312 -26.798046265 303.778812243 -26.788961155 303.768509024 -26.752982798 303.727896181 -26.762049621
2025-05-13 13:58:02,214 - stpipe.Image2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs
2025-05-13 13:58:02,258 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs done
2025-05-13 13:58:02,398 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00002_nis_image2pipeline.fits>,).
2025-05-13 13:58:02,477 - stpipe.Image2Pipeline.flat_field - INFO - Using FLAT reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits
2025-05-13 13:58:02,478 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type FFLAT
2025-05-13 13:58:02,478 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type SFLAT
2025-05-13 13:58:02,479 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type DFLAT
2025-05-13 13:58:02,625 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field done
2025-05-13 13:58:02,769 - stpipe.Image2Pipeline.photom - INFO - Step photom running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00002_nis_image2pipeline.fits>,).
2025-05-13 13:58:02,790 - stpipe.Image2Pipeline.photom - INFO - Using photom reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits
2025-05-13 13:58:02,791 - stpipe.Image2Pipeline.photom - INFO - Using area reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits
2025-05-13 13:58:02,823 - stpipe.Image2Pipeline.photom - INFO - Using instrument: NIRISS
2025-05-13 13:58:02,824 - stpipe.Image2Pipeline.photom - INFO - detector: NIS
2025-05-13 13:58:02,824 - stpipe.Image2Pipeline.photom - INFO - exp_type: NIS_IMAGE
2025-05-13 13:58:02,825 - stpipe.Image2Pipeline.photom - INFO - filter: CLEAR
2025-05-13 13:58:02,825 - stpipe.Image2Pipeline.photom - INFO - pupil: F150W
2025-05-13 13:58:02,849 - stpipe.Image2Pipeline.photom - INFO - Pixel area map copied to output.
2025-05-13 13:58:02,850 - stpipe.Image2Pipeline.photom - INFO - Values for PIXAR_SR and PIXAR_A2 obtained from AREA reference file.
2025-05-13 13:58:02,851 - stpipe.Image2Pipeline.photom - INFO - PHOTMJSR value: 0.256435
2025-05-13 13:58:02,899 - stpipe.Image2Pipeline.photom - INFO - Step photom done
2025-05-13 13:58:03,043 - stpipe.Image2Pipeline.resample - INFO - Step resample running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00002_nis_image2pipeline.fits>,).
2025-05-13 13:58:03,043 - stpipe.Image2Pipeline.resample - INFO - Step skipped.
2025-05-13 13:58:03,045 - stpipe.Image2Pipeline - INFO - Finished processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00002_nis
2025-05-13 13:58:03,046 - stpipe.Image2Pipeline - INFO - ... ending calwebb_image2
2025-05-13 13:58:03,046 - stpipe.Image2Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:58:03,214 - stpipe.Image2Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00002_nis_cal.fits
2025-05-13 13:58:03,215 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline done
2025-05-13 13:58:03,216 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:58:03,267 - stpipe - INFO - PARS-RESAMPLESTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-resamplestep_0001.asdf
2025-05-13 13:58:03,276 - stpipe - INFO - PARS-IMAGE2PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-image2pipeline_0002.asdf
2025-05-13 13:58:03,287 - stpipe.Image2Pipeline - INFO - Image2Pipeline instance created.
2025-05-13 13:58:03,288 - stpipe.Image2Pipeline.bkg_subtract - INFO - BackgroundStep instance created.
2025-05-13 13:58:03,289 - stpipe.Image2Pipeline.assign_wcs - INFO - AssignWcsStep instance created.
2025-05-13 13:58:03,290 - stpipe.Image2Pipeline.flat_field - INFO - FlatFieldStep instance created.
2025-05-13 13:58:03,291 - stpipe.Image2Pipeline.photom - INFO - PhotomStep instance created.
2025-05-13 13:58:03,292 - stpipe.Image2Pipeline.resample - INFO - ResampleStep instance created.
2025-05-13 13:58:03,435 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline running with args (np.str_('/home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00003_nis_rate.fits'),).
2025-05-13 13:58:03,443 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage2
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_bsub: False
steps:
bkg_subtract:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
save_combined_background: False
sigma: 3.0
maxiters: None
wfss_mmag_extract: None
wfss_maxiter: 5
wfss_rms_stop: 0.0
wfss_outlier_percent: 1.0
assign_wcs:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
sip_approx: True
sip_max_pix_error: 0.01
sip_degree: None
sip_max_inv_pix_error: 0.01
sip_inv_degree: None
sip_npoints: 12
slit_y_low: -0.55
slit_y_high: 0.55
flat_field:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_interpolated_flat: False
user_supplied_flat: None
inverse: False
photom:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
inverse: False
source_type: None
mrs_time_correction: True
resample:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
pixfrac: 1.0
kernel: square
fillval: NAN
weight_type: ivm
output_shape: None
crpix: None
crval: None
rotation: None
pixel_scale_ratio: 1.0
pixel_scale: None
output_wcs: ''
single: False
blendheaders: True
in_memory: True
2025-05-13 13:58:03,489 - stpipe.Image2Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00003_nis_rate.fits' reftypes = ['area', 'camera', 'collimator', 'dflat', 'disperser', 'distortion', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'photom', 'regions', 'sflat', 'specwcs', 'wavelengthrange']
2025-05-13 13:58:03,493 - stpipe.Image2Pipeline - INFO - Prefetch for AREA reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits'.
2025-05-13 13:58:03,494 - stpipe.Image2Pipeline - INFO - Prefetch for CAMERA reference file is 'N/A'.
2025-05-13 13:58:03,494 - stpipe.Image2Pipeline - INFO - Prefetch for COLLIMATOR reference file is 'N/A'.
2025-05-13 13:58:03,494 - stpipe.Image2Pipeline - INFO - Prefetch for DFLAT reference file is 'N/A'.
2025-05-13 13:58:03,495 - stpipe.Image2Pipeline - INFO - Prefetch for DISPERSER reference file is 'N/A'.
2025-05-13 13:58:03,496 - stpipe.Image2Pipeline - INFO - Prefetch for DISTORTION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_distortion_0047.asdf'.
2025-05-13 13:58:03,496 - stpipe.Image2Pipeline - INFO - Prefetch for FFLAT reference file is 'N/A'.
2025-05-13 13:58:03,497 - stpipe.Image2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_filteroffset_0006.asdf'.
2025-05-13 13:58:03,497 - stpipe.Image2Pipeline - INFO - Prefetch for FLAT reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits'.
2025-05-13 13:58:03,498 - stpipe.Image2Pipeline - INFO - Prefetch for FORE reference file is 'N/A'.
2025-05-13 13:58:03,498 - stpipe.Image2Pipeline - INFO - Prefetch for FPA reference file is 'N/A'.
2025-05-13 13:58:03,499 - stpipe.Image2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'.
2025-05-13 13:58:03,499 - stpipe.Image2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'.
2025-05-13 13:58:03,499 - stpipe.Image2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'.
2025-05-13 13:58:03,500 - stpipe.Image2Pipeline - INFO - Prefetch for MSA reference file is 'N/A'.
2025-05-13 13:58:03,500 - stpipe.Image2Pipeline - INFO - Prefetch for OTE reference file is 'N/A'.
2025-05-13 13:58:03,501 - stpipe.Image2Pipeline - INFO - Prefetch for PHOTOM reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits'.
2025-05-13 13:58:03,501 - stpipe.Image2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'.
2025-05-13 13:58:03,502 - stpipe.Image2Pipeline - INFO - Prefetch for SFLAT reference file is 'N/A'.
2025-05-13 13:58:03,502 - stpipe.Image2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'.
2025-05-13 13:58:03,502 - stpipe.Image2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is 'N/A'.
2025-05-13 13:58:03,503 - stpipe.Image2Pipeline - INFO - Starting calwebb_image2 ...
2025-05-13 13:58:03,504 - stpipe.Image2Pipeline - INFO - Processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00003_nis
2025-05-13 13:58:03,504 - stpipe.Image2Pipeline - INFO - Working on input /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00003_nis_rate.fits ...
2025-05-13 13:58:03,702 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00003_nis_image2pipeline.fits>,).
2025-05-13 13:58:03,858 - stpipe.Image2Pipeline.assign_wcs - INFO - Offsets from filteroffset file are 0.0, 0.0
2025-05-13 13:58:03,907 - stpipe.Image2Pipeline.assign_wcs - INFO - Update S_REGION to POLYGON ICRS 303.748023413 -26.795741097 303.788672699 -26.786653071 303.778366453 -26.750675452 303.737755249 -26.759745189
2025-05-13 13:58:03,908 - stpipe.Image2Pipeline.assign_wcs - INFO - assign_wcs updated S_REGION to POLYGON ICRS 303.748023413 -26.795741097 303.788672699 -26.786653071 303.778366453 -26.750675452 303.737755249 -26.759745189
2025-05-13 13:58:03,909 - stpipe.Image2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs
2025-05-13 13:58:03,954 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs done
2025-05-13 13:58:04,101 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00003_nis_image2pipeline.fits>,).
2025-05-13 13:58:04,180 - stpipe.Image2Pipeline.flat_field - INFO - Using FLAT reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits
2025-05-13 13:58:04,181 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type FFLAT
2025-05-13 13:58:04,181 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type SFLAT
2025-05-13 13:58:04,182 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type DFLAT
2025-05-13 13:58:04,338 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field done
2025-05-13 13:58:04,484 - stpipe.Image2Pipeline.photom - INFO - Step photom running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00003_nis_image2pipeline.fits>,).
2025-05-13 13:58:04,504 - stpipe.Image2Pipeline.photom - INFO - Using photom reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits
2025-05-13 13:58:04,505 - stpipe.Image2Pipeline.photom - INFO - Using area reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits
2025-05-13 13:58:04,539 - stpipe.Image2Pipeline.photom - INFO - Using instrument: NIRISS
2025-05-13 13:58:04,539 - stpipe.Image2Pipeline.photom - INFO - detector: NIS
2025-05-13 13:58:04,540 - stpipe.Image2Pipeline.photom - INFO - exp_type: NIS_IMAGE
2025-05-13 13:58:04,540 - stpipe.Image2Pipeline.photom - INFO - filter: CLEAR
2025-05-13 13:58:04,541 - stpipe.Image2Pipeline.photom - INFO - pupil: F150W
2025-05-13 13:58:04,565 - stpipe.Image2Pipeline.photom - INFO - Pixel area map copied to output.
2025-05-13 13:58:04,566 - stpipe.Image2Pipeline.photom - INFO - Values for PIXAR_SR and PIXAR_A2 obtained from AREA reference file.
2025-05-13 13:58:04,567 - stpipe.Image2Pipeline.photom - INFO - PHOTMJSR value: 0.256435
2025-05-13 13:58:04,615 - stpipe.Image2Pipeline.photom - INFO - Step photom done
2025-05-13 13:58:04,762 - stpipe.Image2Pipeline.resample - INFO - Step resample running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00003_nis_image2pipeline.fits>,).
2025-05-13 13:58:04,763 - stpipe.Image2Pipeline.resample - INFO - Step skipped.
2025-05-13 13:58:04,764 - stpipe.Image2Pipeline - INFO - Finished processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00003_nis
2025-05-13 13:58:04,765 - stpipe.Image2Pipeline - INFO - ... ending calwebb_image2
2025-05-13 13:58:04,765 - stpipe.Image2Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:58:04,932 - stpipe.Image2Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00003_nis_cal.fits
2025-05-13 13:58:04,932 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline done
2025-05-13 13:58:04,933 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:58:04,984 - stpipe - INFO - PARS-RESAMPLESTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-resamplestep_0001.asdf
2025-05-13 13:58:04,992 - stpipe - INFO - PARS-IMAGE2PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-image2pipeline_0002.asdf
2025-05-13 13:58:05,003 - stpipe.Image2Pipeline - INFO - Image2Pipeline instance created.
2025-05-13 13:58:05,004 - stpipe.Image2Pipeline.bkg_subtract - INFO - BackgroundStep instance created.
2025-05-13 13:58:05,005 - stpipe.Image2Pipeline.assign_wcs - INFO - AssignWcsStep instance created.
2025-05-13 13:58:05,007 - stpipe.Image2Pipeline.flat_field - INFO - FlatFieldStep instance created.
2025-05-13 13:58:05,008 - stpipe.Image2Pipeline.photom - INFO - PhotomStep instance created.
2025-05-13 13:58:05,009 - stpipe.Image2Pipeline.resample - INFO - ResampleStep instance created.
2025-05-13 13:58:05,156 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline running with args (np.str_('/home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00004_nis_rate.fits'),).
2025-05-13 13:58:05,163 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage2
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_bsub: False
steps:
bkg_subtract:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
save_combined_background: False
sigma: 3.0
maxiters: None
wfss_mmag_extract: None
wfss_maxiter: 5
wfss_rms_stop: 0.0
wfss_outlier_percent: 1.0
assign_wcs:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
sip_approx: True
sip_max_pix_error: 0.01
sip_degree: None
sip_max_inv_pix_error: 0.01
sip_inv_degree: None
sip_npoints: 12
slit_y_low: -0.55
slit_y_high: 0.55
flat_field:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_interpolated_flat: False
user_supplied_flat: None
inverse: False
photom:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
inverse: False
source_type: None
mrs_time_correction: True
resample:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
pixfrac: 1.0
kernel: square
fillval: NAN
weight_type: ivm
output_shape: None
crpix: None
crval: None
rotation: None
pixel_scale_ratio: 1.0
pixel_scale: None
output_wcs: ''
single: False
blendheaders: True
in_memory: True
2025-05-13 13:58:05,209 - stpipe.Image2Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00004_nis_rate.fits' reftypes = ['area', 'camera', 'collimator', 'dflat', 'disperser', 'distortion', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'photom', 'regions', 'sflat', 'specwcs', 'wavelengthrange']
2025-05-13 13:58:05,212 - stpipe.Image2Pipeline - INFO - Prefetch for AREA reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits'.
2025-05-13 13:58:05,213 - stpipe.Image2Pipeline - INFO - Prefetch for CAMERA reference file is 'N/A'.
2025-05-13 13:58:05,213 - stpipe.Image2Pipeline - INFO - Prefetch for COLLIMATOR reference file is 'N/A'.
2025-05-13 13:58:05,214 - stpipe.Image2Pipeline - INFO - Prefetch for DFLAT reference file is 'N/A'.
2025-05-13 13:58:05,215 - stpipe.Image2Pipeline - INFO - Prefetch for DISPERSER reference file is 'N/A'.
2025-05-13 13:58:05,215 - stpipe.Image2Pipeline - INFO - Prefetch for DISTORTION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_distortion_0047.asdf'.
2025-05-13 13:58:05,215 - stpipe.Image2Pipeline - INFO - Prefetch for FFLAT reference file is 'N/A'.
2025-05-13 13:58:05,216 - stpipe.Image2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_filteroffset_0006.asdf'.
2025-05-13 13:58:05,217 - stpipe.Image2Pipeline - INFO - Prefetch for FLAT reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits'.
2025-05-13 13:58:05,217 - stpipe.Image2Pipeline - INFO - Prefetch for FORE reference file is 'N/A'.
2025-05-13 13:58:05,218 - stpipe.Image2Pipeline - INFO - Prefetch for FPA reference file is 'N/A'.
2025-05-13 13:58:05,218 - stpipe.Image2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'.
2025-05-13 13:58:05,219 - stpipe.Image2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'.
2025-05-13 13:58:05,219 - stpipe.Image2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'.
2025-05-13 13:58:05,219 - stpipe.Image2Pipeline - INFO - Prefetch for MSA reference file is 'N/A'.
2025-05-13 13:58:05,220 - stpipe.Image2Pipeline - INFO - Prefetch for OTE reference file is 'N/A'.
2025-05-13 13:58:05,220 - stpipe.Image2Pipeline - INFO - Prefetch for PHOTOM reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits'.
2025-05-13 13:58:05,221 - stpipe.Image2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'.
2025-05-13 13:58:05,221 - stpipe.Image2Pipeline - INFO - Prefetch for SFLAT reference file is 'N/A'.
2025-05-13 13:58:05,223 - stpipe.Image2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'.
2025-05-13 13:58:05,223 - stpipe.Image2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is 'N/A'.
2025-05-13 13:58:05,224 - stpipe.Image2Pipeline - INFO - Starting calwebb_image2 ...
2025-05-13 13:58:05,224 - stpipe.Image2Pipeline - INFO - Processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00004_nis
2025-05-13 13:58:05,225 - stpipe.Image2Pipeline - INFO - Working on input /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00004_nis_rate.fits ...
2025-05-13 13:58:05,417 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00004_nis_image2pipeline.fits>,).
2025-05-13 13:58:05,576 - stpipe.Image2Pipeline.assign_wcs - INFO - Offsets from filteroffset file are 0.0, 0.0
2025-05-13 13:58:05,624 - stpipe.Image2Pipeline.assign_wcs - INFO - Update S_REGION to POLYGON ICRS 303.745440687 -26.786937957 303.786087038 -26.777850709 303.775782455 -26.741872893 303.735174180 -26.750941854
2025-05-13 13:58:05,625 - stpipe.Image2Pipeline.assign_wcs - INFO - assign_wcs updated S_REGION to POLYGON ICRS 303.745440687 -26.786937957 303.786087038 -26.777850709 303.775782455 -26.741872893 303.735174180 -26.750941854
2025-05-13 13:58:05,626 - stpipe.Image2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs
2025-05-13 13:58:05,671 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs done
2025-05-13 13:58:05,821 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00004_nis_image2pipeline.fits>,).
2025-05-13 13:58:05,904 - stpipe.Image2Pipeline.flat_field - INFO - Using FLAT reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits
2025-05-13 13:58:05,905 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type FFLAT
2025-05-13 13:58:05,906 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type SFLAT
2025-05-13 13:58:05,906 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type DFLAT
2025-05-13 13:58:06,064 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field done
2025-05-13 13:58:06,211 - stpipe.Image2Pipeline.photom - INFO - Step photom running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00004_nis_image2pipeline.fits>,).
2025-05-13 13:58:06,232 - stpipe.Image2Pipeline.photom - INFO - Using photom reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits
2025-05-13 13:58:06,233 - stpipe.Image2Pipeline.photom - INFO - Using area reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits
2025-05-13 13:58:06,266 - stpipe.Image2Pipeline.photom - INFO - Using instrument: NIRISS
2025-05-13 13:58:06,267 - stpipe.Image2Pipeline.photom - INFO - detector: NIS
2025-05-13 13:58:06,267 - stpipe.Image2Pipeline.photom - INFO - exp_type: NIS_IMAGE
2025-05-13 13:58:06,268 - stpipe.Image2Pipeline.photom - INFO - filter: CLEAR
2025-05-13 13:58:06,268 - stpipe.Image2Pipeline.photom - INFO - pupil: F150W
2025-05-13 13:58:06,293 - stpipe.Image2Pipeline.photom - INFO - Pixel area map copied to output.
2025-05-13 13:58:06,293 - stpipe.Image2Pipeline.photom - INFO - Values for PIXAR_SR and PIXAR_A2 obtained from AREA reference file.
2025-05-13 13:58:06,294 - stpipe.Image2Pipeline.photom - INFO - PHOTMJSR value: 0.256435
2025-05-13 13:58:06,343 - stpipe.Image2Pipeline.photom - INFO - Step photom done
2025-05-13 13:58:06,493 - stpipe.Image2Pipeline.resample - INFO - Step resample running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00004_nis_image2pipeline.fits>,).
2025-05-13 13:58:06,493 - stpipe.Image2Pipeline.resample - INFO - Step skipped.
2025-05-13 13:58:06,495 - stpipe.Image2Pipeline - INFO - Finished processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00004_nis
2025-05-13 13:58:06,496 - stpipe.Image2Pipeline - INFO - ... ending calwebb_image2
2025-05-13 13:58:06,496 - stpipe.Image2Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:58:06,664 - stpipe.Image2Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00004_nis_cal.fits
2025-05-13 13:58:06,665 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline done
2025-05-13 13:58:06,665 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:58:06,716 - stpipe - INFO - PARS-RESAMPLESTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-resamplestep_0001.asdf
2025-05-13 13:58:06,724 - stpipe - INFO - PARS-IMAGE2PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-image2pipeline_0002.asdf
2025-05-13 13:58:06,735 - stpipe.Image2Pipeline - INFO - Image2Pipeline instance created.
2025-05-13 13:58:06,736 - stpipe.Image2Pipeline.bkg_subtract - INFO - BackgroundStep instance created.
2025-05-13 13:58:06,737 - stpipe.Image2Pipeline.assign_wcs - INFO - AssignWcsStep instance created.
2025-05-13 13:58:06,738 - stpipe.Image2Pipeline.flat_field - INFO - FlatFieldStep instance created.
2025-05-13 13:58:06,739 - stpipe.Image2Pipeline.photom - INFO - PhotomStep instance created.
2025-05-13 13:58:06,740 - stpipe.Image2Pipeline.resample - INFO - ResampleStep instance created.
2025-05-13 13:58:06,887 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline running with args (np.str_('/home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00005_nis_rate.fits'),).
2025-05-13 13:58:06,894 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage2
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_bsub: False
steps:
bkg_subtract:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
save_combined_background: False
sigma: 3.0
maxiters: None
wfss_mmag_extract: None
wfss_maxiter: 5
wfss_rms_stop: 0.0
wfss_outlier_percent: 1.0
assign_wcs:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
sip_approx: True
sip_max_pix_error: 0.01
sip_degree: None
sip_max_inv_pix_error: 0.01
sip_inv_degree: None
sip_npoints: 12
slit_y_low: -0.55
slit_y_high: 0.55
flat_field:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_interpolated_flat: False
user_supplied_flat: None
inverse: False
photom:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
inverse: False
source_type: None
mrs_time_correction: True
resample:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
pixfrac: 1.0
kernel: square
fillval: NAN
weight_type: ivm
output_shape: None
crpix: None
crval: None
rotation: None
pixel_scale_ratio: 1.0
pixel_scale: None
output_wcs: ''
single: False
blendheaders: True
in_memory: True
2025-05-13 13:58:06,940 - stpipe.Image2Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00005_nis_rate.fits' reftypes = ['area', 'camera', 'collimator', 'dflat', 'disperser', 'distortion', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'photom', 'regions', 'sflat', 'specwcs', 'wavelengthrange']
2025-05-13 13:58:06,944 - stpipe.Image2Pipeline - INFO - Prefetch for AREA reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits'.
2025-05-13 13:58:06,945 - stpipe.Image2Pipeline - INFO - Prefetch for CAMERA reference file is 'N/A'.
2025-05-13 13:58:06,945 - stpipe.Image2Pipeline - INFO - Prefetch for COLLIMATOR reference file is 'N/A'.
2025-05-13 13:58:06,946 - stpipe.Image2Pipeline - INFO - Prefetch for DFLAT reference file is 'N/A'.
2025-05-13 13:58:06,946 - stpipe.Image2Pipeline - INFO - Prefetch for DISPERSER reference file is 'N/A'.
2025-05-13 13:58:06,946 - stpipe.Image2Pipeline - INFO - Prefetch for DISTORTION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_distortion_0047.asdf'.
2025-05-13 13:58:06,948 - stpipe.Image2Pipeline - INFO - Prefetch for FFLAT reference file is 'N/A'.
2025-05-13 13:58:06,948 - stpipe.Image2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_filteroffset_0006.asdf'.
2025-05-13 13:58:06,948 - stpipe.Image2Pipeline - INFO - Prefetch for FLAT reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits'.
2025-05-13 13:58:06,949 - stpipe.Image2Pipeline - INFO - Prefetch for FORE reference file is 'N/A'.
2025-05-13 13:58:06,949 - stpipe.Image2Pipeline - INFO - Prefetch for FPA reference file is 'N/A'.
2025-05-13 13:58:06,950 - stpipe.Image2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'.
2025-05-13 13:58:06,950 - stpipe.Image2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'.
2025-05-13 13:58:06,950 - stpipe.Image2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'.
2025-05-13 13:58:06,952 - stpipe.Image2Pipeline - INFO - Prefetch for MSA reference file is 'N/A'.
2025-05-13 13:58:06,952 - stpipe.Image2Pipeline - INFO - Prefetch for OTE reference file is 'N/A'.
2025-05-13 13:58:06,953 - stpipe.Image2Pipeline - INFO - Prefetch for PHOTOM reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits'.
2025-05-13 13:58:06,953 - stpipe.Image2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'.
2025-05-13 13:58:06,953 - stpipe.Image2Pipeline - INFO - Prefetch for SFLAT reference file is 'N/A'.
2025-05-13 13:58:06,954 - stpipe.Image2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'.
2025-05-13 13:58:06,954 - stpipe.Image2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is 'N/A'.
2025-05-13 13:58:06,955 - stpipe.Image2Pipeline - INFO - Starting calwebb_image2 ...
2025-05-13 13:58:06,955 - stpipe.Image2Pipeline - INFO - Processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00005_nis
2025-05-13 13:58:06,956 - stpipe.Image2Pipeline - INFO - Working on input /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00005_nis_rate.fits ...
2025-05-13 13:58:07,147 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00005_nis_image2pipeline.fits>,).
2025-05-13 13:58:07,303 - stpipe.Image2Pipeline.assign_wcs - INFO - Offsets from filteroffset file are 0.0, 0.0
2025-05-13 13:58:07,351 - stpipe.Image2Pipeline.assign_wcs - INFO - Update S_REGION to POLYGON ICRS 303.735579108 -26.789243079 303.776227074 -26.780158645 303.765925405 -26.744180116 303.725315519 -26.753246266
2025-05-13 13:58:07,351 - stpipe.Image2Pipeline.assign_wcs - INFO - assign_wcs updated S_REGION to POLYGON ICRS 303.735579108 -26.789243079 303.776227074 -26.780158645 303.765925405 -26.744180116 303.725315519 -26.753246266
2025-05-13 13:58:07,352 - stpipe.Image2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs
2025-05-13 13:58:07,396 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs done
2025-05-13 13:58:07,541 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00005_nis_image2pipeline.fits>,).
2025-05-13 13:58:07,624 - stpipe.Image2Pipeline.flat_field - INFO - Using FLAT reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits
2025-05-13 13:58:07,624 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type FFLAT
2025-05-13 13:58:07,625 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type SFLAT
2025-05-13 13:58:07,625 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type DFLAT
2025-05-13 13:58:07,783 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field done
2025-05-13 13:58:07,936 - stpipe.Image2Pipeline.photom - INFO - Step photom running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00005_nis_image2pipeline.fits>,).
2025-05-13 13:58:07,957 - stpipe.Image2Pipeline.photom - INFO - Using photom reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits
2025-05-13 13:58:07,957 - stpipe.Image2Pipeline.photom - INFO - Using area reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits
2025-05-13 13:58:07,990 - stpipe.Image2Pipeline.photom - INFO - Using instrument: NIRISS
2025-05-13 13:58:07,991 - stpipe.Image2Pipeline.photom - INFO - detector: NIS
2025-05-13 13:58:07,991 - stpipe.Image2Pipeline.photom - INFO - exp_type: NIS_IMAGE
2025-05-13 13:58:07,991 - stpipe.Image2Pipeline.photom - INFO - filter: CLEAR
2025-05-13 13:58:07,992 - stpipe.Image2Pipeline.photom - INFO - pupil: F150W
2025-05-13 13:58:08,017 - stpipe.Image2Pipeline.photom - INFO - Pixel area map copied to output.
2025-05-13 13:58:08,017 - stpipe.Image2Pipeline.photom - INFO - Values for PIXAR_SR and PIXAR_A2 obtained from AREA reference file.
2025-05-13 13:58:08,018 - stpipe.Image2Pipeline.photom - INFO - PHOTMJSR value: 0.256435
2025-05-13 13:58:08,066 - stpipe.Image2Pipeline.photom - INFO - Step photom done
2025-05-13 13:58:08,217 - stpipe.Image2Pipeline.resample - INFO - Step resample running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00005_nis_image2pipeline.fits>,).
2025-05-13 13:58:08,217 - stpipe.Image2Pipeline.resample - INFO - Step skipped.
2025-05-13 13:58:08,219 - stpipe.Image2Pipeline - INFO - Finished processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00005_nis
2025-05-13 13:58:08,220 - stpipe.Image2Pipeline - INFO - ... ending calwebb_image2
2025-05-13 13:58:08,220 - stpipe.Image2Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:58:08,389 - stpipe.Image2Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00005_nis_cal.fits
2025-05-13 13:58:08,389 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline done
2025-05-13 13:58:08,390 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:58:08,441 - stpipe - INFO - PARS-RESAMPLESTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-resamplestep_0001.asdf
2025-05-13 13:58:08,449 - stpipe - INFO - PARS-IMAGE2PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-image2pipeline_0002.asdf
2025-05-13 13:58:08,460 - stpipe.Image2Pipeline - INFO - Image2Pipeline instance created.
2025-05-13 13:58:08,461 - stpipe.Image2Pipeline.bkg_subtract - INFO - BackgroundStep instance created.
2025-05-13 13:58:08,462 - stpipe.Image2Pipeline.assign_wcs - INFO - AssignWcsStep instance created.
2025-05-13 13:58:08,463 - stpipe.Image2Pipeline.flat_field - INFO - FlatFieldStep instance created.
2025-05-13 13:58:08,464 - stpipe.Image2Pipeline.photom - INFO - PhotomStep instance created.
2025-05-13 13:58:08,465 - stpipe.Image2Pipeline.resample - INFO - ResampleStep instance created.
2025-05-13 13:58:08,612 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline running with args (np.str_('/home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00006_nis_rate.fits'),).
2025-05-13 13:58:08,619 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage2
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_bsub: False
steps:
bkg_subtract:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
save_combined_background: False
sigma: 3.0
maxiters: None
wfss_mmag_extract: None
wfss_maxiter: 5
wfss_rms_stop: 0.0
wfss_outlier_percent: 1.0
assign_wcs:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
sip_approx: True
sip_max_pix_error: 0.01
sip_degree: None
sip_max_inv_pix_error: 0.01
sip_inv_degree: None
sip_npoints: 12
slit_y_low: -0.55
slit_y_high: 0.55
flat_field:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_interpolated_flat: False
user_supplied_flat: None
inverse: False
photom:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
inverse: False
source_type: None
mrs_time_correction: True
resample:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
pixfrac: 1.0
kernel: square
fillval: NAN
weight_type: ivm
output_shape: None
crpix: None
crval: None
rotation: None
pixel_scale_ratio: 1.0
pixel_scale: None
output_wcs: ''
single: False
blendheaders: True
in_memory: True
2025-05-13 13:58:08,666 - stpipe.Image2Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00006_nis_rate.fits' reftypes = ['area', 'camera', 'collimator', 'dflat', 'disperser', 'distortion', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'photom', 'regions', 'sflat', 'specwcs', 'wavelengthrange']
2025-05-13 13:58:08,670 - stpipe.Image2Pipeline - INFO - Prefetch for AREA reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits'.
2025-05-13 13:58:08,670 - stpipe.Image2Pipeline - INFO - Prefetch for CAMERA reference file is 'N/A'.
2025-05-13 13:58:08,671 - stpipe.Image2Pipeline - INFO - Prefetch for COLLIMATOR reference file is 'N/A'.
2025-05-13 13:58:08,671 - stpipe.Image2Pipeline - INFO - Prefetch for DFLAT reference file is 'N/A'.
2025-05-13 13:58:08,672 - stpipe.Image2Pipeline - INFO - Prefetch for DISPERSER reference file is 'N/A'.
2025-05-13 13:58:08,672 - stpipe.Image2Pipeline - INFO - Prefetch for DISTORTION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_distortion_0047.asdf'.
2025-05-13 13:58:08,673 - stpipe.Image2Pipeline - INFO - Prefetch for FFLAT reference file is 'N/A'.
2025-05-13 13:58:08,673 - stpipe.Image2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_filteroffset_0006.asdf'.
2025-05-13 13:58:08,674 - stpipe.Image2Pipeline - INFO - Prefetch for FLAT reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits'.
2025-05-13 13:58:08,674 - stpipe.Image2Pipeline - INFO - Prefetch for FORE reference file is 'N/A'.
2025-05-13 13:58:08,674 - stpipe.Image2Pipeline - INFO - Prefetch for FPA reference file is 'N/A'.
2025-05-13 13:58:08,675 - stpipe.Image2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'.
2025-05-13 13:58:08,675 - stpipe.Image2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'.
2025-05-13 13:58:08,675 - stpipe.Image2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'.
2025-05-13 13:58:08,676 - stpipe.Image2Pipeline - INFO - Prefetch for MSA reference file is 'N/A'.
2025-05-13 13:58:08,676 - stpipe.Image2Pipeline - INFO - Prefetch for OTE reference file is 'N/A'.
2025-05-13 13:58:08,677 - stpipe.Image2Pipeline - INFO - Prefetch for PHOTOM reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits'.
2025-05-13 13:58:08,677 - stpipe.Image2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'.
2025-05-13 13:58:08,678 - stpipe.Image2Pipeline - INFO - Prefetch for SFLAT reference file is 'N/A'.
2025-05-13 13:58:08,678 - stpipe.Image2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'.
2025-05-13 13:58:08,678 - stpipe.Image2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is 'N/A'.
2025-05-13 13:58:08,679 - stpipe.Image2Pipeline - INFO - Starting calwebb_image2 ...
2025-05-13 13:58:08,679 - stpipe.Image2Pipeline - INFO - Processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00006_nis
2025-05-13 13:58:08,680 - stpipe.Image2Pipeline - INFO - Working on input /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00006_nis_rate.fits ...
2025-05-13 13:58:08,876 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00006_nis_image2pipeline.fits>,).
2025-05-13 13:58:09,032 - stpipe.Image2Pipeline.assign_wcs - INFO - Offsets from filteroffset file are 0.0, 0.0
2025-05-13 13:58:09,080 - stpipe.Image2Pipeline.assign_wcs - INFO - Update S_REGION to POLYGON ICRS 303.736869971 -26.793644806 303.777519392 -26.784559937 303.767216841 -26.748581519 303.726605504 -26.757648102
2025-05-13 13:58:09,081 - stpipe.Image2Pipeline.assign_wcs - INFO - assign_wcs updated S_REGION to POLYGON ICRS 303.736869971 -26.793644806 303.777519392 -26.784559937 303.767216841 -26.748581519 303.726605504 -26.757648102
2025-05-13 13:58:09,081 - stpipe.Image2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs
2025-05-13 13:58:09,126 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs done
2025-05-13 13:58:09,272 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00006_nis_image2pipeline.fits>,).
2025-05-13 13:58:09,354 - stpipe.Image2Pipeline.flat_field - INFO - Using FLAT reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits
2025-05-13 13:58:09,355 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type FFLAT
2025-05-13 13:58:09,355 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type SFLAT
2025-05-13 13:58:09,356 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type DFLAT
2025-05-13 13:58:09,512 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field done
2025-05-13 13:58:09,662 - stpipe.Image2Pipeline.photom - INFO - Step photom running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00006_nis_image2pipeline.fits>,).
2025-05-13 13:58:09,683 - stpipe.Image2Pipeline.photom - INFO - Using photom reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits
2025-05-13 13:58:09,683 - stpipe.Image2Pipeline.photom - INFO - Using area reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits
2025-05-13 13:58:09,716 - stpipe.Image2Pipeline.photom - INFO - Using instrument: NIRISS
2025-05-13 13:58:09,716 - stpipe.Image2Pipeline.photom - INFO - detector: NIS
2025-05-13 13:58:09,717 - stpipe.Image2Pipeline.photom - INFO - exp_type: NIS_IMAGE
2025-05-13 13:58:09,717 - stpipe.Image2Pipeline.photom - INFO - filter: CLEAR
2025-05-13 13:58:09,718 - stpipe.Image2Pipeline.photom - INFO - pupil: F150W
2025-05-13 13:58:09,742 - stpipe.Image2Pipeline.photom - INFO - Pixel area map copied to output.
2025-05-13 13:58:09,743 - stpipe.Image2Pipeline.photom - INFO - Values for PIXAR_SR and PIXAR_A2 obtained from AREA reference file.
2025-05-13 13:58:09,744 - stpipe.Image2Pipeline.photom - INFO - PHOTMJSR value: 0.256435
2025-05-13 13:58:09,793 - stpipe.Image2Pipeline.photom - INFO - Step photom done
2025-05-13 13:58:09,944 - stpipe.Image2Pipeline.resample - INFO - Step resample running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00006_nis_image2pipeline.fits>,).
2025-05-13 13:58:09,944 - stpipe.Image2Pipeline.resample - INFO - Step skipped.
2025-05-13 13:58:09,946 - stpipe.Image2Pipeline - INFO - Finished processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00006_nis
2025-05-13 13:58:09,947 - stpipe.Image2Pipeline - INFO - ... ending calwebb_image2
2025-05-13 13:58:09,947 - stpipe.Image2Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:58:10,113 - stpipe.Image2Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00006_nis_cal.fits
2025-05-13 13:58:10,113 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline done
2025-05-13 13:58:10,114 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:58:10,164 - stpipe - INFO - PARS-RESAMPLESTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-resamplestep_0001.asdf
2025-05-13 13:58:10,173 - stpipe - INFO - PARS-IMAGE2PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-image2pipeline_0002.asdf
2025-05-13 13:58:10,184 - stpipe.Image2Pipeline - INFO - Image2Pipeline instance created.
2025-05-13 13:58:10,185 - stpipe.Image2Pipeline.bkg_subtract - INFO - BackgroundStep instance created.
2025-05-13 13:58:10,186 - stpipe.Image2Pipeline.assign_wcs - INFO - AssignWcsStep instance created.
2025-05-13 13:58:10,187 - stpipe.Image2Pipeline.flat_field - INFO - FlatFieldStep instance created.
2025-05-13 13:58:10,188 - stpipe.Image2Pipeline.photom - INFO - PhotomStep instance created.
2025-05-13 13:58:10,189 - stpipe.Image2Pipeline.resample - INFO - ResampleStep instance created.
2025-05-13 13:58:10,340 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline running with args (np.str_('/home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00007_nis_rate.fits'),).
2025-05-13 13:58:10,348 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage2
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_bsub: False
steps:
bkg_subtract:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
save_combined_background: False
sigma: 3.0
maxiters: None
wfss_mmag_extract: None
wfss_maxiter: 5
wfss_rms_stop: 0.0
wfss_outlier_percent: 1.0
assign_wcs:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
sip_approx: True
sip_max_pix_error: 0.01
sip_degree: None
sip_max_inv_pix_error: 0.01
sip_inv_degree: None
sip_npoints: 12
slit_y_low: -0.55
slit_y_high: 0.55
flat_field:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_interpolated_flat: False
user_supplied_flat: None
inverse: False
photom:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
inverse: False
source_type: None
mrs_time_correction: True
resample:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
pixfrac: 1.0
kernel: square
fillval: NAN
weight_type: ivm
output_shape: None
crpix: None
crval: None
rotation: None
pixel_scale_ratio: 1.0
pixel_scale: None
output_wcs: ''
single: False
blendheaders: True
in_memory: True
2025-05-13 13:58:10,397 - stpipe.Image2Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00007_nis_rate.fits' reftypes = ['area', 'camera', 'collimator', 'dflat', 'disperser', 'distortion', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'photom', 'regions', 'sflat', 'specwcs', 'wavelengthrange']
2025-05-13 13:58:10,401 - stpipe.Image2Pipeline - INFO - Prefetch for AREA reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits'.
2025-05-13 13:58:10,401 - stpipe.Image2Pipeline - INFO - Prefetch for CAMERA reference file is 'N/A'.
2025-05-13 13:58:10,402 - stpipe.Image2Pipeline - INFO - Prefetch for COLLIMATOR reference file is 'N/A'.
2025-05-13 13:58:10,402 - stpipe.Image2Pipeline - INFO - Prefetch for DFLAT reference file is 'N/A'.
2025-05-13 13:58:10,403 - stpipe.Image2Pipeline - INFO - Prefetch for DISPERSER reference file is 'N/A'.
2025-05-13 13:58:10,403 - stpipe.Image2Pipeline - INFO - Prefetch for DISTORTION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_distortion_0047.asdf'.
2025-05-13 13:58:10,404 - stpipe.Image2Pipeline - INFO - Prefetch for FFLAT reference file is 'N/A'.
2025-05-13 13:58:10,404 - stpipe.Image2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_filteroffset_0006.asdf'.
2025-05-13 13:58:10,405 - stpipe.Image2Pipeline - INFO - Prefetch for FLAT reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits'.
2025-05-13 13:58:10,406 - stpipe.Image2Pipeline - INFO - Prefetch for FORE reference file is 'N/A'.
2025-05-13 13:58:10,406 - stpipe.Image2Pipeline - INFO - Prefetch for FPA reference file is 'N/A'.
2025-05-13 13:58:10,407 - stpipe.Image2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'.
2025-05-13 13:58:10,407 - stpipe.Image2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'.
2025-05-13 13:58:10,407 - stpipe.Image2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'.
2025-05-13 13:58:10,408 - stpipe.Image2Pipeline - INFO - Prefetch for MSA reference file is 'N/A'.
2025-05-13 13:58:10,408 - stpipe.Image2Pipeline - INFO - Prefetch for OTE reference file is 'N/A'.
2025-05-13 13:58:10,409 - stpipe.Image2Pipeline - INFO - Prefetch for PHOTOM reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits'.
2025-05-13 13:58:10,410 - stpipe.Image2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'.
2025-05-13 13:58:10,410 - stpipe.Image2Pipeline - INFO - Prefetch for SFLAT reference file is 'N/A'.
2025-05-13 13:58:10,410 - stpipe.Image2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'.
2025-05-13 13:58:10,411 - stpipe.Image2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is 'N/A'.
2025-05-13 13:58:10,411 - stpipe.Image2Pipeline - INFO - Starting calwebb_image2 ...
2025-05-13 13:58:10,412 - stpipe.Image2Pipeline - INFO - Processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00007_nis
2025-05-13 13:58:10,412 - stpipe.Image2Pipeline - INFO - Working on input /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00007_nis_rate.fits ...
2025-05-13 13:58:10,609 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00007_nis_image2pipeline.fits>,).
2025-05-13 13:58:10,767 - stpipe.Image2Pipeline.assign_wcs - INFO - Offsets from filteroffset file are 0.0, 0.0
2025-05-13 13:58:10,815 - stpipe.Image2Pipeline.assign_wcs - INFO - Update S_REGION to POLYGON ICRS 303.743091914 -26.796894290 303.783742050 -26.787807820 303.773437425 -26.751829807 303.732825375 -26.760897990
2025-05-13 13:58:10,815 - stpipe.Image2Pipeline.assign_wcs - INFO - assign_wcs updated S_REGION to POLYGON ICRS 303.743091914 -26.796894290 303.783742050 -26.787807820 303.773437425 -26.751829807 303.732825375 -26.760897990
2025-05-13 13:58:10,816 - stpipe.Image2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs
2025-05-13 13:58:10,860 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs done
2025-05-13 13:58:11,011 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00007_nis_image2pipeline.fits>,).
2025-05-13 13:58:11,093 - stpipe.Image2Pipeline.flat_field - INFO - Using FLAT reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits
2025-05-13 13:58:11,093 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type FFLAT
2025-05-13 13:58:11,094 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type SFLAT
2025-05-13 13:58:11,094 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type DFLAT
2025-05-13 13:58:11,252 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field done
2025-05-13 13:58:11,404 - stpipe.Image2Pipeline.photom - INFO - Step photom running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00007_nis_image2pipeline.fits>,).
2025-05-13 13:58:11,425 - stpipe.Image2Pipeline.photom - INFO - Using photom reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits
2025-05-13 13:58:11,425 - stpipe.Image2Pipeline.photom - INFO - Using area reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits
2025-05-13 13:58:11,458 - stpipe.Image2Pipeline.photom - INFO - Using instrument: NIRISS
2025-05-13 13:58:11,459 - stpipe.Image2Pipeline.photom - INFO - detector: NIS
2025-05-13 13:58:11,459 - stpipe.Image2Pipeline.photom - INFO - exp_type: NIS_IMAGE
2025-05-13 13:58:11,460 - stpipe.Image2Pipeline.photom - INFO - filter: CLEAR
2025-05-13 13:58:11,460 - stpipe.Image2Pipeline.photom - INFO - pupil: F150W
2025-05-13 13:58:11,484 - stpipe.Image2Pipeline.photom - INFO - Pixel area map copied to output.
2025-05-13 13:58:11,485 - stpipe.Image2Pipeline.photom - INFO - Values for PIXAR_SR and PIXAR_A2 obtained from AREA reference file.
2025-05-13 13:58:11,486 - stpipe.Image2Pipeline.photom - INFO - PHOTMJSR value: 0.256435
2025-05-13 13:58:11,534 - stpipe.Image2Pipeline.photom - INFO - Step photom done
2025-05-13 13:58:11,688 - stpipe.Image2Pipeline.resample - INFO - Step resample running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00007_nis_image2pipeline.fits>,).
2025-05-13 13:58:11,689 - stpipe.Image2Pipeline.resample - INFO - Step skipped.
2025-05-13 13:58:11,690 - stpipe.Image2Pipeline - INFO - Finished processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00007_nis
2025-05-13 13:58:11,691 - stpipe.Image2Pipeline - INFO - ... ending calwebb_image2
2025-05-13 13:58:11,691 - stpipe.Image2Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:58:11,867 - stpipe.Image2Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00007_nis_cal.fits
2025-05-13 13:58:11,868 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline done
2025-05-13 13:58:11,868 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:58:11,920 - stpipe - INFO - PARS-RESAMPLESTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-resamplestep_0001.asdf
2025-05-13 13:58:11,928 - stpipe - INFO - PARS-IMAGE2PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-image2pipeline_0002.asdf
2025-05-13 13:58:11,939 - stpipe.Image2Pipeline - INFO - Image2Pipeline instance created.
2025-05-13 13:58:11,940 - stpipe.Image2Pipeline.bkg_subtract - INFO - BackgroundStep instance created.
2025-05-13 13:58:11,941 - stpipe.Image2Pipeline.assign_wcs - INFO - AssignWcsStep instance created.
2025-05-13 13:58:11,942 - stpipe.Image2Pipeline.flat_field - INFO - FlatFieldStep instance created.
2025-05-13 13:58:11,943 - stpipe.Image2Pipeline.photom - INFO - PhotomStep instance created.
2025-05-13 13:58:11,944 - stpipe.Image2Pipeline.resample - INFO - ResampleStep instance created.
2025-05-13 13:58:12,094 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline running with args (np.str_('/home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00008_nis_rate.fits'),).
2025-05-13 13:58:12,102 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage2
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_bsub: False
steps:
bkg_subtract:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
save_combined_background: False
sigma: 3.0
maxiters: None
wfss_mmag_extract: None
wfss_maxiter: 5
wfss_rms_stop: 0.0
wfss_outlier_percent: 1.0
assign_wcs:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
sip_approx: True
sip_max_pix_error: 0.01
sip_degree: None
sip_max_inv_pix_error: 0.01
sip_inv_degree: None
sip_npoints: 12
slit_y_low: -0.55
slit_y_high: 0.55
flat_field:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_interpolated_flat: False
user_supplied_flat: None
inverse: False
photom:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
inverse: False
source_type: None
mrs_time_correction: True
resample:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
pixfrac: 1.0
kernel: square
fillval: NAN
weight_type: ivm
output_shape: None
crpix: None
crval: None
rotation: None
pixel_scale_ratio: 1.0
pixel_scale: None
output_wcs: ''
single: False
blendheaders: True
in_memory: True
2025-05-13 13:58:12,148 - stpipe.Image2Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00008_nis_rate.fits' reftypes = ['area', 'camera', 'collimator', 'dflat', 'disperser', 'distortion', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'photom', 'regions', 'sflat', 'specwcs', 'wavelengthrange']
2025-05-13 13:58:12,151 - stpipe.Image2Pipeline - INFO - Prefetch for AREA reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits'.
2025-05-13 13:58:12,152 - stpipe.Image2Pipeline - INFO - Prefetch for CAMERA reference file is 'N/A'.
2025-05-13 13:58:12,152 - stpipe.Image2Pipeline - INFO - Prefetch for COLLIMATOR reference file is 'N/A'.
2025-05-13 13:58:12,153 - stpipe.Image2Pipeline - INFO - Prefetch for DFLAT reference file is 'N/A'.
2025-05-13 13:58:12,153 - stpipe.Image2Pipeline - INFO - Prefetch for DISPERSER reference file is 'N/A'.
2025-05-13 13:58:12,154 - stpipe.Image2Pipeline - INFO - Prefetch for DISTORTION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_distortion_0047.asdf'.
2025-05-13 13:58:12,154 - stpipe.Image2Pipeline - INFO - Prefetch for FFLAT reference file is 'N/A'.
2025-05-13 13:58:12,154 - stpipe.Image2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_filteroffset_0006.asdf'.
2025-05-13 13:58:12,155 - stpipe.Image2Pipeline - INFO - Prefetch for FLAT reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits'.
2025-05-13 13:58:12,156 - stpipe.Image2Pipeline - INFO - Prefetch for FORE reference file is 'N/A'.
2025-05-13 13:58:12,156 - stpipe.Image2Pipeline - INFO - Prefetch for FPA reference file is 'N/A'.
2025-05-13 13:58:12,156 - stpipe.Image2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'.
2025-05-13 13:58:12,157 - stpipe.Image2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'.
2025-05-13 13:58:12,157 - stpipe.Image2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'.
2025-05-13 13:58:12,158 - stpipe.Image2Pipeline - INFO - Prefetch for MSA reference file is 'N/A'.
2025-05-13 13:58:12,158 - stpipe.Image2Pipeline - INFO - Prefetch for OTE reference file is 'N/A'.
2025-05-13 13:58:12,158 - stpipe.Image2Pipeline - INFO - Prefetch for PHOTOM reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits'.
2025-05-13 13:58:12,159 - stpipe.Image2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'.
2025-05-13 13:58:12,159 - stpipe.Image2Pipeline - INFO - Prefetch for SFLAT reference file is 'N/A'.
2025-05-13 13:58:12,160 - stpipe.Image2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'.
2025-05-13 13:58:12,160 - stpipe.Image2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is 'N/A'.
2025-05-13 13:58:12,161 - stpipe.Image2Pipeline - INFO - Starting calwebb_image2 ...
2025-05-13 13:58:12,161 - stpipe.Image2Pipeline - INFO - Processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00008_nis
2025-05-13 13:58:12,162 - stpipe.Image2Pipeline - INFO - Working on input /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00008_nis_rate.fits ...
2025-05-13 13:58:12,357 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00008_nis_image2pipeline.fits>,).
2025-05-13 13:58:12,513 - stpipe.Image2Pipeline.assign_wcs - INFO - Offsets from filteroffset file are 0.0, 0.0
2025-05-13 13:58:12,563 - stpipe.Image2Pipeline.assign_wcs - INFO - Update S_REGION to POLYGON ICRS 303.746732052 -26.791339516 303.787379875 -26.782251897 303.777074481 -26.746274176 303.736464737 -26.755343507
2025-05-13 13:58:12,564 - stpipe.Image2Pipeline.assign_wcs - INFO - assign_wcs updated S_REGION to POLYGON ICRS 303.746732052 -26.791339516 303.787379875 -26.782251897 303.777074481 -26.746274176 303.736464737 -26.755343507
2025-05-13 13:58:12,564 - stpipe.Image2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs
2025-05-13 13:58:12,609 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs done
2025-05-13 13:58:12,762 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00008_nis_image2pipeline.fits>,).
2025-05-13 13:58:12,843 - stpipe.Image2Pipeline.flat_field - INFO - Using FLAT reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits
2025-05-13 13:58:12,844 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type FFLAT
2025-05-13 13:58:12,844 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type SFLAT
2025-05-13 13:58:12,845 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type DFLAT
2025-05-13 13:58:13,004 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field done
2025-05-13 13:58:13,158 - stpipe.Image2Pipeline.photom - INFO - Step photom running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00008_nis_image2pipeline.fits>,).
2025-05-13 13:58:13,179 - stpipe.Image2Pipeline.photom - INFO - Using photom reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits
2025-05-13 13:58:13,179 - stpipe.Image2Pipeline.photom - INFO - Using area reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits
2025-05-13 13:58:13,212 - stpipe.Image2Pipeline.photom - INFO - Using instrument: NIRISS
2025-05-13 13:58:13,213 - stpipe.Image2Pipeline.photom - INFO - detector: NIS
2025-05-13 13:58:13,213 - stpipe.Image2Pipeline.photom - INFO - exp_type: NIS_IMAGE
2025-05-13 13:58:13,214 - stpipe.Image2Pipeline.photom - INFO - filter: CLEAR
2025-05-13 13:58:13,214 - stpipe.Image2Pipeline.photom - INFO - pupil: F150W
2025-05-13 13:58:13,238 - stpipe.Image2Pipeline.photom - INFO - Pixel area map copied to output.
2025-05-13 13:58:13,239 - stpipe.Image2Pipeline.photom - INFO - Values for PIXAR_SR and PIXAR_A2 obtained from AREA reference file.
2025-05-13 13:58:13,240 - stpipe.Image2Pipeline.photom - INFO - PHOTMJSR value: 0.256435
2025-05-13 13:58:13,289 - stpipe.Image2Pipeline.photom - INFO - Step photom done
2025-05-13 13:58:13,443 - stpipe.Image2Pipeline.resample - INFO - Step resample running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00008_nis_image2pipeline.fits>,).
2025-05-13 13:58:13,444 - stpipe.Image2Pipeline.resample - INFO - Step skipped.
2025-05-13 13:58:13,446 - stpipe.Image2Pipeline - INFO - Finished processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00008_nis
2025-05-13 13:58:13,446 - stpipe.Image2Pipeline - INFO - ... ending calwebb_image2
2025-05-13 13:58:13,447 - stpipe.Image2Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:58:13,625 - stpipe.Image2Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00008_nis_cal.fits
2025-05-13 13:58:13,625 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline done
2025-05-13 13:58:13,626 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:58:13,680 - stpipe - INFO - PARS-RESAMPLESTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-resamplestep_0001.asdf
2025-05-13 13:58:13,689 - stpipe - INFO - PARS-IMAGE2PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-image2pipeline_0002.asdf
2025-05-13 13:58:13,700 - stpipe.Image2Pipeline - INFO - Image2Pipeline instance created.
2025-05-13 13:58:13,701 - stpipe.Image2Pipeline.bkg_subtract - INFO - BackgroundStep instance created.
2025-05-13 13:58:13,703 - stpipe.Image2Pipeline.assign_wcs - INFO - AssignWcsStep instance created.
2025-05-13 13:58:13,704 - stpipe.Image2Pipeline.flat_field - INFO - FlatFieldStep instance created.
2025-05-13 13:58:13,705 - stpipe.Image2Pipeline.photom - INFO - PhotomStep instance created.
2025-05-13 13:58:13,706 - stpipe.Image2Pipeline.resample - INFO - ResampleStep instance created.
2025-05-13 13:58:13,860 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline running with args (np.str_('/home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00009_nis_rate.fits'),).
2025-05-13 13:58:13,868 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage2
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_bsub: False
steps:
bkg_subtract:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
save_combined_background: False
sigma: 3.0
maxiters: None
wfss_mmag_extract: None
wfss_maxiter: 5
wfss_rms_stop: 0.0
wfss_outlier_percent: 1.0
assign_wcs:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
sip_approx: True
sip_max_pix_error: 0.01
sip_degree: None
sip_max_inv_pix_error: 0.01
sip_inv_degree: None
sip_npoints: 12
slit_y_low: -0.55
slit_y_high: 0.55
flat_field:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_interpolated_flat: False
user_supplied_flat: None
inverse: False
photom:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
inverse: False
source_type: None
mrs_time_correction: True
resample:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
pixfrac: 1.0
kernel: square
fillval: NAN
weight_type: ivm
output_shape: None
crpix: None
crval: None
rotation: None
pixel_scale_ratio: 1.0
pixel_scale: None
output_wcs: ''
single: False
blendheaders: True
in_memory: True
2025-05-13 13:58:13,920 - stpipe.Image2Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00009_nis_rate.fits' reftypes = ['area', 'camera', 'collimator', 'dflat', 'disperser', 'distortion', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'photom', 'regions', 'sflat', 'specwcs', 'wavelengthrange']
2025-05-13 13:58:13,924 - stpipe.Image2Pipeline - INFO - Prefetch for AREA reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits'.
2025-05-13 13:58:13,924 - stpipe.Image2Pipeline - INFO - Prefetch for CAMERA reference file is 'N/A'.
2025-05-13 13:58:13,925 - stpipe.Image2Pipeline - INFO - Prefetch for COLLIMATOR reference file is 'N/A'.
2025-05-13 13:58:13,925 - stpipe.Image2Pipeline - INFO - Prefetch for DFLAT reference file is 'N/A'.
2025-05-13 13:58:13,925 - stpipe.Image2Pipeline - INFO - Prefetch for DISPERSER reference file is 'N/A'.
2025-05-13 13:58:13,926 - stpipe.Image2Pipeline - INFO - Prefetch for DISTORTION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_distortion_0047.asdf'.
2025-05-13 13:58:13,926 - stpipe.Image2Pipeline - INFO - Prefetch for FFLAT reference file is 'N/A'.
2025-05-13 13:58:13,926 - stpipe.Image2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_filteroffset_0006.asdf'.
2025-05-13 13:58:13,927 - stpipe.Image2Pipeline - INFO - Prefetch for FLAT reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits'.
2025-05-13 13:58:13,928 - stpipe.Image2Pipeline - INFO - Prefetch for FORE reference file is 'N/A'.
2025-05-13 13:58:13,928 - stpipe.Image2Pipeline - INFO - Prefetch for FPA reference file is 'N/A'.
2025-05-13 13:58:13,929 - stpipe.Image2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'.
2025-05-13 13:58:13,929 - stpipe.Image2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'.
2025-05-13 13:58:13,929 - stpipe.Image2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'.
2025-05-13 13:58:13,930 - stpipe.Image2Pipeline - INFO - Prefetch for MSA reference file is 'N/A'.
2025-05-13 13:58:13,930 - stpipe.Image2Pipeline - INFO - Prefetch for OTE reference file is 'N/A'.
2025-05-13 13:58:13,930 - stpipe.Image2Pipeline - INFO - Prefetch for PHOTOM reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits'.
2025-05-13 13:58:13,931 - stpipe.Image2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'.
2025-05-13 13:58:13,931 - stpipe.Image2Pipeline - INFO - Prefetch for SFLAT reference file is 'N/A'.
2025-05-13 13:58:13,931 - stpipe.Image2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'.
2025-05-13 13:58:13,932 - stpipe.Image2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is 'N/A'.
2025-05-13 13:58:13,932 - stpipe.Image2Pipeline - INFO - Starting calwebb_image2 ...
2025-05-13 13:58:13,933 - stpipe.Image2Pipeline - INFO - Processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00009_nis
2025-05-13 13:58:13,933 - stpipe.Image2Pipeline - INFO - Working on input /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00009_nis_rate.fits ...
2025-05-13 13:58:14,126 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00009_nis_image2pipeline.fits>,).
2025-05-13 13:58:14,283 - stpipe.Image2Pipeline.assign_wcs - INFO - Offsets from filteroffset file are 0.0, 0.0
2025-05-13 13:58:14,331 - stpipe.Image2Pipeline.assign_wcs - INFO - Update S_REGION to POLYGON ICRS 303.740509792 -26.788090693 303.781156927 -26.779004769 303.770853710 -26.743026618 303.730244653 -26.752094256
2025-05-13 13:58:14,332 - stpipe.Image2Pipeline.assign_wcs - INFO - assign_wcs updated S_REGION to POLYGON ICRS 303.740509792 -26.788090693 303.781156927 -26.779004769 303.770853710 -26.743026618 303.730244653 -26.752094256
2025-05-13 13:58:14,332 - stpipe.Image2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs
2025-05-13 13:58:14,376 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs done
2025-05-13 13:58:14,520 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00009_nis_image2pipeline.fits>,).
2025-05-13 13:58:14,603 - stpipe.Image2Pipeline.flat_field - INFO - Using FLAT reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits
2025-05-13 13:58:14,604 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type FFLAT
2025-05-13 13:58:14,604 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type SFLAT
2025-05-13 13:58:14,605 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type DFLAT
2025-05-13 13:58:14,762 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field done
2025-05-13 13:58:14,914 - stpipe.Image2Pipeline.photom - INFO - Step photom running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00009_nis_image2pipeline.fits>,).
2025-05-13 13:58:14,937 - stpipe.Image2Pipeline.photom - INFO - Using photom reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits
2025-05-13 13:58:14,938 - stpipe.Image2Pipeline.photom - INFO - Using area reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits
2025-05-13 13:58:14,971 - stpipe.Image2Pipeline.photom - INFO - Using instrument: NIRISS
2025-05-13 13:58:14,971 - stpipe.Image2Pipeline.photom - INFO - detector: NIS
2025-05-13 13:58:14,971 - stpipe.Image2Pipeline.photom - INFO - exp_type: NIS_IMAGE
2025-05-13 13:58:14,972 - stpipe.Image2Pipeline.photom - INFO - filter: CLEAR
2025-05-13 13:58:14,972 - stpipe.Image2Pipeline.photom - INFO - pupil: F150W
2025-05-13 13:58:14,997 - stpipe.Image2Pipeline.photom - INFO - Pixel area map copied to output.
2025-05-13 13:58:14,997 - stpipe.Image2Pipeline.photom - INFO - Values for PIXAR_SR and PIXAR_A2 obtained from AREA reference file.
2025-05-13 13:58:14,999 - stpipe.Image2Pipeline.photom - INFO - PHOTMJSR value: 0.256435
2025-05-13 13:58:15,047 - stpipe.Image2Pipeline.photom - INFO - Step photom done
2025-05-13 13:58:15,200 - stpipe.Image2Pipeline.resample - INFO - Step resample running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00009_nis_image2pipeline.fits>,).
2025-05-13 13:58:15,201 - stpipe.Image2Pipeline.resample - INFO - Step skipped.
2025-05-13 13:58:15,202 - stpipe.Image2Pipeline - INFO - Finished processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00009_nis
2025-05-13 13:58:15,203 - stpipe.Image2Pipeline - INFO - ... ending calwebb_image2
2025-05-13 13:58:15,204 - stpipe.Image2Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:58:15,381 - stpipe.Image2Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00009_nis_cal.fits
2025-05-13 13:58:15,381 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline done
2025-05-13 13:58:15,382 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:58:15,433 - stpipe - INFO - PARS-RESAMPLESTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-resamplestep_0001.asdf
2025-05-13 13:58:15,441 - stpipe - INFO - PARS-IMAGE2PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-image2pipeline_0002.asdf
2025-05-13 13:58:15,453 - stpipe.Image2Pipeline - INFO - Image2Pipeline instance created.
2025-05-13 13:58:15,454 - stpipe.Image2Pipeline.bkg_subtract - INFO - BackgroundStep instance created.
2025-05-13 13:58:15,455 - stpipe.Image2Pipeline.assign_wcs - INFO - AssignWcsStep instance created.
2025-05-13 13:58:15,456 - stpipe.Image2Pipeline.flat_field - INFO - FlatFieldStep instance created.
2025-05-13 13:58:15,457 - stpipe.Image2Pipeline.photom - INFO - PhotomStep instance created.
2025-05-13 13:58:15,458 - stpipe.Image2Pipeline.resample - INFO - ResampleStep instance created.
2025-05-13 13:58:15,616 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline running with args (np.str_('/home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00010_nis_rate.fits'),).
2025-05-13 13:58:15,623 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage2
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_bsub: False
steps:
bkg_subtract:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
save_combined_background: False
sigma: 3.0
maxiters: None
wfss_mmag_extract: None
wfss_maxiter: 5
wfss_rms_stop: 0.0
wfss_outlier_percent: 1.0
assign_wcs:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
sip_approx: True
sip_max_pix_error: 0.01
sip_degree: None
sip_max_inv_pix_error: 0.01
sip_inv_degree: None
sip_npoints: 12
slit_y_low: -0.55
slit_y_high: 0.55
flat_field:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_interpolated_flat: False
user_supplied_flat: None
inverse: False
photom:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
inverse: False
source_type: None
mrs_time_correction: True
resample:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
pixfrac: 1.0
kernel: square
fillval: NAN
weight_type: ivm
output_shape: None
crpix: None
crval: None
rotation: None
pixel_scale_ratio: 1.0
pixel_scale: None
output_wcs: ''
single: False
blendheaders: True
in_memory: True
2025-05-13 13:58:15,670 - stpipe.Image2Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00010_nis_rate.fits' reftypes = ['area', 'camera', 'collimator', 'dflat', 'disperser', 'distortion', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'photom', 'regions', 'sflat', 'specwcs', 'wavelengthrange']
2025-05-13 13:58:15,674 - stpipe.Image2Pipeline - INFO - Prefetch for AREA reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits'.
2025-05-13 13:58:15,674 - stpipe.Image2Pipeline - INFO - Prefetch for CAMERA reference file is 'N/A'.
2025-05-13 13:58:15,675 - stpipe.Image2Pipeline - INFO - Prefetch for COLLIMATOR reference file is 'N/A'.
2025-05-13 13:58:15,675 - stpipe.Image2Pipeline - INFO - Prefetch for DFLAT reference file is 'N/A'.
2025-05-13 13:58:15,675 - stpipe.Image2Pipeline - INFO - Prefetch for DISPERSER reference file is 'N/A'.
2025-05-13 13:58:15,676 - stpipe.Image2Pipeline - INFO - Prefetch for DISTORTION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_distortion_0047.asdf'.
2025-05-13 13:58:15,676 - stpipe.Image2Pipeline - INFO - Prefetch for FFLAT reference file is 'N/A'.
2025-05-13 13:58:15,676 - stpipe.Image2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_filteroffset_0006.asdf'.
2025-05-13 13:58:15,677 - stpipe.Image2Pipeline - INFO - Prefetch for FLAT reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits'.
2025-05-13 13:58:15,677 - stpipe.Image2Pipeline - INFO - Prefetch for FORE reference file is 'N/A'.
2025-05-13 13:58:15,677 - stpipe.Image2Pipeline - INFO - Prefetch for FPA reference file is 'N/A'.
2025-05-13 13:58:15,678 - stpipe.Image2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'.
2025-05-13 13:58:15,678 - stpipe.Image2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'.
2025-05-13 13:58:15,679 - stpipe.Image2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'.
2025-05-13 13:58:15,679 - stpipe.Image2Pipeline - INFO - Prefetch for MSA reference file is 'N/A'.
2025-05-13 13:58:15,679 - stpipe.Image2Pipeline - INFO - Prefetch for OTE reference file is 'N/A'.
2025-05-13 13:58:15,680 - stpipe.Image2Pipeline - INFO - Prefetch for PHOTOM reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits'.
2025-05-13 13:58:15,680 - stpipe.Image2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'.
2025-05-13 13:58:15,680 - stpipe.Image2Pipeline - INFO - Prefetch for SFLAT reference file is 'N/A'.
2025-05-13 13:58:15,681 - stpipe.Image2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'.
2025-05-13 13:58:15,681 - stpipe.Image2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is 'N/A'.
2025-05-13 13:58:15,682 - stpipe.Image2Pipeline - INFO - Starting calwebb_image2 ...
2025-05-13 13:58:15,682 - stpipe.Image2Pipeline - INFO - Processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00010_nis
2025-05-13 13:58:15,683 - stpipe.Image2Pipeline - INFO - Working on input /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00010_nis_rate.fits ...
2025-05-13 13:58:15,892 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00010_nis_image2pipeline.fits>,).
2025-05-13 13:58:16,048 - stpipe.Image2Pipeline.assign_wcs - INFO - Offsets from filteroffset file are 0.0, 0.0
2025-05-13 13:58:16,096 - stpipe.Image2Pipeline.assign_wcs - INFO - Update S_REGION to POLYGON ICRS 303.738690092 -26.790867684 303.779338389 -26.781782359 303.769035585 -26.745804057 303.728425368 -26.754871096
2025-05-13 13:58:16,098 - stpipe.Image2Pipeline.assign_wcs - INFO - assign_wcs updated S_REGION to POLYGON ICRS 303.738690092 -26.790867684 303.779338389 -26.781782359 303.769035585 -26.745804057 303.728425368 -26.754871096
2025-05-13 13:58:16,098 - stpipe.Image2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs
2025-05-13 13:58:16,142 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs done
2025-05-13 13:58:16,296 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00010_nis_image2pipeline.fits>,).
2025-05-13 13:58:16,378 - stpipe.Image2Pipeline.flat_field - INFO - Using FLAT reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits
2025-05-13 13:58:16,379 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type FFLAT
2025-05-13 13:58:16,380 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type SFLAT
2025-05-13 13:58:16,380 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type DFLAT
2025-05-13 13:58:16,538 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field done
2025-05-13 13:58:16,697 - stpipe.Image2Pipeline.photom - INFO - Step photom running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00010_nis_image2pipeline.fits>,).
2025-05-13 13:58:16,718 - stpipe.Image2Pipeline.photom - INFO - Using photom reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits
2025-05-13 13:58:16,719 - stpipe.Image2Pipeline.photom - INFO - Using area reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits
2025-05-13 13:58:16,752 - stpipe.Image2Pipeline.photom - INFO - Using instrument: NIRISS
2025-05-13 13:58:16,752 - stpipe.Image2Pipeline.photom - INFO - detector: NIS
2025-05-13 13:58:16,752 - stpipe.Image2Pipeline.photom - INFO - exp_type: NIS_IMAGE
2025-05-13 13:58:16,753 - stpipe.Image2Pipeline.photom - INFO - filter: CLEAR
2025-05-13 13:58:16,753 - stpipe.Image2Pipeline.photom - INFO - pupil: F150W
2025-05-13 13:58:16,778 - stpipe.Image2Pipeline.photom - INFO - Pixel area map copied to output.
2025-05-13 13:58:16,778 - stpipe.Image2Pipeline.photom - INFO - Values for PIXAR_SR and PIXAR_A2 obtained from AREA reference file.
2025-05-13 13:58:16,780 - stpipe.Image2Pipeline.photom - INFO - PHOTMJSR value: 0.256435
2025-05-13 13:58:16,829 - stpipe.Image2Pipeline.photom - INFO - Step photom done
2025-05-13 13:58:16,992 - stpipe.Image2Pipeline.resample - INFO - Step resample running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00010_nis_image2pipeline.fits>,).
2025-05-13 13:58:16,993 - stpipe.Image2Pipeline.resample - INFO - Step skipped.
2025-05-13 13:58:16,994 - stpipe.Image2Pipeline - INFO - Finished processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00010_nis
2025-05-13 13:58:16,995 - stpipe.Image2Pipeline - INFO - ... ending calwebb_image2
2025-05-13 13:58:16,996 - stpipe.Image2Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:58:17,169 - stpipe.Image2Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00010_nis_cal.fits
2025-05-13 13:58:17,170 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline done
2025-05-13 13:58:17,170 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:58:17,222 - stpipe - INFO - PARS-RESAMPLESTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-resamplestep_0001.asdf
2025-05-13 13:58:17,231 - stpipe - INFO - PARS-IMAGE2PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-image2pipeline_0002.asdf
2025-05-13 13:58:17,242 - stpipe.Image2Pipeline - INFO - Image2Pipeline instance created.
2025-05-13 13:58:17,243 - stpipe.Image2Pipeline.bkg_subtract - INFO - BackgroundStep instance created.
2025-05-13 13:58:17,244 - stpipe.Image2Pipeline.assign_wcs - INFO - AssignWcsStep instance created.
2025-05-13 13:58:17,245 - stpipe.Image2Pipeline.flat_field - INFO - FlatFieldStep instance created.
2025-05-13 13:58:17,247 - stpipe.Image2Pipeline.photom - INFO - PhotomStep instance created.
2025-05-13 13:58:17,248 - stpipe.Image2Pipeline.resample - INFO - ResampleStep instance created.
2025-05-13 13:58:17,408 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline running with args (np.str_('/home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00011_nis_rate.fits'),).
2025-05-13 13:58:17,416 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage2
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_bsub: False
steps:
bkg_subtract:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
save_combined_background: False
sigma: 3.0
maxiters: None
wfss_mmag_extract: None
wfss_maxiter: 5
wfss_rms_stop: 0.0
wfss_outlier_percent: 1.0
assign_wcs:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
sip_approx: True
sip_max_pix_error: 0.01
sip_degree: None
sip_max_inv_pix_error: 0.01
sip_inv_degree: None
sip_npoints: 12
slit_y_low: -0.55
slit_y_high: 0.55
flat_field:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_interpolated_flat: False
user_supplied_flat: None
inverse: False
photom:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
inverse: False
source_type: None
mrs_time_correction: True
resample:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
pixfrac: 1.0
kernel: square
fillval: NAN
weight_type: ivm
output_shape: None
crpix: None
crval: None
rotation: None
pixel_scale_ratio: 1.0
pixel_scale: None
output_wcs: ''
single: False
blendheaders: True
in_memory: True
2025-05-13 13:58:17,463 - stpipe.Image2Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00011_nis_rate.fits' reftypes = ['area', 'camera', 'collimator', 'dflat', 'disperser', 'distortion', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'photom', 'regions', 'sflat', 'specwcs', 'wavelengthrange']
2025-05-13 13:58:17,467 - stpipe.Image2Pipeline - INFO - Prefetch for AREA reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits'.
2025-05-13 13:58:17,467 - stpipe.Image2Pipeline - INFO - Prefetch for CAMERA reference file is 'N/A'.
2025-05-13 13:58:17,468 - stpipe.Image2Pipeline - INFO - Prefetch for COLLIMATOR reference file is 'N/A'.
2025-05-13 13:58:17,468 - stpipe.Image2Pipeline - INFO - Prefetch for DFLAT reference file is 'N/A'.
2025-05-13 13:58:17,469 - stpipe.Image2Pipeline - INFO - Prefetch for DISPERSER reference file is 'N/A'.
2025-05-13 13:58:17,469 - stpipe.Image2Pipeline - INFO - Prefetch for DISTORTION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_distortion_0047.asdf'.
2025-05-13 13:58:17,469 - stpipe.Image2Pipeline - INFO - Prefetch for FFLAT reference file is 'N/A'.
2025-05-13 13:58:17,470 - stpipe.Image2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_filteroffset_0006.asdf'.
2025-05-13 13:58:17,470 - stpipe.Image2Pipeline - INFO - Prefetch for FLAT reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits'.
2025-05-13 13:58:17,470 - stpipe.Image2Pipeline - INFO - Prefetch for FORE reference file is 'N/A'.
2025-05-13 13:58:17,471 - stpipe.Image2Pipeline - INFO - Prefetch for FPA reference file is 'N/A'.
2025-05-13 13:58:17,471 - stpipe.Image2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'.
2025-05-13 13:58:17,471 - stpipe.Image2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'.
2025-05-13 13:58:17,472 - stpipe.Image2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'.
2025-05-13 13:58:17,472 - stpipe.Image2Pipeline - INFO - Prefetch for MSA reference file is 'N/A'.
2025-05-13 13:58:17,472 - stpipe.Image2Pipeline - INFO - Prefetch for OTE reference file is 'N/A'.
2025-05-13 13:58:17,473 - stpipe.Image2Pipeline - INFO - Prefetch for PHOTOM reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits'.
2025-05-13 13:58:17,474 - stpipe.Image2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'.
2025-05-13 13:58:17,475 - stpipe.Image2Pipeline - INFO - Prefetch for SFLAT reference file is 'N/A'.
2025-05-13 13:58:17,475 - stpipe.Image2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'.
2025-05-13 13:58:17,475 - stpipe.Image2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is 'N/A'.
2025-05-13 13:58:17,476 - stpipe.Image2Pipeline - INFO - Starting calwebb_image2 ...
2025-05-13 13:58:17,476 - stpipe.Image2Pipeline - INFO - Processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00011_nis
2025-05-13 13:58:17,477 - stpipe.Image2Pipeline - INFO - Working on input /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00011_nis_rate.fits ...
2025-05-13 13:58:17,682 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00011_nis_image2pipeline.fits>,).
2025-05-13 13:58:17,841 - stpipe.Image2Pipeline.assign_wcs - INFO - Offsets from filteroffset file are 0.0, 0.0
2025-05-13 13:58:17,889 - stpipe.Image2Pipeline.assign_wcs - INFO - Update S_REGION to POLYGON ICRS 303.739981375 -26.795269201 303.780631171 -26.786183599 303.770327658 -26.750205367 303.729715946 -26.759272683
2025-05-13 13:58:17,890 - stpipe.Image2Pipeline.assign_wcs - INFO - assign_wcs updated S_REGION to POLYGON ICRS 303.739981375 -26.795269201 303.780631171 -26.786183599 303.770327658 -26.750205367 303.729715946 -26.759272683
2025-05-13 13:58:17,890 - stpipe.Image2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs
2025-05-13 13:58:17,935 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs done
2025-05-13 13:58:18,093 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00011_nis_image2pipeline.fits>,).
2025-05-13 13:58:18,175 - stpipe.Image2Pipeline.flat_field - INFO - Using FLAT reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits
2025-05-13 13:58:18,176 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type FFLAT
2025-05-13 13:58:18,176 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type SFLAT
2025-05-13 13:58:18,177 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type DFLAT
2025-05-13 13:58:18,337 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field done
2025-05-13 13:58:18,495 - stpipe.Image2Pipeline.photom - INFO - Step photom running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00011_nis_image2pipeline.fits>,).
2025-05-13 13:58:18,516 - stpipe.Image2Pipeline.photom - INFO - Using photom reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits
2025-05-13 13:58:18,516 - stpipe.Image2Pipeline.photom - INFO - Using area reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits
2025-05-13 13:58:18,550 - stpipe.Image2Pipeline.photom - INFO - Using instrument: NIRISS
2025-05-13 13:58:18,550 - stpipe.Image2Pipeline.photom - INFO - detector: NIS
2025-05-13 13:58:18,551 - stpipe.Image2Pipeline.photom - INFO - exp_type: NIS_IMAGE
2025-05-13 13:58:18,551 - stpipe.Image2Pipeline.photom - INFO - filter: CLEAR
2025-05-13 13:58:18,552 - stpipe.Image2Pipeline.photom - INFO - pupil: F150W
2025-05-13 13:58:18,576 - stpipe.Image2Pipeline.photom - INFO - Pixel area map copied to output.
2025-05-13 13:58:18,576 - stpipe.Image2Pipeline.photom - INFO - Values for PIXAR_SR and PIXAR_A2 obtained from AREA reference file.
2025-05-13 13:58:18,577 - stpipe.Image2Pipeline.photom - INFO - PHOTMJSR value: 0.256435
2025-05-13 13:58:18,626 - stpipe.Image2Pipeline.photom - INFO - Step photom done
2025-05-13 13:58:18,792 - stpipe.Image2Pipeline.resample - INFO - Step resample running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00011_nis_image2pipeline.fits>,).
2025-05-13 13:58:18,793 - stpipe.Image2Pipeline.resample - INFO - Step skipped.
2025-05-13 13:58:18,795 - stpipe.Image2Pipeline - INFO - Finished processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00011_nis
2025-05-13 13:58:18,795 - stpipe.Image2Pipeline - INFO - ... ending calwebb_image2
2025-05-13 13:58:18,796 - stpipe.Image2Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:58:19,092 - stpipe.Image2Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00011_nis_cal.fits
2025-05-13 13:58:19,092 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline done
2025-05-13 13:58:19,093 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:58:19,144 - stpipe - INFO - PARS-RESAMPLESTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-resamplestep_0001.asdf
2025-05-13 13:58:19,153 - stpipe - INFO - PARS-IMAGE2PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-image2pipeline_0002.asdf
2025-05-13 13:58:19,163 - stpipe.Image2Pipeline - INFO - Image2Pipeline instance created.
2025-05-13 13:58:19,164 - stpipe.Image2Pipeline.bkg_subtract - INFO - BackgroundStep instance created.
2025-05-13 13:58:19,166 - stpipe.Image2Pipeline.assign_wcs - INFO - AssignWcsStep instance created.
2025-05-13 13:58:19,167 - stpipe.Image2Pipeline.flat_field - INFO - FlatFieldStep instance created.
2025-05-13 13:58:19,167 - stpipe.Image2Pipeline.photom - INFO - PhotomStep instance created.
2025-05-13 13:58:19,168 - stpipe.Image2Pipeline.resample - INFO - ResampleStep instance created.
2025-05-13 13:58:19,329 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline running with args (np.str_('/home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00012_nis_rate.fits'),).
2025-05-13 13:58:19,336 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage2
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_bsub: False
steps:
bkg_subtract:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
save_combined_background: False
sigma: 3.0
maxiters: None
wfss_mmag_extract: None
wfss_maxiter: 5
wfss_rms_stop: 0.0
wfss_outlier_percent: 1.0
assign_wcs:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
sip_approx: True
sip_max_pix_error: 0.01
sip_degree: None
sip_max_inv_pix_error: 0.01
sip_inv_degree: None
sip_npoints: 12
slit_y_low: -0.55
slit_y_high: 0.55
flat_field:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_interpolated_flat: False
user_supplied_flat: None
inverse: False
photom:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
inverse: False
source_type: None
mrs_time_correction: True
resample:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
pixfrac: 1.0
kernel: square
fillval: NAN
weight_type: ivm
output_shape: None
crpix: None
crval: None
rotation: None
pixel_scale_ratio: 1.0
pixel_scale: None
output_wcs: ''
single: False
blendheaders: True
in_memory: True
2025-05-13 13:58:19,381 - stpipe.Image2Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00012_nis_rate.fits' reftypes = ['area', 'camera', 'collimator', 'dflat', 'disperser', 'distortion', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'photom', 'regions', 'sflat', 'specwcs', 'wavelengthrange']
2025-05-13 13:58:19,385 - stpipe.Image2Pipeline - INFO - Prefetch for AREA reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits'.
2025-05-13 13:58:19,386 - stpipe.Image2Pipeline - INFO - Prefetch for CAMERA reference file is 'N/A'.
2025-05-13 13:58:19,386 - stpipe.Image2Pipeline - INFO - Prefetch for COLLIMATOR reference file is 'N/A'.
2025-05-13 13:58:19,386 - stpipe.Image2Pipeline - INFO - Prefetch for DFLAT reference file is 'N/A'.
2025-05-13 13:58:19,387 - stpipe.Image2Pipeline - INFO - Prefetch for DISPERSER reference file is 'N/A'.
2025-05-13 13:58:19,387 - stpipe.Image2Pipeline - INFO - Prefetch for DISTORTION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_distortion_0047.asdf'.
2025-05-13 13:58:19,388 - stpipe.Image2Pipeline - INFO - Prefetch for FFLAT reference file is 'N/A'.
2025-05-13 13:58:19,388 - stpipe.Image2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_filteroffset_0006.asdf'.
2025-05-13 13:58:19,389 - stpipe.Image2Pipeline - INFO - Prefetch for FLAT reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits'.
2025-05-13 13:58:19,389 - stpipe.Image2Pipeline - INFO - Prefetch for FORE reference file is 'N/A'.
2025-05-13 13:58:19,390 - stpipe.Image2Pipeline - INFO - Prefetch for FPA reference file is 'N/A'.
2025-05-13 13:58:19,390 - stpipe.Image2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'.
2025-05-13 13:58:19,390 - stpipe.Image2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'.
2025-05-13 13:58:19,391 - stpipe.Image2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'.
2025-05-13 13:58:19,391 - stpipe.Image2Pipeline - INFO - Prefetch for MSA reference file is 'N/A'.
2025-05-13 13:58:19,391 - stpipe.Image2Pipeline - INFO - Prefetch for OTE reference file is 'N/A'.
2025-05-13 13:58:19,392 - stpipe.Image2Pipeline - INFO - Prefetch for PHOTOM reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits'.
2025-05-13 13:58:19,392 - stpipe.Image2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'.
2025-05-13 13:58:19,393 - stpipe.Image2Pipeline - INFO - Prefetch for SFLAT reference file is 'N/A'.
2025-05-13 13:58:19,393 - stpipe.Image2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'.
2025-05-13 13:58:19,394 - stpipe.Image2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is 'N/A'.
2025-05-13 13:58:19,395 - stpipe.Image2Pipeline - INFO - Starting calwebb_image2 ...
2025-05-13 13:58:19,395 - stpipe.Image2Pipeline - INFO - Processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00012_nis
2025-05-13 13:58:19,396 - stpipe.Image2Pipeline - INFO - Working on input /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00012_nis_rate.fits ...
2025-05-13 13:58:19,595 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00012_nis_image2pipeline.fits>,).
2025-05-13 13:58:19,755 - stpipe.Image2Pipeline.assign_wcs - INFO - Offsets from filteroffset file are 0.0, 0.0
2025-05-13 13:58:19,803 - stpipe.Image2Pipeline.assign_wcs - INFO - Update S_REGION to POLYGON ICRS 303.744912311 -26.794116664 303.785561280 -26.785029588 303.775256236 -26.749051730 303.734645349 -26.758120518
2025-05-13 13:58:19,804 - stpipe.Image2Pipeline.assign_wcs - INFO - assign_wcs updated S_REGION to POLYGON ICRS 303.744912311 -26.794116664 303.785561280 -26.785029588 303.775256236 -26.749051730 303.734645349 -26.758120518
2025-05-13 13:58:19,805 - stpipe.Image2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs
2025-05-13 13:58:19,850 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs done
2025-05-13 13:58:20,015 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00012_nis_image2pipeline.fits>,).
2025-05-13 13:58:20,104 - stpipe.Image2Pipeline.flat_field - INFO - Using FLAT reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits
2025-05-13 13:58:20,104 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type FFLAT
2025-05-13 13:58:20,105 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type SFLAT
2025-05-13 13:58:20,105 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type DFLAT
2025-05-13 13:58:20,295 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field done
2025-05-13 13:58:20,454 - stpipe.Image2Pipeline.photom - INFO - Step photom running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00012_nis_image2pipeline.fits>,).
2025-05-13 13:58:20,475 - stpipe.Image2Pipeline.photom - INFO - Using photom reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits
2025-05-13 13:58:20,476 - stpipe.Image2Pipeline.photom - INFO - Using area reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits
2025-05-13 13:58:20,508 - stpipe.Image2Pipeline.photom - INFO - Using instrument: NIRISS
2025-05-13 13:58:20,509 - stpipe.Image2Pipeline.photom - INFO - detector: NIS
2025-05-13 13:58:20,510 - stpipe.Image2Pipeline.photom - INFO - exp_type: NIS_IMAGE
2025-05-13 13:58:20,510 - stpipe.Image2Pipeline.photom - INFO - filter: CLEAR
2025-05-13 13:58:20,511 - stpipe.Image2Pipeline.photom - INFO - pupil: F150W
2025-05-13 13:58:20,535 - stpipe.Image2Pipeline.photom - INFO - Pixel area map copied to output.
2025-05-13 13:58:20,535 - stpipe.Image2Pipeline.photom - INFO - Values for PIXAR_SR and PIXAR_A2 obtained from AREA reference file.
2025-05-13 13:58:20,537 - stpipe.Image2Pipeline.photom - INFO - PHOTMJSR value: 0.256435
2025-05-13 13:58:20,585 - stpipe.Image2Pipeline.photom - INFO - Step photom done
2025-05-13 13:58:20,748 - stpipe.Image2Pipeline.resample - INFO - Step resample running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00012_nis_image2pipeline.fits>,).
2025-05-13 13:58:20,748 - stpipe.Image2Pipeline.resample - INFO - Step skipped.
2025-05-13 13:58:20,750 - stpipe.Image2Pipeline - INFO - Finished processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00012_nis
2025-05-13 13:58:20,751 - stpipe.Image2Pipeline - INFO - ... ending calwebb_image2
2025-05-13 13:58:20,751 - stpipe.Image2Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:58:20,930 - stpipe.Image2Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00012_nis_cal.fits
2025-05-13 13:58:20,931 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline done
2025-05-13 13:58:20,932 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:58:20,993 - stpipe - INFO - PARS-RESAMPLESTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-resamplestep_0001.asdf
2025-05-13 13:58:21,002 - stpipe - INFO - PARS-IMAGE2PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-image2pipeline_0002.asdf
2025-05-13 13:58:21,013 - stpipe.Image2Pipeline - INFO - Image2Pipeline instance created.
2025-05-13 13:58:21,014 - stpipe.Image2Pipeline.bkg_subtract - INFO - BackgroundStep instance created.
2025-05-13 13:58:21,015 - stpipe.Image2Pipeline.assign_wcs - INFO - AssignWcsStep instance created.
2025-05-13 13:58:21,016 - stpipe.Image2Pipeline.flat_field - INFO - FlatFieldStep instance created.
2025-05-13 13:58:21,017 - stpipe.Image2Pipeline.photom - INFO - PhotomStep instance created.
2025-05-13 13:58:21,018 - stpipe.Image2Pipeline.resample - INFO - ResampleStep instance created.
2025-05-13 13:58:21,180 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline running with args (np.str_('/home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00013_nis_rate.fits'),).
2025-05-13 13:58:21,188 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage2
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_bsub: False
steps:
bkg_subtract:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
save_combined_background: False
sigma: 3.0
maxiters: None
wfss_mmag_extract: None
wfss_maxiter: 5
wfss_rms_stop: 0.0
wfss_outlier_percent: 1.0
assign_wcs:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
sip_approx: True
sip_max_pix_error: 0.01
sip_degree: None
sip_max_inv_pix_error: 0.01
sip_inv_degree: None
sip_npoints: 12
slit_y_low: -0.55
slit_y_high: 0.55
flat_field:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_interpolated_flat: False
user_supplied_flat: None
inverse: False
photom:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
inverse: False
source_type: None
mrs_time_correction: True
resample:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
pixfrac: 1.0
kernel: square
fillval: NAN
weight_type: ivm
output_shape: None
crpix: None
crval: None
rotation: None
pixel_scale_ratio: 1.0
pixel_scale: None
output_wcs: ''
single: False
blendheaders: True
in_memory: True
2025-05-13 13:58:21,233 - stpipe.Image2Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00013_nis_rate.fits' reftypes = ['area', 'camera', 'collimator', 'dflat', 'disperser', 'distortion', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'photom', 'regions', 'sflat', 'specwcs', 'wavelengthrange']
2025-05-13 13:58:21,237 - stpipe.Image2Pipeline - INFO - Prefetch for AREA reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits'.
2025-05-13 13:58:21,238 - stpipe.Image2Pipeline - INFO - Prefetch for CAMERA reference file is 'N/A'.
2025-05-13 13:58:21,238 - stpipe.Image2Pipeline - INFO - Prefetch for COLLIMATOR reference file is 'N/A'.
2025-05-13 13:58:21,238 - stpipe.Image2Pipeline - INFO - Prefetch for DFLAT reference file is 'N/A'.
2025-05-13 13:58:21,239 - stpipe.Image2Pipeline - INFO - Prefetch for DISPERSER reference file is 'N/A'.
2025-05-13 13:58:21,239 - stpipe.Image2Pipeline - INFO - Prefetch for DISTORTION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_distortion_0047.asdf'.
2025-05-13 13:58:21,240 - stpipe.Image2Pipeline - INFO - Prefetch for FFLAT reference file is 'N/A'.
2025-05-13 13:58:21,240 - stpipe.Image2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_filteroffset_0006.asdf'.
2025-05-13 13:58:21,240 - stpipe.Image2Pipeline - INFO - Prefetch for FLAT reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits'.
2025-05-13 13:58:21,241 - stpipe.Image2Pipeline - INFO - Prefetch for FORE reference file is 'N/A'.
2025-05-13 13:58:21,241 - stpipe.Image2Pipeline - INFO - Prefetch for FPA reference file is 'N/A'.
2025-05-13 13:58:21,242 - stpipe.Image2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'.
2025-05-13 13:58:21,242 - stpipe.Image2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'.
2025-05-13 13:58:21,243 - stpipe.Image2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'.
2025-05-13 13:58:21,243 - stpipe.Image2Pipeline - INFO - Prefetch for MSA reference file is 'N/A'.
2025-05-13 13:58:21,244 - stpipe.Image2Pipeline - INFO - Prefetch for OTE reference file is 'N/A'.
2025-05-13 13:58:21,244 - stpipe.Image2Pipeline - INFO - Prefetch for PHOTOM reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits'.
2025-05-13 13:58:21,244 - stpipe.Image2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'.
2025-05-13 13:58:21,245 - stpipe.Image2Pipeline - INFO - Prefetch for SFLAT reference file is 'N/A'.
2025-05-13 13:58:21,245 - stpipe.Image2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'.
2025-05-13 13:58:21,246 - stpipe.Image2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is 'N/A'.
2025-05-13 13:58:21,246 - stpipe.Image2Pipeline - INFO - Starting calwebb_image2 ...
2025-05-13 13:58:21,247 - stpipe.Image2Pipeline - INFO - Processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00013_nis
2025-05-13 13:58:21,247 - stpipe.Image2Pipeline - INFO - Working on input /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00013_nis_rate.fits ...
2025-05-13 13:58:21,455 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00013_nis_image2pipeline.fits>,).
2025-05-13 13:58:21,611 - stpipe.Image2Pipeline.assign_wcs - INFO - Offsets from filteroffset file are 0.0, 0.0
2025-05-13 13:58:21,659 - stpipe.Image2Pipeline.assign_wcs - INFO - Update S_REGION to POLYGON ICRS 303.743620923 -26.789715132 303.784268407 -26.780628381 303.773964124 -26.744650441 303.733354719 -26.753718904
2025-05-13 13:58:21,660 - stpipe.Image2Pipeline.assign_wcs - INFO - assign_wcs updated S_REGION to POLYGON ICRS 303.743620923 -26.789715132 303.784268407 -26.780628381 303.773964124 -26.744650441 303.733354719 -26.753718904
2025-05-13 13:58:21,660 - stpipe.Image2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs
2025-05-13 13:58:21,705 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs done
2025-05-13 13:58:21,871 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00013_nis_image2pipeline.fits>,).
2025-05-13 13:58:21,953 - stpipe.Image2Pipeline.flat_field - INFO - Using FLAT reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits
2025-05-13 13:58:21,954 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type FFLAT
2025-05-13 13:58:21,954 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type SFLAT
2025-05-13 13:58:21,955 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type DFLAT
2025-05-13 13:58:22,128 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field done
2025-05-13 13:58:22,287 - stpipe.Image2Pipeline.photom - INFO - Step photom running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00013_nis_image2pipeline.fits>,).
2025-05-13 13:58:22,309 - stpipe.Image2Pipeline.photom - INFO - Using photom reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits
2025-05-13 13:58:22,309 - stpipe.Image2Pipeline.photom - INFO - Using area reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits
2025-05-13 13:58:22,342 - stpipe.Image2Pipeline.photom - INFO - Using instrument: NIRISS
2025-05-13 13:58:22,343 - stpipe.Image2Pipeline.photom - INFO - detector: NIS
2025-05-13 13:58:22,343 - stpipe.Image2Pipeline.photom - INFO - exp_type: NIS_IMAGE
2025-05-13 13:58:22,343 - stpipe.Image2Pipeline.photom - INFO - filter: CLEAR
2025-05-13 13:58:22,344 - stpipe.Image2Pipeline.photom - INFO - pupil: F150W
2025-05-13 13:58:22,368 - stpipe.Image2Pipeline.photom - INFO - Pixel area map copied to output.
2025-05-13 13:58:22,368 - stpipe.Image2Pipeline.photom - INFO - Values for PIXAR_SR and PIXAR_A2 obtained from AREA reference file.
2025-05-13 13:58:22,370 - stpipe.Image2Pipeline.photom - INFO - PHOTMJSR value: 0.256435
2025-05-13 13:58:22,418 - stpipe.Image2Pipeline.photom - INFO - Step photom done
2025-05-13 13:58:22,579 - stpipe.Image2Pipeline.resample - INFO - Step resample running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00013_nis_image2pipeline.fits>,).
2025-05-13 13:58:22,579 - stpipe.Image2Pipeline.resample - INFO - Step skipped.
2025-05-13 13:58:22,581 - stpipe.Image2Pipeline - INFO - Finished processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00013_nis
2025-05-13 13:58:22,581 - stpipe.Image2Pipeline - INFO - ... ending calwebb_image2
2025-05-13 13:58:22,582 - stpipe.Image2Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:58:22,755 - stpipe.Image2Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00013_nis_cal.fits
2025-05-13 13:58:22,756 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline done
2025-05-13 13:58:22,756 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:58:22,807 - stpipe - INFO - PARS-RESAMPLESTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-resamplestep_0001.asdf
2025-05-13 13:58:22,816 - stpipe - INFO - PARS-IMAGE2PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-image2pipeline_0002.asdf
2025-05-13 13:58:22,826 - stpipe.Image2Pipeline - INFO - Image2Pipeline instance created.
2025-05-13 13:58:22,827 - stpipe.Image2Pipeline.bkg_subtract - INFO - BackgroundStep instance created.
2025-05-13 13:58:22,829 - stpipe.Image2Pipeline.assign_wcs - INFO - AssignWcsStep instance created.
2025-05-13 13:58:22,829 - stpipe.Image2Pipeline.flat_field - INFO - FlatFieldStep instance created.
2025-05-13 13:58:22,830 - stpipe.Image2Pipeline.photom - INFO - PhotomStep instance created.
2025-05-13 13:58:22,831 - stpipe.Image2Pipeline.resample - INFO - ResampleStep instance created.
2025-05-13 13:58:22,991 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline running with args (np.str_('/home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00014_nis_rate.fits'),).
2025-05-13 13:58:22,999 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage2
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_bsub: False
steps:
bkg_subtract:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
save_combined_background: False
sigma: 3.0
maxiters: None
wfss_mmag_extract: None
wfss_maxiter: 5
wfss_rms_stop: 0.0
wfss_outlier_percent: 1.0
assign_wcs:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
sip_approx: True
sip_max_pix_error: 0.01
sip_degree: None
sip_max_inv_pix_error: 0.01
sip_inv_degree: None
sip_npoints: 12
slit_y_low: -0.55
slit_y_high: 0.55
flat_field:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_interpolated_flat: False
user_supplied_flat: None
inverse: False
photom:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
inverse: False
source_type: None
mrs_time_correction: True
resample:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
pixfrac: 1.0
kernel: square
fillval: NAN
weight_type: ivm
output_shape: None
crpix: None
crval: None
rotation: None
pixel_scale_ratio: 1.0
pixel_scale: None
output_wcs: ''
single: False
blendheaders: True
in_memory: True
2025-05-13 13:58:23,044 - stpipe.Image2Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00014_nis_rate.fits' reftypes = ['area', 'camera', 'collimator', 'dflat', 'disperser', 'distortion', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'photom', 'regions', 'sflat', 'specwcs', 'wavelengthrange']
2025-05-13 13:58:23,048 - stpipe.Image2Pipeline - INFO - Prefetch for AREA reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits'.
2025-05-13 13:58:23,049 - stpipe.Image2Pipeline - INFO - Prefetch for CAMERA reference file is 'N/A'.
2025-05-13 13:58:23,049 - stpipe.Image2Pipeline - INFO - Prefetch for COLLIMATOR reference file is 'N/A'.
2025-05-13 13:58:23,049 - stpipe.Image2Pipeline - INFO - Prefetch for DFLAT reference file is 'N/A'.
2025-05-13 13:58:23,050 - stpipe.Image2Pipeline - INFO - Prefetch for DISPERSER reference file is 'N/A'.
2025-05-13 13:58:23,050 - stpipe.Image2Pipeline - INFO - Prefetch for DISTORTION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_distortion_0047.asdf'.
2025-05-13 13:58:23,051 - stpipe.Image2Pipeline - INFO - Prefetch for FFLAT reference file is 'N/A'.
2025-05-13 13:58:23,051 - stpipe.Image2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_filteroffset_0006.asdf'.
2025-05-13 13:58:23,052 - stpipe.Image2Pipeline - INFO - Prefetch for FLAT reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits'.
2025-05-13 13:58:23,053 - stpipe.Image2Pipeline - INFO - Prefetch for FORE reference file is 'N/A'.
2025-05-13 13:58:23,053 - stpipe.Image2Pipeline - INFO - Prefetch for FPA reference file is 'N/A'.
2025-05-13 13:58:23,053 - stpipe.Image2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'.
2025-05-13 13:58:23,054 - stpipe.Image2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'.
2025-05-13 13:58:23,054 - stpipe.Image2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'.
2025-05-13 13:58:23,055 - stpipe.Image2Pipeline - INFO - Prefetch for MSA reference file is 'N/A'.
2025-05-13 13:58:23,055 - stpipe.Image2Pipeline - INFO - Prefetch for OTE reference file is 'N/A'.
2025-05-13 13:58:23,055 - stpipe.Image2Pipeline - INFO - Prefetch for PHOTOM reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits'.
2025-05-13 13:58:23,057 - stpipe.Image2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'.
2025-05-13 13:58:23,057 - stpipe.Image2Pipeline - INFO - Prefetch for SFLAT reference file is 'N/A'.
2025-05-13 13:58:23,057 - stpipe.Image2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'.
2025-05-13 13:58:23,058 - stpipe.Image2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is 'N/A'.
2025-05-13 13:58:23,059 - stpipe.Image2Pipeline - INFO - Starting calwebb_image2 ...
2025-05-13 13:58:23,059 - stpipe.Image2Pipeline - INFO - Processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00014_nis
2025-05-13 13:58:23,059 - stpipe.Image2Pipeline - INFO - Working on input /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00014_nis_rate.fits ...
2025-05-13 13:58:23,265 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00014_nis_image2pipeline.fits>,).
2025-05-13 13:58:23,422 - stpipe.Image2Pipeline.assign_wcs - INFO - Offsets from filteroffset file are 0.0, 0.0
2025-05-13 13:58:23,470 - stpipe.Image2Pipeline.assign_wcs - INFO - Update S_REGION to POLYGON ICRS 303.741155475 -26.790291476 303.781803358 -26.781205412 303.771499785 -26.745227297 303.730889982 -26.754295075
2025-05-13 13:58:23,471 - stpipe.Image2Pipeline.assign_wcs - INFO - assign_wcs updated S_REGION to POLYGON ICRS 303.741155475 -26.790291476 303.781803358 -26.781205412 303.771499785 -26.745227297 303.730889982 -26.754295075
2025-05-13 13:58:23,472 - stpipe.Image2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs
2025-05-13 13:58:23,516 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs done
2025-05-13 13:58:23,679 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00014_nis_image2pipeline.fits>,).
2025-05-13 13:58:23,761 - stpipe.Image2Pipeline.flat_field - INFO - Using FLAT reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits
2025-05-13 13:58:23,762 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type FFLAT
2025-05-13 13:58:23,763 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type SFLAT
2025-05-13 13:58:23,763 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type DFLAT
2025-05-13 13:58:23,944 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field done
2025-05-13 13:58:24,113 - stpipe.Image2Pipeline.photom - INFO - Step photom running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00014_nis_image2pipeline.fits>,).
2025-05-13 13:58:24,135 - stpipe.Image2Pipeline.photom - INFO - Using photom reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits
2025-05-13 13:58:24,135 - stpipe.Image2Pipeline.photom - INFO - Using area reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits
2025-05-13 13:58:24,168 - stpipe.Image2Pipeline.photom - INFO - Using instrument: NIRISS
2025-05-13 13:58:24,168 - stpipe.Image2Pipeline.photom - INFO - detector: NIS
2025-05-13 13:58:24,169 - stpipe.Image2Pipeline.photom - INFO - exp_type: NIS_IMAGE
2025-05-13 13:58:24,169 - stpipe.Image2Pipeline.photom - INFO - filter: CLEAR
2025-05-13 13:58:24,169 - stpipe.Image2Pipeline.photom - INFO - pupil: F150W
2025-05-13 13:58:24,193 - stpipe.Image2Pipeline.photom - INFO - Pixel area map copied to output.
2025-05-13 13:58:24,194 - stpipe.Image2Pipeline.photom - INFO - Values for PIXAR_SR and PIXAR_A2 obtained from AREA reference file.
2025-05-13 13:58:24,195 - stpipe.Image2Pipeline.photom - INFO - PHOTMJSR value: 0.256435
2025-05-13 13:58:24,243 - stpipe.Image2Pipeline.photom - INFO - Step photom done
2025-05-13 13:58:24,404 - stpipe.Image2Pipeline.resample - INFO - Step resample running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00014_nis_image2pipeline.fits>,).
2025-05-13 13:58:24,405 - stpipe.Image2Pipeline.resample - INFO - Step skipped.
2025-05-13 13:58:24,407 - stpipe.Image2Pipeline - INFO - Finished processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00014_nis
2025-05-13 13:58:24,407 - stpipe.Image2Pipeline - INFO - ... ending calwebb_image2
2025-05-13 13:58:24,408 - stpipe.Image2Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:58:24,580 - stpipe.Image2Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00014_nis_cal.fits
2025-05-13 13:58:24,581 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline done
2025-05-13 13:58:24,582 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:58:24,632 - stpipe - INFO - PARS-RESAMPLESTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-resamplestep_0001.asdf
2025-05-13 13:58:24,640 - stpipe - INFO - PARS-IMAGE2PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-image2pipeline_0002.asdf
2025-05-13 13:58:24,652 - stpipe.Image2Pipeline - INFO - Image2Pipeline instance created.
2025-05-13 13:58:24,653 - stpipe.Image2Pipeline.bkg_subtract - INFO - BackgroundStep instance created.
2025-05-13 13:58:24,654 - stpipe.Image2Pipeline.assign_wcs - INFO - AssignWcsStep instance created.
2025-05-13 13:58:24,655 - stpipe.Image2Pipeline.flat_field - INFO - FlatFieldStep instance created.
2025-05-13 13:58:24,656 - stpipe.Image2Pipeline.photom - INFO - PhotomStep instance created.
2025-05-13 13:58:24,658 - stpipe.Image2Pipeline.resample - INFO - ResampleStep instance created.
2025-05-13 13:58:24,816 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline running with args (np.str_('/home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00015_nis_rate.fits'),).
2025-05-13 13:58:24,824 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage2
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_bsub: False
steps:
bkg_subtract:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
save_combined_background: False
sigma: 3.0
maxiters: None
wfss_mmag_extract: None
wfss_maxiter: 5
wfss_rms_stop: 0.0
wfss_outlier_percent: 1.0
assign_wcs:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
sip_approx: True
sip_max_pix_error: 0.01
sip_degree: None
sip_max_inv_pix_error: 0.01
sip_inv_degree: None
sip_npoints: 12
slit_y_low: -0.55
slit_y_high: 0.55
flat_field:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_interpolated_flat: False
user_supplied_flat: None
inverse: False
photom:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
inverse: False
source_type: None
mrs_time_correction: True
resample:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
pixfrac: 1.0
kernel: square
fillval: NAN
weight_type: ivm
output_shape: None
crpix: None
crval: None
rotation: None
pixel_scale_ratio: 1.0
pixel_scale: None
output_wcs: ''
single: False
blendheaders: True
in_memory: True
2025-05-13 13:58:24,869 - stpipe.Image2Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00015_nis_rate.fits' reftypes = ['area', 'camera', 'collimator', 'dflat', 'disperser', 'distortion', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'photom', 'regions', 'sflat', 'specwcs', 'wavelengthrange']
2025-05-13 13:58:24,873 - stpipe.Image2Pipeline - INFO - Prefetch for AREA reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits'.
2025-05-13 13:58:24,873 - stpipe.Image2Pipeline - INFO - Prefetch for CAMERA reference file is 'N/A'.
2025-05-13 13:58:24,874 - stpipe.Image2Pipeline - INFO - Prefetch for COLLIMATOR reference file is 'N/A'.
2025-05-13 13:58:24,874 - stpipe.Image2Pipeline - INFO - Prefetch for DFLAT reference file is 'N/A'.
2025-05-13 13:58:24,874 - stpipe.Image2Pipeline - INFO - Prefetch for DISPERSER reference file is 'N/A'.
2025-05-13 13:58:24,875 - stpipe.Image2Pipeline - INFO - Prefetch for DISTORTION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_distortion_0047.asdf'.
2025-05-13 13:58:24,875 - stpipe.Image2Pipeline - INFO - Prefetch for FFLAT reference file is 'N/A'.
2025-05-13 13:58:24,876 - stpipe.Image2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_filteroffset_0006.asdf'.
2025-05-13 13:58:24,876 - stpipe.Image2Pipeline - INFO - Prefetch for FLAT reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits'.
2025-05-13 13:58:24,877 - stpipe.Image2Pipeline - INFO - Prefetch for FORE reference file is 'N/A'.
2025-05-13 13:58:24,877 - stpipe.Image2Pipeline - INFO - Prefetch for FPA reference file is 'N/A'.
2025-05-13 13:58:24,877 - stpipe.Image2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'.
2025-05-13 13:58:24,878 - stpipe.Image2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'.
2025-05-13 13:58:24,878 - stpipe.Image2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'.
2025-05-13 13:58:24,879 - stpipe.Image2Pipeline - INFO - Prefetch for MSA reference file is 'N/A'.
2025-05-13 13:58:24,879 - stpipe.Image2Pipeline - INFO - Prefetch for OTE reference file is 'N/A'.
2025-05-13 13:58:24,879 - stpipe.Image2Pipeline - INFO - Prefetch for PHOTOM reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits'.
2025-05-13 13:58:24,880 - stpipe.Image2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'.
2025-05-13 13:58:24,880 - stpipe.Image2Pipeline - INFO - Prefetch for SFLAT reference file is 'N/A'.
2025-05-13 13:58:24,880 - stpipe.Image2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'.
2025-05-13 13:58:24,881 - stpipe.Image2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is 'N/A'.
2025-05-13 13:58:24,881 - stpipe.Image2Pipeline - INFO - Starting calwebb_image2 ...
2025-05-13 13:58:24,882 - stpipe.Image2Pipeline - INFO - Processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00015_nis
2025-05-13 13:58:24,882 - stpipe.Image2Pipeline - INFO - Working on input /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00015_nis_rate.fits ...
2025-05-13 13:58:25,087 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00015_nis_image2pipeline.fits>,).
2025-05-13 13:58:25,245 - stpipe.Image2Pipeline.assign_wcs - INFO - Offsets from filteroffset file are 0.0, 0.0
2025-05-13 13:58:25,293 - stpipe.Image2Pipeline.assign_wcs - INFO - Update S_REGION to POLYGON ICRS 303.739335715 -26.793068487 303.779984756 -26.783983007 303.769681579 -26.748004745 303.729070620 -26.757071939
2025-05-13 13:58:25,293 - stpipe.Image2Pipeline.assign_wcs - INFO - assign_wcs updated S_REGION to POLYGON ICRS 303.739335715 -26.793068487 303.779984756 -26.783983007 303.769681579 -26.748004745 303.729070620 -26.757071939
2025-05-13 13:58:25,294 - stpipe.Image2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs
2025-05-13 13:58:25,338 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs done
2025-05-13 13:58:25,500 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00015_nis_image2pipeline.fits>,).
2025-05-13 13:58:25,582 - stpipe.Image2Pipeline.flat_field - INFO - Using FLAT reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits
2025-05-13 13:58:25,583 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type FFLAT
2025-05-13 13:58:25,583 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type SFLAT
2025-05-13 13:58:25,584 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type DFLAT
2025-05-13 13:58:25,742 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field done
2025-05-13 13:58:25,907 - stpipe.Image2Pipeline.photom - INFO - Step photom running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00015_nis_image2pipeline.fits>,).
2025-05-13 13:58:25,928 - stpipe.Image2Pipeline.photom - INFO - Using photom reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits
2025-05-13 13:58:25,929 - stpipe.Image2Pipeline.photom - INFO - Using area reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits
2025-05-13 13:58:25,961 - stpipe.Image2Pipeline.photom - INFO - Using instrument: NIRISS
2025-05-13 13:58:25,962 - stpipe.Image2Pipeline.photom - INFO - detector: NIS
2025-05-13 13:58:25,962 - stpipe.Image2Pipeline.photom - INFO - exp_type: NIS_IMAGE
2025-05-13 13:58:25,963 - stpipe.Image2Pipeline.photom - INFO - filter: CLEAR
2025-05-13 13:58:25,963 - stpipe.Image2Pipeline.photom - INFO - pupil: F150W
2025-05-13 13:58:25,987 - stpipe.Image2Pipeline.photom - INFO - Pixel area map copied to output.
2025-05-13 13:58:25,987 - stpipe.Image2Pipeline.photom - INFO - Values for PIXAR_SR and PIXAR_A2 obtained from AREA reference file.
2025-05-13 13:58:25,989 - stpipe.Image2Pipeline.photom - INFO - PHOTMJSR value: 0.256435
2025-05-13 13:58:26,037 - stpipe.Image2Pipeline.photom - INFO - Step photom done
2025-05-13 13:58:26,207 - stpipe.Image2Pipeline.resample - INFO - Step resample running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00015_nis_image2pipeline.fits>,).
2025-05-13 13:58:26,208 - stpipe.Image2Pipeline.resample - INFO - Step skipped.
2025-05-13 13:58:26,209 - stpipe.Image2Pipeline - INFO - Finished processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00015_nis
2025-05-13 13:58:26,210 - stpipe.Image2Pipeline - INFO - ... ending calwebb_image2
2025-05-13 13:58:26,210 - stpipe.Image2Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:58:26,380 - stpipe.Image2Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00015_nis_cal.fits
2025-05-13 13:58:26,381 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline done
2025-05-13 13:58:26,381 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:58:26,432 - stpipe - INFO - PARS-RESAMPLESTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-resamplestep_0001.asdf
2025-05-13 13:58:26,440 - stpipe - INFO - PARS-IMAGE2PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-image2pipeline_0002.asdf
2025-05-13 13:58:26,451 - stpipe.Image2Pipeline - INFO - Image2Pipeline instance created.
2025-05-13 13:58:26,452 - stpipe.Image2Pipeline.bkg_subtract - INFO - BackgroundStep instance created.
2025-05-13 13:58:26,453 - stpipe.Image2Pipeline.assign_wcs - INFO - AssignWcsStep instance created.
2025-05-13 13:58:26,454 - stpipe.Image2Pipeline.flat_field - INFO - FlatFieldStep instance created.
2025-05-13 13:58:26,455 - stpipe.Image2Pipeline.photom - INFO - PhotomStep instance created.
2025-05-13 13:58:26,456 - stpipe.Image2Pipeline.resample - INFO - ResampleStep instance created.
2025-05-13 13:58:26,619 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline running with args (np.str_('/home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00016_nis_rate.fits'),).
2025-05-13 13:58:26,627 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage2
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_bsub: False
steps:
bkg_subtract:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
save_combined_background: False
sigma: 3.0
maxiters: None
wfss_mmag_extract: None
wfss_maxiter: 5
wfss_rms_stop: 0.0
wfss_outlier_percent: 1.0
assign_wcs:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
sip_approx: True
sip_max_pix_error: 0.01
sip_degree: None
sip_max_inv_pix_error: 0.01
sip_inv_degree: None
sip_npoints: 12
slit_y_low: -0.55
slit_y_high: 0.55
flat_field:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_interpolated_flat: False
user_supplied_flat: None
inverse: False
photom:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
inverse: False
source_type: None
mrs_time_correction: True
resample:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
pixfrac: 1.0
kernel: square
fillval: NAN
weight_type: ivm
output_shape: None
crpix: None
crval: None
rotation: None
pixel_scale_ratio: 1.0
pixel_scale: None
output_wcs: ''
single: False
blendheaders: True
in_memory: True
2025-05-13 13:58:26,672 - stpipe.Image2Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00016_nis_rate.fits' reftypes = ['area', 'camera', 'collimator', 'dflat', 'disperser', 'distortion', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'photom', 'regions', 'sflat', 'specwcs', 'wavelengthrange']
2025-05-13 13:58:26,676 - stpipe.Image2Pipeline - INFO - Prefetch for AREA reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits'.
2025-05-13 13:58:26,676 - stpipe.Image2Pipeline - INFO - Prefetch for CAMERA reference file is 'N/A'.
2025-05-13 13:58:26,677 - stpipe.Image2Pipeline - INFO - Prefetch for COLLIMATOR reference file is 'N/A'.
2025-05-13 13:58:26,677 - stpipe.Image2Pipeline - INFO - Prefetch for DFLAT reference file is 'N/A'.
2025-05-13 13:58:26,677 - stpipe.Image2Pipeline - INFO - Prefetch for DISPERSER reference file is 'N/A'.
2025-05-13 13:58:26,678 - stpipe.Image2Pipeline - INFO - Prefetch for DISTORTION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_distortion_0047.asdf'.
2025-05-13 13:58:26,678 - stpipe.Image2Pipeline - INFO - Prefetch for FFLAT reference file is 'N/A'.
2025-05-13 13:58:26,679 - stpipe.Image2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_filteroffset_0006.asdf'.
2025-05-13 13:58:26,679 - stpipe.Image2Pipeline - INFO - Prefetch for FLAT reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits'.
2025-05-13 13:58:26,679 - stpipe.Image2Pipeline - INFO - Prefetch for FORE reference file is 'N/A'.
2025-05-13 13:58:26,680 - stpipe.Image2Pipeline - INFO - Prefetch for FPA reference file is 'N/A'.
2025-05-13 13:58:26,680 - stpipe.Image2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'.
2025-05-13 13:58:26,681 - stpipe.Image2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'.
2025-05-13 13:58:26,681 - stpipe.Image2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'.
2025-05-13 13:58:26,681 - stpipe.Image2Pipeline - INFO - Prefetch for MSA reference file is 'N/A'.
2025-05-13 13:58:26,682 - stpipe.Image2Pipeline - INFO - Prefetch for OTE reference file is 'N/A'.
2025-05-13 13:58:26,682 - stpipe.Image2Pipeline - INFO - Prefetch for PHOTOM reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits'.
2025-05-13 13:58:26,683 - stpipe.Image2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'.
2025-05-13 13:58:26,684 - stpipe.Image2Pipeline - INFO - Prefetch for SFLAT reference file is 'N/A'.
2025-05-13 13:58:26,684 - stpipe.Image2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'.
2025-05-13 13:58:26,684 - stpipe.Image2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is 'N/A'.
2025-05-13 13:58:26,685 - stpipe.Image2Pipeline - INFO - Starting calwebb_image2 ...
2025-05-13 13:58:26,685 - stpipe.Image2Pipeline - INFO - Processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00016_nis
2025-05-13 13:58:26,686 - stpipe.Image2Pipeline - INFO - Working on input /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00016_nis_rate.fits ...
2025-05-13 13:58:26,894 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00016_nis_image2pipeline.fits>,).
2025-05-13 13:58:27,051 - stpipe.Image2Pipeline.assign_wcs - INFO - Offsets from filteroffset file are 0.0, 0.0
2025-05-13 13:58:27,113 - stpipe.Image2Pipeline.assign_wcs - INFO - Update S_REGION to POLYGON ICRS 303.742446842 -26.794692986 303.783096219 -26.785606626 303.772791916 -26.749628587 303.732180624 -26.758696660
2025-05-13 13:58:27,114 - stpipe.Image2Pipeline.assign_wcs - INFO - assign_wcs updated S_REGION to POLYGON ICRS 303.742446842 -26.794692986 303.783096219 -26.785606626 303.772791916 -26.749628587 303.732180624 -26.758696660
2025-05-13 13:58:27,114 - stpipe.Image2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs
2025-05-13 13:58:27,159 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs done
2025-05-13 13:58:27,322 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00016_nis_image2pipeline.fits>,).
2025-05-13 13:58:27,405 - stpipe.Image2Pipeline.flat_field - INFO - Using FLAT reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits
2025-05-13 13:58:27,406 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type FFLAT
2025-05-13 13:58:27,406 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type SFLAT
2025-05-13 13:58:27,407 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type DFLAT
2025-05-13 13:58:27,589 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field done
2025-05-13 13:58:27,756 - stpipe.Image2Pipeline.photom - INFO - Step photom running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00016_nis_image2pipeline.fits>,).
2025-05-13 13:58:27,777 - stpipe.Image2Pipeline.photom - INFO - Using photom reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits
2025-05-13 13:58:27,778 - stpipe.Image2Pipeline.photom - INFO - Using area reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits
2025-05-13 13:58:27,811 - stpipe.Image2Pipeline.photom - INFO - Using instrument: NIRISS
2025-05-13 13:58:27,811 - stpipe.Image2Pipeline.photom - INFO - detector: NIS
2025-05-13 13:58:27,812 - stpipe.Image2Pipeline.photom - INFO - exp_type: NIS_IMAGE
2025-05-13 13:58:27,812 - stpipe.Image2Pipeline.photom - INFO - filter: CLEAR
2025-05-13 13:58:27,813 - stpipe.Image2Pipeline.photom - INFO - pupil: F150W
2025-05-13 13:58:27,838 - stpipe.Image2Pipeline.photom - INFO - Pixel area map copied to output.
2025-05-13 13:58:27,838 - stpipe.Image2Pipeline.photom - INFO - Values for PIXAR_SR and PIXAR_A2 obtained from AREA reference file.
2025-05-13 13:58:27,839 - stpipe.Image2Pipeline.photom - INFO - PHOTMJSR value: 0.256435
2025-05-13 13:58:27,887 - stpipe.Image2Pipeline.photom - INFO - Step photom done
2025-05-13 13:58:28,054 - stpipe.Image2Pipeline.resample - INFO - Step resample running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00016_nis_image2pipeline.fits>,).
2025-05-13 13:58:28,055 - stpipe.Image2Pipeline.resample - INFO - Step skipped.
2025-05-13 13:58:28,057 - stpipe.Image2Pipeline - INFO - Finished processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00016_nis
2025-05-13 13:58:28,057 - stpipe.Image2Pipeline - INFO - ... ending calwebb_image2
2025-05-13 13:58:28,058 - stpipe.Image2Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:58:28,232 - stpipe.Image2Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00016_nis_cal.fits
2025-05-13 13:58:28,232 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline done
2025-05-13 13:58:28,233 - stpipe - INFO - Results used jwst version: 1.18.0
2025-05-13 13:58:28,284 - stpipe - INFO - PARS-RESAMPLESTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-resamplestep_0001.asdf
2025-05-13 13:58:28,292 - stpipe - INFO - PARS-IMAGE2PIPELINE parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-image2pipeline_0002.asdf
2025-05-13 13:58:28,303 - stpipe.Image2Pipeline - INFO - Image2Pipeline instance created.
2025-05-13 13:58:28,304 - stpipe.Image2Pipeline.bkg_subtract - INFO - BackgroundStep instance created.
2025-05-13 13:58:28,305 - stpipe.Image2Pipeline.assign_wcs - INFO - AssignWcsStep instance created.
2025-05-13 13:58:28,306 - stpipe.Image2Pipeline.flat_field - INFO - FlatFieldStep instance created.
2025-05-13 13:58:28,307 - stpipe.Image2Pipeline.photom - INFO - PhotomStep instance created.
2025-05-13 13:58:28,309 - stpipe.Image2Pipeline.resample - INFO - ResampleStep instance created.
2025-05-13 13:58:28,470 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline running with args (np.str_('/home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00017_nis_rate.fits'),).
2025-05-13 13:58:28,478 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage2
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_bsub: False
steps:
bkg_subtract:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
save_combined_background: False
sigma: 3.0
maxiters: None
wfss_mmag_extract: None
wfss_maxiter: 5
wfss_rms_stop: 0.0
wfss_outlier_percent: 1.0
assign_wcs:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
sip_approx: True
sip_max_pix_error: 0.01
sip_degree: None
sip_max_inv_pix_error: 0.01
sip_inv_degree: None
sip_npoints: 12
slit_y_low: -0.55
slit_y_high: 0.55
flat_field:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_interpolated_flat: False
user_supplied_flat: None
inverse: False
photom:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
inverse: False
source_type: None
mrs_time_correction: True
resample:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: True
suffix: None
search_output_file: True
input_dir: ''
pixfrac: 1.0
kernel: square
fillval: NAN
weight_type: ivm
output_shape: None
crpix: None
crval: None
rotation: None
pixel_scale_ratio: 1.0
pixel_scale: None
output_wcs: ''
single: False
blendheaders: True
in_memory: True
2025-05-13 13:58:28,523 - stpipe.Image2Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00017_nis_rate.fits' reftypes = ['area', 'camera', 'collimator', 'dflat', 'disperser', 'distortion', 'fflat', 'filteroffset', 'flat', 'fore', 'fpa', 'ifufore', 'ifupost', 'ifuslicer', 'msa', 'ote', 'photom', 'regions', 'sflat', 'specwcs', 'wavelengthrange']
2025-05-13 13:58:28,526 - stpipe.Image2Pipeline - INFO - Prefetch for AREA reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits'.
2025-05-13 13:58:28,527 - stpipe.Image2Pipeline - INFO - Prefetch for CAMERA reference file is 'N/A'.
2025-05-13 13:58:28,527 - stpipe.Image2Pipeline - INFO - Prefetch for COLLIMATOR reference file is 'N/A'.
2025-05-13 13:58:28,528 - stpipe.Image2Pipeline - INFO - Prefetch for DFLAT reference file is 'N/A'.
2025-05-13 13:58:28,528 - stpipe.Image2Pipeline - INFO - Prefetch for DISPERSER reference file is 'N/A'.
2025-05-13 13:58:28,529 - stpipe.Image2Pipeline - INFO - Prefetch for DISTORTION reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_distortion_0047.asdf'.
2025-05-13 13:58:28,530 - stpipe.Image2Pipeline - INFO - Prefetch for FFLAT reference file is 'N/A'.
2025-05-13 13:58:28,530 - stpipe.Image2Pipeline - INFO - Prefetch for FILTEROFFSET reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_filteroffset_0006.asdf'.
2025-05-13 13:58:28,531 - stpipe.Image2Pipeline - INFO - Prefetch for FLAT reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits'.
2025-05-13 13:58:28,531 - stpipe.Image2Pipeline - INFO - Prefetch for FORE reference file is 'N/A'.
2025-05-13 13:58:28,531 - stpipe.Image2Pipeline - INFO - Prefetch for FPA reference file is 'N/A'.
2025-05-13 13:58:28,532 - stpipe.Image2Pipeline - INFO - Prefetch for IFUFORE reference file is 'N/A'.
2025-05-13 13:58:28,532 - stpipe.Image2Pipeline - INFO - Prefetch for IFUPOST reference file is 'N/A'.
2025-05-13 13:58:28,533 - stpipe.Image2Pipeline - INFO - Prefetch for IFUSLICER reference file is 'N/A'.
2025-05-13 13:58:28,533 - stpipe.Image2Pipeline - INFO - Prefetch for MSA reference file is 'N/A'.
2025-05-13 13:58:28,534 - stpipe.Image2Pipeline - INFO - Prefetch for OTE reference file is 'N/A'.
2025-05-13 13:58:28,534 - stpipe.Image2Pipeline - INFO - Prefetch for PHOTOM reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits'.
2025-05-13 13:58:28,534 - stpipe.Image2Pipeline - INFO - Prefetch for REGIONS reference file is 'N/A'.
2025-05-13 13:58:28,535 - stpipe.Image2Pipeline - INFO - Prefetch for SFLAT reference file is 'N/A'.
2025-05-13 13:58:28,535 - stpipe.Image2Pipeline - INFO - Prefetch for SPECWCS reference file is 'N/A'.
2025-05-13 13:58:28,536 - stpipe.Image2Pipeline - INFO - Prefetch for WAVELENGTHRANGE reference file is 'N/A'.
2025-05-13 13:58:28,536 - stpipe.Image2Pipeline - INFO - Starting calwebb_image2 ...
2025-05-13 13:58:28,537 - stpipe.Image2Pipeline - INFO - Processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00017_nis
2025-05-13 13:58:28,537 - stpipe.Image2Pipeline - INFO - Working on input /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00017_nis_rate.fits ...
2025-05-13 13:58:28,748 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00017_nis_image2pipeline.fits>,).
2025-05-13 13:58:28,905 - stpipe.Image2Pipeline.assign_wcs - INFO - Offsets from filteroffset file are 0.0, 0.0
2025-05-13 13:58:28,954 - stpipe.Image2Pipeline.assign_wcs - INFO - Update S_REGION to POLYGON ICRS 303.744266550 -26.791915934 303.784914766 -26.782828984 303.774610061 -26.746851095 303.733999926 -26.755919758
2025-05-13 13:58:28,955 - stpipe.Image2Pipeline.assign_wcs - INFO - assign_wcs updated S_REGION to POLYGON ICRS 303.744266550 -26.791915934 303.784914766 -26.782828984 303.774610061 -26.746851095 303.733999926 -26.755919758
2025-05-13 13:58:28,955 - stpipe.Image2Pipeline.assign_wcs - INFO - COMPLETED assign_wcs
2025-05-13 13:58:29,000 - stpipe.Image2Pipeline.assign_wcs - INFO - Step assign_wcs done
2025-05-13 13:58:29,170 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00017_nis_image2pipeline.fits>,).
2025-05-13 13:58:29,253 - stpipe.Image2Pipeline.flat_field - INFO - Using FLAT reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_flat_0282.fits
2025-05-13 13:58:29,254 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type FFLAT
2025-05-13 13:58:29,254 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type SFLAT
2025-05-13 13:58:29,255 - stpipe.Image2Pipeline.flat_field - INFO - No reference found for type DFLAT
2025-05-13 13:58:29,431 - stpipe.Image2Pipeline.flat_field - INFO - Step flat_field done
2025-05-13 13:58:29,604 - stpipe.Image2Pipeline.photom - INFO - Step photom running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00017_nis_image2pipeline.fits>,).
2025-05-13 13:58:29,626 - stpipe.Image2Pipeline.photom - INFO - Using photom reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_photom_0046.fits
2025-05-13 13:58:29,626 - stpipe.Image2Pipeline.photom - INFO - Using area reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_area_0021.fits
2025-05-13 13:58:29,659 - stpipe.Image2Pipeline.photom - INFO - Using instrument: NIRISS
2025-05-13 13:58:29,659 - stpipe.Image2Pipeline.photom - INFO - detector: NIS
2025-05-13 13:58:29,660 - stpipe.Image2Pipeline.photom - INFO - exp_type: NIS_IMAGE
2025-05-13 13:58:29,660 - stpipe.Image2Pipeline.photom - INFO - filter: CLEAR
2025-05-13 13:58:29,661 - stpipe.Image2Pipeline.photom - INFO - pupil: F150W
2025-05-13 13:58:29,685 - stpipe.Image2Pipeline.photom - INFO - Pixel area map copied to output.
2025-05-13 13:58:29,685 - stpipe.Image2Pipeline.photom - INFO - Values for PIXAR_SR and PIXAR_A2 obtained from AREA reference file.
2025-05-13 13:58:29,687 - stpipe.Image2Pipeline.photom - INFO - PHOTMJSR value: 0.256435
2025-05-13 13:58:29,735 - stpipe.Image2Pipeline.photom - INFO - Step photom done
2025-05-13 13:58:29,904 - stpipe.Image2Pipeline.resample - INFO - Step resample running with args (<ImageModel(2048, 2048) from ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00017_nis_image2pipeline.fits>,).
2025-05-13 13:58:29,904 - stpipe.Image2Pipeline.resample - INFO - Step skipped.
2025-05-13 13:58:29,906 - stpipe.Image2Pipeline - INFO - Finished processing product /home/runner/work/jwst-pipeline-notebooks/jwst-pipeline-notebooks/notebooks/NIRISS/Imaging/nis_im_demo_data/Obs006/stage1/jw01475006001_02201_00017_nis
2025-05-13 13:58:29,906 - stpipe.Image2Pipeline - INFO - ... ending calwebb_image2
2025-05-13 13:58:29,907 - stpipe.Image2Pipeline - INFO - Results used CRDS context: jwst_1364.pmap
2025-05-13 13:58:30,080 - stpipe.Image2Pipeline - INFO - Saved model in ./nis_im_demo_data/Obs006/stage2/jw01475006001_02201_00017_nis_cal.fits
2025-05-13 13:58:30,080 - stpipe.Image2Pipeline - INFO - Step Image2Pipeline done
2025-05-13 13:58:30,081 - stpipe - INFO - Results used jwst version: 1.18.0
# Print out the time benchmark
time1 = time.perf_counter()
print(f"Runtime so far: {time1 - time0:0.0f} seconds")
print(f"Runtime for Image2: {time1 - time_image2:0.0f} seconds")
Runtime so far: 590 seconds
Runtime for Image2: 36 seconds
Verify which pipeline steps were run#
if doimage2:
# Identify *_cal.fits files
cal_files = sorted(glob.glob(os.path.join(image2_dir, '*_cal.fits')))
cal_f = datamodels.open(cal_files[0])
# Check which steps were run:
cal_f.meta.cal_step.instance
Check which reference files were used to calibrate the dataset:
if doimage2:
cal_f.meta.ref_file.instance
7. Image3 Pipeline#
In the Image3 stage of the pipeline,
the individual *_cal.fits files for each of the dither positions are combined to one single
distortion corrected image. First, an Association
needs to be created to inform the pipeline that these individual exposures are linked together.
By default, the Image3 stage of the pipeline performs the following steps on NIRISS data:
tweakreg - creates source catalogs of pointlike sources for each input image. The source catalog for each input image is compared to each other to derive coordinate transforms to align the images relative to each other.
As of CRDS context
jwst_1156.pmapand later, thepars-tweakregparameter reference file for NIRISS performs an absolute astrometric correction to GAIA data release 3 by default (i.e., theabs_refcatparameter is set toGAIADR3). Though this default correction generally improves results compared with not doing this alignment, it could potentially result in poor performance in crowded or sparse fields, so users are encouraged to check astrometric accuracy and revisit this step if necessary.As of pipeline version 1.14.0, the default source finding algorithm for NIRISS is
IRAFStarFinderwhich testing shows returns good accuracy for undersampled NIRISS PSFs at short wavelengths (Goudfrooij 2022).skymatch - measures the background level from the sky to use as input into the subsequent
outlier detectionandresamplesteps.outlier detection - flags any remaining cosmic rays, bad pixels, or other artifacts not already flagged during the
DETECTOR1stage of the pipeline, using all input images to create a median image so that outliers in individual images can be identified.resample - resamples each input image based on its WCS and distortion information and creates a single undistorted image.
source catalog - creates a catalog of detected sources along with measured photometries and morphologies (i.e., point-like vs extended). Useful for quicklooks, but optimization is likely needed for specific science cases, which is an on-going investigation for the NIRISS team. Users may wish to experiment with changing the
snr_thresholdanddeblendoptions. Modifications to the following parameters will not significantly improve data quality and it is advised to keep them at their default values:aperture_ee1,aperture_ee2,aperture_ee3,ci1_star_threshold,ci2_star_threshold.
time_image3 = time.perf_counter()
# Set up a dictionary to define how the Image3 pipeline should be configured
# Boilerplate dictionary setup
image3dict = {}
image3dict['assign_mtwcs'], image3dict['tweakreg'], image3dict['skymatch'] = {}, {}, {}
image3dict['outlier_detection'], image3dict['resample'], image3dict['source_catalog'] = {}, {}, {}
# Overrides for whether or not certain steps should be skipped (example)
#image3dict['outlier_detection']['skip'] = True
# Overrides for various reference files
# Files should be in the base local directory or provide full path
#image3dict['source_catalog']['override_apcorr'] = 'myfile.fits' # Aperture correction parameters
#image3dict['source_catalog']['override_abvegaoffset'] = 'myfile.asdf' # Data to convert from AB to Vega magnitudes (ASDF file)
Find and sort all of the input files, ensuring use of absolute paths
# Science Files need the cal.fits files
sstring = os.path.join(image2_dir, 'jw*cal.fits')
cal_files = sorted(glob.glob(sstring))
for ii in range(0, len(cal_files)):
cal_files[ii] = os.path.abspath(cal_files[ii])
calfiles = np.array(cal_files)
print(f'Found {str(len(cal_files))} science files to process')
Found 17 science files to process
Create Association File#
An association file lists the exposures to calibrated together in Stage 3
of the pipeline. Note that an association file is available for download
from MAST, with a filename of *_asn.json. Here we show how to create an
association file to point to the data products created when processing data
through the pipeline. Note that the output products will have a rootname
that is specified by the product_name in the association file. For
this tutorial, the rootname of the output products will be
image3_association.
# Create a Level 3 Association
if doimage3:
associations = asn_from_list.asn_from_list(cal_files,
rule=DMS_Level3_Base,
product_name='image3_association')
associations.data['asn_type'] = 'image3'
program = datamodels.open(cal_files[0]).meta.observation.program_number
associations.data['program'] = program
# Format association as .json file
asn_filename, serialized = associations.dump(format="json")
# Write out association file
association_im3 = os.path.join(sci_dir, asn_filename)
with open(association_im3, "w") as fd:
fd.write(serialized)
2025-05-13 13:58:30,324 - stpipe - WARNING - /usr/share/miniconda/lib/python3.13/site-packages/jwst/associations/association.py:215: UserWarning: Input association file contains path information; note that this can complicate usage and/or sharing of such files.
warnings.warn(err_str, UserWarning)
Run Image3 stage of the pipeline#
Given the grouped exposures in the association file, the
Image3 stage of the pipeline will produce:
a
*_cr.fitsfile produced by theoutlier_detectionstep, where theDQarray marks the pixels flagged as outliers.a final combined, rectified image with name
*_i2d.fits,a source catalog with name
*_cat.ecsv,a segmentation map file (
*_segm.fits) which has integer values at the pixel locations where a source is detected where the pixel values match the source ID number in the catalog.
# Run Stage 3
if doimage3:
i2d_result = Image3Pipeline.call(association_im3, output_dir=image3_dir, steps=image3dict, save_results=True)
else:
print('Skipping Spec3 processing')
2025-05-13 13:58:30,491 - CRDS - INFO - Fetching /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-tweakregstep_0079.asdf 1.7 K bytes (1 / 1 files) (0 / 1.7 K bytes)
2025-05-13 13:58:30,579 - stpipe - INFO - PARS-TWEAKREGSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-tweakregstep_0079.asdf
2025-05-13 13:58:30,590 - CRDS - INFO - Fetching /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-outlierdetectionstep_0010.asdf 5.3 K bytes (1 / 1 files) (0 / 5.3 K bytes)
2025-05-13 13:58:30,707 - stpipe - INFO - PARS-OUTLIERDETECTIONSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-outlierdetectionstep_0010.asdf
2025-05-13 13:58:30,721 - stpipe - INFO - PARS-RESAMPLESTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-resamplestep_0001.asdf
2025-05-13 13:58:30,730 - CRDS - INFO - Fetching /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-sourcecatalogstep_0011.asdf 1.3 K bytes (1 / 1 files) (0 / 1.3 K bytes)
2025-05-13 13:58:30,841 - stpipe - INFO - PARS-SOURCECATALOGSTEP parameters found: /home/runner/crds/references/jwst/niriss/jwst_niriss_pars-sourcecatalogstep_0011.asdf
2025-05-13 13:58:30,857 - stpipe.Image3Pipeline - INFO - Image3Pipeline instance created.
2025-05-13 13:58:30,858 - stpipe.Image3Pipeline.assign_mtwcs - INFO - AssignMTWcsStep instance created.
2025-05-13 13:58:30,860 - stpipe.Image3Pipeline.tweakreg - INFO - TweakRegStep instance created.
2025-05-13 13:58:30,862 - stpipe.Image3Pipeline.skymatch - INFO - SkyMatchStep instance created.
2025-05-13 13:58:30,863 - stpipe.Image3Pipeline.outlier_detection - INFO - OutlierDetectionStep instance created.
2025-05-13 13:58:30,864 - stpipe.Image3Pipeline.resample - INFO - ResampleStep instance created.
2025-05-13 13:58:30,865 - stpipe.Image3Pipeline.source_catalog - INFO - SourceCatalogStep instance created.
2025-05-13 13:58:31,030 - stpipe.Image3Pipeline - INFO - Step Image3Pipeline running with args ('./nis_im_demo_data/Obs006/jw01475-a3001_image3_00019_asn.json',).
2025-05-13 13:58:31,043 - stpipe.Image3Pipeline - INFO - Step Image3Pipeline parameters are:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: ./nis_im_demo_data/Obs006/stage3
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: True
skip: False
suffix: None
search_output_file: True
input_dir: ''
in_memory: True
steps:
assign_mtwcs:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: True
output_use_index: True
save_results: False
skip: False
suffix: assign_mtwcs
search_output_file: True
input_dir: ''
tweakreg:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: True
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
save_catalogs: False
use_custom_catalogs: False
catalog_format: ecsv
catfile: ''
starfinder: iraf
snr_threshold: 10
bkg_boxsize: 400
kernel_fwhm: 2.0
minsep_fwhm: 0.0
sigma_radius: 1.5
sharplo: 0.5
sharphi: 3.0
roundlo: 0.0
roundhi: 0.2
brightest: 100
peakmax: None
npixels: 10
connectivity: '8'
nlevels: 32
contrast: 0.001
multithresh_mode: exponential
localbkg_width: 0
apermask_method: correct
kron_params: None
enforce_user_order: False
expand_refcat: False
minobj: 10
fitgeometry: rshift
nclip: 3
sigma: 3.0
searchrad: 1.0
use2dhist: True
separation: 1.5
tolerance: 1.0
xoffset: 0.0
yoffset: 0.0
abs_refcat: GAIADR3
save_abs_catalog: False
abs_minobj: 15
abs_fitgeometry: rshift
abs_nclip: 3
abs_sigma: 3.0
abs_searchrad: 6.0
abs_use2dhist: True
abs_separation: 1.0
abs_tolerance: 0.7
sip_approx: True
sip_max_pix_error: 0.01
sip_degree: None
sip_max_inv_pix_error: 0.01
sip_inv_degree: None
sip_npoints: 12
in_memory: True
skymatch:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
skymethod: match
match_down: True
subtract: False
skylist: None
stepsize: None
skystat: mode
dqbits: ~DO_NOT_USE+NON_SCIENCE
lower: None
upper: None
nclip: 5
lsigma: 4.0
usigma: 4.0
binwidth: 0.1
in_memory: True
outlier_detection:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: False
input_dir: ''
weight_type: ivm
pixfrac: 1.0
kernel: square
fillval: NAN
maskpt: 0.7
snr: 5.0 4.0
scale: 2.1 0.7
backg: 0.0
kernel_size: 7 7
threshold_percent: 99.8
rolling_window_width: 25
ifu_second_check: False
save_intermediate_results: False
resample_data: True
good_bits: ~DO_NOT_USE
in_memory: True
resample:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: None
search_output_file: True
input_dir: ''
pixfrac: 1.0
kernel: square
fillval: NAN
weight_type: ivm
output_shape: None
crpix: None
crval: None
rotation: None
pixel_scale_ratio: 1.0
pixel_scale: None
output_wcs: ''
single: False
blendheaders: True
in_memory: True
source_catalog:
pre_hooks: []
post_hooks: []
output_file: None
output_dir: None
output_ext: .fits
output_use_model: False
output_use_index: True
save_results: False
skip: False
suffix: cat
search_output_file: True
input_dir: ''
bkg_boxsize: 100
kernel_fwhm: 3.0
snr_threshold: 3.0
npixels: 5
deblend: False
aperture_ee1: 50
aperture_ee2: 70
aperture_ee3: 80
ci1_star_threshold: 1.4
ci2_star_threshold: 1.4
2025-05-13 13:58:31,053 - stpipe.Image3Pipeline - WARNING - /usr/share/miniconda/lib/python3.13/site-packages/jwst/associations/association.py:215: UserWarning: Input association file contains path information; note that this can complicate usage and/or sharing of such files.
warnings.warn(err_str, UserWarning)
2025-05-13 13:58:31,181 - stpipe.Image3Pipeline - INFO - Prefetching reference files for dataset: 'jw01475006001_02201_00001_nis_cal.fits' reftypes = ['abvegaoffset', 'apcorr']
2025-05-13 13:58:31,184 - CRDS - INFO - Fetching /home/runner/crds/references/jwst/niriss/jwst_niriss_abvegaoffset_0003.asdf 2.1 K bytes (1 / 2 files) (0 / 16.5 K bytes)
2025-05-13 13:58:31,273 - CRDS - INFO - Fetching /home/runner/crds/references/jwst/niriss/jwst_niriss_apcorr_0008.fits 14.4 K bytes (2 / 2 files) (2.1 K / 16.5 K bytes)
2025-05-13 13:58:31,378 - stpipe.Image3Pipeline - INFO - Prefetch for ABVEGAOFFSET reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_abvegaoffset_0003.asdf'.
2025-05-13 13:58:31,378 - stpipe.Image3Pipeline - INFO - Prefetch for APCORR reference file is '/home/runner/crds/references/jwst/niriss/jwst_niriss_apcorr_0008.fits'.
2025-05-13 13:58:31,379 - stpipe.Image3Pipeline - INFO - Starting calwebb_image3 ...
2025-05-13 13:58:31,388 - stpipe.Image3Pipeline - WARNING - /usr/share/miniconda/lib/python3.13/site-packages/jwst/associations/association.py:215: UserWarning: Input association file contains path information; note that this can complicate usage and/or sharing of such files.
warnings.warn(err_str, UserWarning)
2025-05-13 13:58:31,880 - stpipe.Image3Pipeline.tweakreg - INFO - Step tweakreg running with args (<jwst.datamodels.library.ModelLibrary object at 0x7f326c788440>,).
2025-05-13 13:58:33,283 - stpipe.Image3Pipeline.tweakreg - INFO - Detected 100 sources in jw01475006001_02201_00001_nis_cal.fits.
2025-05-13 13:58:34,820 - stpipe.Image3Pipeline.tweakreg - INFO - Detected 100 sources in jw01475006001_02201_00002_nis_cal.fits.
2025-05-13 13:58:36,384 - stpipe.Image3Pipeline.tweakreg - INFO - Detected 100 sources in jw01475006001_02201_00003_nis_cal.fits.
2025-05-13 13:58:37,948 - stpipe.Image3Pipeline.tweakreg - INFO - Detected 100 sources in jw01475006001_02201_00004_nis_cal.fits.
2025-05-13 13:58:39,504 - stpipe.Image3Pipeline.tweakreg - INFO - Detected 100 sources in jw01475006001_02201_00005_nis_cal.fits.
2025-05-13 13:58:41,061 - stpipe.Image3Pipeline.tweakreg - INFO - Detected 100 sources in jw01475006001_02201_00006_nis_cal.fits.
2025-05-13 13:58:42,618 - stpipe.Image3Pipeline.tweakreg - INFO - Detected 100 sources in jw01475006001_02201_00007_nis_cal.fits.
2025-05-13 13:58:44,164 - stpipe.Image3Pipeline.tweakreg - INFO - Detected 100 sources in jw01475006001_02201_00008_nis_cal.fits.
2025-05-13 13:58:45,722 - stpipe.Image3Pipeline.tweakreg - INFO - Detected 100 sources in jw01475006001_02201_00009_nis_cal.fits.
2025-05-13 13:58:47,324 - stpipe.Image3Pipeline.tweakreg - INFO - Detected 100 sources in jw01475006001_02201_00010_nis_cal.fits.
2025-05-13 13:58:48,926 - stpipe.Image3Pipeline.tweakreg - INFO - Detected 100 sources in jw01475006001_02201_00011_nis_cal.fits.
2025-05-13 13:58:50,506 - stpipe.Image3Pipeline.tweakreg - INFO - Detected 100 sources in jw01475006001_02201_00012_nis_cal.fits.
2025-05-13 13:58:52,072 - stpipe.Image3Pipeline.tweakreg - INFO - Detected 100 sources in jw01475006001_02201_00013_nis_cal.fits.
2025-05-13 13:58:53,636 - stpipe.Image3Pipeline.tweakreg - INFO - Detected 100 sources in jw01475006001_02201_00014_nis_cal.fits.
2025-05-13 13:58:55,418 - stpipe.Image3Pipeline.tweakreg - INFO - Detected 100 sources in jw01475006001_02201_00015_nis_cal.fits.
2025-05-13 13:58:57,031 - stpipe.Image3Pipeline.tweakreg - INFO - Detected 100 sources in jw01475006001_02201_00016_nis_cal.fits.
2025-05-13 13:58:58,633 - stpipe.Image3Pipeline.tweakreg - INFO - Detected 100 sources in jw01475006001_02201_00017_nis_cal.fits.
2025-05-13 13:58:58,655 - stpipe.Image3Pipeline.tweakreg - INFO -
2025-05-13 13:58:58,655 - stpipe.Image3Pipeline.tweakreg - INFO - Number of image groups to be aligned: 17.
2025-05-13 13:58:58,655 - stpipe.Image3Pipeline.tweakreg - INFO -
2025-05-13 13:58:58,656 - stpipe.Image3Pipeline.tweakreg - INFO - ***** tweakwcs.imalign.align_wcs() started on 2025-05-13 13:58:58.655920
2025-05-13 13:58:58,656 - stpipe.Image3Pipeline.tweakreg - INFO - Version 0.8.10
2025-05-13 13:58:58,657 - stpipe.Image3Pipeline.tweakreg - INFO -
2025-05-13 13:59:20,243 - stpipe.Image3Pipeline.tweakreg - INFO - Selected image 'GROUP ID: jw01475006001_02201_17' as reference image
2025-05-13 13:59:20,247 - stpipe.Image3Pipeline.tweakreg - INFO - Aligning image catalog 'GROUP ID: jw01475006001_02201_12' to the reference catalog.
2025-05-13 13:59:20,325 - stpipe.Image3Pipeline.tweakreg - INFO - Matching sources from 'jw01475006001_02201_00012_nis_cal' catalog with sources from the reference 'jw01475006001_02201_00017_nis_cal' catalog.
2025-05-13 13:59:20,325 - stpipe.Image3Pipeline.tweakreg - INFO - Computing initial guess for X and Y shifts...
2025-05-13 13:59:20,327 - stpipe.Image3Pipeline.tweakreg - INFO - Found initial X and Y shifts of 0.049, 0.049 (arcsec) with significance of 77 and 77 matches.
2025-05-13 13:59:20,328 - stpipe.Image3Pipeline.tweakreg - INFO - Found 77 matches for 'GROUP ID: jw01475006001_02201_12'...
2025-05-13 13:59:20,328 - stpipe.Image3Pipeline.tweakreg - INFO - Performing 'rshift' fit
2025-05-13 13:59:20,331 - stpipe.Image3Pipeline.tweakreg - INFO - Computed 'rshift' fit for GROUP ID: jw01475006001_02201_12:
2025-05-13 13:59:20,331 - stpipe.Image3Pipeline.tweakreg - INFO - XSH: -0.00242059 YSH: -0.00135198 ROT: 7.34094e-05 SCALE: 1
2025-05-13 13:59:20,331 - stpipe.Image3Pipeline.tweakreg - INFO -
2025-05-13 13:59:20,332 - stpipe.Image3Pipeline.tweakreg - INFO - FIT RMSE: 0.00547241 FIT MAE: 0.00496825
2025-05-13 13:59:20,332 - stpipe.Image3Pipeline.tweakreg - INFO - Final solution based on 76 objects.
2025-05-13 13:59:20,375 - stpipe.Image3Pipeline.tweakreg - INFO - Added 23 unmatched sources from 'GROUP ID: jw01475006001_02201_12' to the reference catalog.
2025-05-13 13:59:22,884 - stpipe.Image3Pipeline.tweakreg - INFO - Aligning image catalog 'GROUP ID: jw01475006001_02201_13' to the reference catalog.
2025-05-13 13:59:22,964 - stpipe.Image3Pipeline.tweakreg - INFO - Matching sources from 'jw01475006001_02201_00013_nis_cal' catalog with sources from the reference 'jw01475006001_02201_00012_nis_cal' catalog.
2025-05-13 13:59:22,964 - stpipe.Image3Pipeline.tweakreg - INFO - Computing initial guess for X and Y shifts...
2025-05-13 13:59:22,966 - stpipe.Image3Pipeline.tweakreg - INFO - Found initial X and Y shifts of 0.049, 0.049 (arcsec) with significance of 69.38 and 76 matches.
2025-05-13 13:59:22,967 - stpipe.Image3Pipeline.tweakreg - INFO - Found 74 matches for 'GROUP ID: jw01475006001_02201_13'...
2025-05-13 13:59:22,968 - stpipe.Image3Pipeline.tweakreg - INFO - Performing 'rshift' fit
2025-05-13 13:59:22,969 - stpipe.Image3Pipeline.tweakreg - INFO - Computed 'rshift' fit for GROUP ID: jw01475006001_02201_13:
2025-05-13 13:59:22,970 - stpipe.Image3Pipeline.tweakreg - INFO - XSH: 0.00237115 YSH: -0.00094389 ROT: 0.000392282 SCALE: 1
2025-05-13 13:59:22,970 - stpipe.Image3Pipeline.tweakreg - INFO -
2025-05-13 13:59:22,971 - stpipe.Image3Pipeline.tweakreg - INFO - FIT RMSE: 0.00539017 FIT MAE: 0.0047846
2025-05-13 13:59:22,971 - stpipe.Image3Pipeline.tweakreg - INFO - Final solution based on 73 objects.
2025-05-13 13:59:23,020 - stpipe.Image3Pipeline.tweakreg - INFO - Added 26 unmatched sources from 'GROUP ID: jw01475006001_02201_13' to the reference catalog.
2025-05-13 13:59:25,157 - stpipe.Image3Pipeline.tweakreg - INFO - Aligning image catalog 'GROUP ID: jw01475006001_02201_14' to the reference catalog.
2025-05-13 13:59:25,238 - stpipe.Image3Pipeline.tweakreg - INFO - Matching sources from 'jw01475006001_02201_00014_nis_cal' catalog with sources from the reference 'jw01475006001_02201_00013_nis_cal' catalog.
2025-05-13 13:59:25,238 - stpipe.Image3Pipeline.tweakreg - INFO - Computing initial guess for X and Y shifts...
2025-05-13 13:59:25,240 - stpipe.Image3Pipeline.tweakreg - INFO - Found initial X and Y shifts of 0.04972, 0.049 (arcsec) with significance of 82.16 and 91 matches.
2025-05-13 13:59:25,241 - stpipe.Image3Pipeline.tweakreg - INFO - Found 87 matches for 'GROUP ID: jw01475006001_02201_14'...
2025-05-13 13:59:25,241 - stpipe.Image3Pipeline.tweakreg - INFO - Performing 'rshift' fit
2025-05-13 13:59:25,243 - stpipe.Image3Pipeline.tweakreg - INFO - Computed 'rshift' fit for GROUP ID: jw01475006001_02201_14:
2025-05-13 13:59:25,244 - stpipe.Image3Pipeline.tweakreg - INFO - XSH: 0.00372217 YSH: 0.00178405 ROT: 0.000738475 SCALE: 1
2025-05-13 13:59:25,244 - stpipe.Image3Pipeline.tweakreg - INFO -
2025-05-13 13:59:25,245 - stpipe.Image3Pipeline.tweakreg - INFO - FIT RMSE: 0.00446076 FIT MAE: 0.0039467
2025-05-13 13:59:25,245 - stpipe.Image3Pipeline.tweakreg - INFO - Final solution based on 85 objects.
2025-05-13 13:59:25,287 - stpipe.Image3Pipeline.tweakreg - INFO - Added 13 unmatched sources from 'GROUP ID: jw01475006001_02201_14' to the reference catalog.
2025-05-13 13:59:27,614 - stpipe.Image3Pipeline.tweakreg - INFO - Aligning image catalog 'GROUP ID: jw01475006001_02201_1' to the reference catalog.
2025-05-13 13:59:27,691 - stpipe.Image3Pipeline.tweakreg - INFO - Matching sources from 'jw01475006001_02201_00001_nis_cal' catalog with sources from the reference 'jw01475006001_02201_00014_nis_cal' catalog.
2025-05-13 13:59:27,691 - stpipe.Image3Pipeline.tweakreg - INFO - Computing initial guess for X and Y shifts...
2025-05-13 13:59:27,693 - stpipe.Image3Pipeline.tweakreg - INFO - Found initial X and Y shifts of 0.04833, 0.04833 (arcsec) with significance of 81.16 and 98 matches.
2025-05-13 13:59:27,694 - stpipe.Image3Pipeline.tweakreg - INFO - Found 93 matches for 'GROUP ID: jw01475006001_02201_1'...
2025-05-13 13:59:27,695 - stpipe.Image3Pipeline.tweakreg - INFO - Performing 'rshift' fit
2025-05-13 13:59:27,697 - stpipe.Image3Pipeline.tweakreg - INFO - Computed 'rshift' fit for GROUP ID: jw01475006001_02201_1:
2025-05-13 13:59:27,698 - stpipe.Image3Pipeline.tweakreg - INFO - XSH: 0.00259448 YSH: 0.00151203 ROT: 0.000845078 SCALE: 1
2025-05-13 13:59:27,698 - stpipe.Image3Pipeline.tweakreg - INFO -
2025-05-13 13:59:27,698 - stpipe.Image3Pipeline.tweakreg - INFO - FIT RMSE: 0.00995446 FIT MAE: 0.0060873
2025-05-13 13:59:27,699 - stpipe.Image3Pipeline.tweakreg - INFO - Final solution based on 92 objects.
2025-05-13 13:59:27,740 - stpipe.Image3Pipeline.tweakreg - INFO - Added 7 unmatched sources from 'GROUP ID: jw01475006001_02201_1' to the reference catalog.
2025-05-13 13:59:29,828 - stpipe.Image3Pipeline.tweakreg - INFO - Aligning image catalog 'GROUP ID: jw01475006001_02201_16' to the reference catalog.
2025-05-13 13:59:29,904 - stpipe.Image3Pipeline.tweakreg - INFO - Matching sources from 'jw01475006001_02201_00016_nis_cal' catalog with sources from the reference 'jw01475006001_02201_00001_nis_cal' catalog.
2025-05-13 13:59:29,904 - stpipe.Image3Pipeline.tweakreg - INFO - Computing initial guess for X and Y shifts...
2025-05-13 13:59:29,906 - stpipe.Image3Pipeline.tweakreg - INFO - Found initial X and Y shifts of 0.049, 0.049 (arcsec) with significance of 72.17 and 92 matches.
2025-05-13 13:59:29,907 - stpipe.Image3Pipeline.tweakreg - INFO - Found 87 matches for 'GROUP ID: jw01475006001_02201_16'...
2025-05-13 13:59:29,908 - stpipe.Image3Pipeline.tweakreg - INFO - Performing 'rshift' fit
2025-05-13 13:59:29,910 - stpipe.Image3Pipeline.tweakreg - INFO - Computed 'rshift' fit for GROUP ID: jw01475006001_02201_16:
2025-05-13 13:59:29,910 - stpipe.Image3Pipeline.tweakreg - INFO - XSH: -0.00417268 YSH: 0.00067023 ROT: 1.57532e-05 SCALE: 1
2025-05-13 13:59:29,911 - stpipe.Image3Pipeline.tweakreg - INFO -
2025-05-13 13:59:29,911 - stpipe.Image3Pipeline.tweakreg - INFO - FIT RMSE: 0.00489668 FIT MAE: 0.00414459
2025-05-13 13:59:29,911 - stpipe.Image3Pipeline.tweakreg - INFO - Final solution based on 84 objects.
2025-05-13 13:59:29,952 - stpipe.Image3Pipeline.tweakreg - INFO - Added 13 unmatched sources from 'GROUP ID: jw01475006001_02201_16' to the reference catalog.
2025-05-13 13:59:31,895 - stpipe.Image3Pipeline.tweakreg - INFO - Aligning image catalog 'GROUP ID: jw01475006001_02201_8' to the reference catalog.
2025-05-13 13:59:31,973 - stpipe.Image3Pipeline.tweakreg - INFO - Matching sources from 'jw01475006001_02201_00008_nis_cal' catalog with sources from the reference 'jw01475006001_02201_00016_nis_cal' catalog.
2025-05-13 13:59:31,973 - stpipe.Image3Pipeline.tweakreg - INFO - Computing initial guess for X and Y shifts...
2025-05-13 13:59:31,975 - stpipe.Image3Pipeline.tweakreg - INFO - Found initial X and Y shifts of 0.049, 0.049 (arcsec) with significance of 66.52 and 88 matches.
2025-05-13 13:59:31,976 - stpipe.Image3Pipeline.tweakreg - INFO - Found 85 matches for 'GROUP ID: jw01475006001_02201_8'...
2025-05-13 13:59:31,977 - stpipe.Image3Pipeline.tweakreg - INFO - Performing 'rshift' fit
2025-05-13 13:59:31,979 - stpipe.Image3Pipeline.tweakreg - INFO - Computed 'rshift' fit for GROUP ID: jw01475006001_02201_8:
2025-05-13 13:59:31,979 - stpipe.Image3Pipeline.tweakreg - INFO - XSH: -0.000907482 YSH: -0.00460782 ROT: -0.000100495 SCALE: 1
2025-05-13 13:59:31,980 - stpipe.Image3Pipeline.tweakreg - INFO -
2025-05-13 13:59:31,980 - stpipe.Image3Pipeline.tweakreg - INFO - FIT RMSE: 0.00484781 FIT MAE: 0.00436985
2025-05-13 13:59:31,980 - stpipe.Image3Pipeline.tweakreg - INFO - Final solution based on 83 objects.
2025-05-13 13:59:32,022 - stpipe.Image3Pipeline.tweakreg - INFO - Added 15 unmatched sources from 'GROUP ID: jw01475006001_02201_8' to the reference catalog.
2025-05-13 13:59:33,805 - stpipe.Image3Pipeline.tweakreg - INFO - Aligning image catalog 'GROUP ID: jw01475006001_02201_4' to the reference catalog.
2025-05-13 13:59:33,885 - stpipe.Image3Pipeline.tweakreg - INFO - Matching sources from 'jw01475006001_02201_00004_nis_cal' catalog with sources from the reference 'jw01475006001_02201_00008_nis_cal' catalog.
2025-05-13 13:59:33,885 - stpipe.Image3Pipeline.tweakreg - INFO - Computing initial guess for X and Y shifts...
2025-05-13 13:59:33,887 - stpipe.Image3Pipeline.tweakreg - INFO - Found initial X and Y shifts of 0.049, 0.049 (arcsec) with significance of 62.85 and 96 matches.
2025-05-13 13:59:33,888 - stpipe.Image3Pipeline.tweakreg - INFO - Found 91 matches for 'GROUP ID: jw01475006001_02201_4'...
2025-05-13 13:59:33,888 - stpipe.Image3Pipeline.tweakreg - INFO - Performing 'rshift' fit
2025-05-13 13:59:33,890 - stpipe.Image3Pipeline.tweakreg - INFO - Computed 'rshift' fit for GROUP ID: jw01475006001_02201_4:
2025-05-13 13:59:33,891 - stpipe.Image3Pipeline.tweakreg - INFO - XSH: 0.00347272 YSH: -0.00639307 ROT: -0.000242769 SCALE: 1
2025-05-13 13:59:33,891 - stpipe.Image3Pipeline.tweakreg - INFO -
2025-05-13 13:59:33,892 - stpipe.Image3Pipeline.tweakreg - INFO - FIT RMSE: 0.00505041 FIT MAE: 0.00442448
2025-05-13 13:59:33,892 - stpipe.Image3Pipeline.tweakreg - INFO - Final solution based on 90 objects.
2025-05-13 13:59:33,934 - stpipe.Image3Pipeline.tweakreg - INFO - Added 9 unmatched sources from 'GROUP ID: jw01475006001_02201_4' to the reference catalog.
2025-05-13 13:59:35,554 - stpipe.Image3Pipeline.tweakreg - INFO - Aligning image catalog 'GROUP ID: jw01475006001_02201_9' to the reference catalog.
2025-05-13 13:59:35,629 - stpipe.Image3Pipeline.tweakreg - INFO - Matching sources from 'jw01475006001_02201_00009_nis_cal' catalog with sources from the reference 'jw01475006001_02201_00004_nis_cal' catalog.
2025-05-13 13:59:35,630 - stpipe.Image3Pipeline.tweakreg - INFO - Computing initial guess for X and Y shifts...
2025-05-13 13:59:35,632 - stpipe.Image3Pipeline.tweakreg - INFO - Found initial X and Y shifts of 0.049, 0.049 (arcsec) with significance of 58.88 and 97 matches.
2025-05-13 13:59:35,633 - stpipe.Image3Pipeline.tweakreg - INFO - Found 92 matches for 'GROUP ID: jw01475006001_02201_9'...
2025-05-13 13:59:35,634 - stpipe.Image3Pipeline.tweakreg - INFO - Performing 'rshift' fit
2025-05-13 13:59:35,636 - stpipe.Image3Pipeline.tweakreg - INFO - Computed 'rshift' fit for GROUP ID: jw01475006001_02201_9:
2025-05-13 13:59:35,637 - stpipe.Image3Pipeline.tweakreg - INFO - XSH: 0.00553922 YSH: 0.000281298 ROT: 0.000569371 SCALE: 1
2025-05-13 13:59:35,638 - stpipe.Image3Pipeline.tweakreg - INFO -
2025-05-13 13:59:35,639 - stpipe.Image3Pipeline.tweakreg - INFO - FIT RMSE: 0.00660587 FIT MAE: 0.00546397
2025-05-13 13:59:35,639 - stpipe.Image3Pipeline.tweakreg - INFO - Final solution based on 90 objects.
2025-05-13 13:59:35,683 - stpipe.Image3Pipeline.tweakreg - INFO - Added 8 unmatched sources from 'GROUP ID: jw01475006001_02201_9' to the reference catalog.
2025-05-13 13:59:37,157 - stpipe.Image3Pipeline.tweakreg - INFO - Aligning image catalog 'GROUP ID: jw01475006001_02201_11' to the reference catalog.
2025-05-13 13:59:37,239 - stpipe.Image3Pipeline.tweakreg - INFO - Matching sources from 'jw01475006001_02201_00011_nis_cal' catalog with sources from the reference 'jw01475006001_02201_00009_nis_cal' catalog.
2025-05-13 13:59:37,240 - stpipe.Image3Pipeline.tweakreg - INFO - Computing initial guess for X and Y shifts...
2025-05-13 13:59:37,241 - stpipe.Image3Pipeline.tweakreg - INFO - Found initial X and Y shifts of 0.049, 0.049 (arcsec) with significance of 85.34 and 102 matches.
2025-05-13 13:59:37,242 - stpipe.Image3Pipeline.tweakreg - INFO - Found 91 matches for 'GROUP ID: jw01475006001_02201_11'...
2025-05-13 13:59:37,243 - stpipe.Image3Pipeline.tweakreg - INFO - Performing 'rshift' fit
2025-05-13 13:59:37,246 - stpipe.Image3Pipeline.tweakreg - INFO - Computed 'rshift' fit for GROUP ID: jw01475006001_02201_11:
2025-05-13 13:59:37,246 - stpipe.Image3Pipeline.tweakreg - INFO - XSH: -0.000693551 YSH: 0.00490896 ROT: 0.000561631 SCALE: 1
2025-05-13 13:59:37,247 - stpipe.Image3Pipeline.tweakreg - INFO -
2025-05-13 13:59:37,247 - stpipe.Image3Pipeline.tweakreg - INFO - FIT RMSE: 0.00475222 FIT MAE: 0.00393551
2025-05-13 13:59:37,247 - stpipe.Image3Pipeline.tweakreg - INFO - Final solution based on 90 objects.
2025-05-13 13:59:37,290 - stpipe.Image3Pipeline.tweakreg - INFO - Added 9 unmatched sources from 'GROUP ID: jw01475006001_02201_11' to the reference catalog.
2025-05-13 13:59:38,732 - stpipe.Image3Pipeline.tweakreg - INFO - Aligning image catalog 'GROUP ID: jw01475006001_02201_10' to the reference catalog.
2025-05-13 13:59:38,814 - stpipe.Image3Pipeline.tweakreg - INFO - Matching sources from 'jw01475006001_02201_00010_nis_cal' catalog with sources from the reference 'jw01475006001_02201_00011_nis_cal' catalog.
2025-05-13 13:59:38,815 - stpipe.Image3Pipeline.tweakreg - INFO - Computing initial guess for X and Y shifts...
2025-05-13 13:59:38,817 - stpipe.Image3Pipeline.tweakreg - INFO - Found initial X and Y shifts of 0.049, 0.049 (arcsec) with significance of 77.48 and 98 matches.
2025-05-13 13:59:38,818 - stpipe.Image3Pipeline.tweakreg - INFO - Found 91 matches for 'GROUP ID: jw01475006001_02201_10'...
2025-05-13 13:59:38,818 - stpipe.Image3Pipeline.tweakreg - INFO - Performing 'rshift' fit
2025-05-13 13:59:38,820 - stpipe.Image3Pipeline.tweakreg - INFO - Computed 'rshift' fit for GROUP ID: jw01475006001_02201_10:
2025-05-13 13:59:38,821 - stpipe.Image3Pipeline.tweakreg - INFO - XSH: 0.00548268 YSH: 0.00246419 ROT: 0.00089998 SCALE: 1
2025-05-13 13:59:38,821 - stpipe.Image3Pipeline.tweakreg - INFO -
2025-05-13 13:59:38,821 - stpipe.Image3Pipeline.tweakreg - INFO - FIT RMSE: 0.00644638 FIT MAE: 0.00544124
2025-05-13 13:59:38,822 - stpipe.Image3Pipeline.tweakreg - INFO - Final solution based on 90 objects.
2025-05-13 13:59:38,863 - stpipe.Image3Pipeline.tweakreg - INFO - Added 9 unmatched sources from 'GROUP ID: jw01475006001_02201_10' to the reference catalog.
2025-05-13 13:59:40,175 - stpipe.Image3Pipeline.tweakreg - INFO - Aligning image catalog 'GROUP ID: jw01475006001_02201_15' to the reference catalog.
2025-05-13 13:59:40,255 - stpipe.Image3Pipeline.tweakreg - INFO - Matching sources from 'jw01475006001_02201_00015_nis_cal' catalog with sources from the reference 'jw01475006001_02201_00010_nis_cal' catalog.
2025-05-13 13:59:40,256 - stpipe.Image3Pipeline.tweakreg - INFO - Computing initial guess for X and Y shifts...
2025-05-13 13:59:40,257 - stpipe.Image3Pipeline.tweakreg - INFO - Found initial X and Y shifts of 0.049, 0.049 (arcsec) with significance of 71.33 and 105 matches.
2025-05-13 13:59:40,258 - stpipe.Image3Pipeline.tweakreg - INFO - Found 94 matches for 'GROUP ID: jw01475006001_02201_15'...
2025-05-13 13:59:40,259 - stpipe.Image3Pipeline.tweakreg - INFO - Performing 'rshift' fit
2025-05-13 13:59:40,261 - stpipe.Image3Pipeline.tweakreg - INFO - Computed 'rshift' fit for GROUP ID: jw01475006001_02201_15:
2025-05-13 13:59:40,262 - stpipe.Image3Pipeline.tweakreg - INFO - XSH: 0.00182656 YSH: 0.00459056 ROT: 0.00052235 SCALE: 1
2025-05-13 13:59:40,262 - stpipe.Image3Pipeline.tweakreg - INFO -
2025-05-13 13:59:40,262 - stpipe.Image3Pipeline.tweakreg - INFO - FIT RMSE: 0.00549553 FIT MAE: 0.00462533
2025-05-13 13:59:40,263 - stpipe.Image3Pipeline.tweakreg - INFO - Final solution based on 91 objects.
2025-05-13 13:59:40,322 - stpipe.Image3Pipeline.tweakreg - INFO - Added 6 unmatched sources from 'GROUP ID: jw01475006001_02201_15' to the reference catalog.
2025-05-13 13:59:41,424 - stpipe.Image3Pipeline.tweakreg - INFO - Aligning image catalog 'GROUP ID: jw01475006001_02201_5' to the reference catalog.
2025-05-13 13:59:41,507 - stpipe.Image3Pipeline.tweakreg - INFO - Matching sources from 'jw01475006001_02201_00005_nis_cal' catalog with sources from the reference 'jw01475006001_02201_00015_nis_cal' catalog.
2025-05-13 13:59:41,508 - stpipe.Image3Pipeline.tweakreg - INFO - Computing initial guess for X and Y shifts...
2025-05-13 13:59:41,509 - stpipe.Image3Pipeline.tweakreg - INFO - Found initial X and Y shifts of 0.049, 0.049 (arcsec) with significance of 67.75 and 101 matches.
2025-05-13 13:59:41,510 - stpipe.Image3Pipeline.tweakreg - INFO - Found 87 matches for 'GROUP ID: jw01475006001_02201_5'...
2025-05-13 13:59:41,511 - stpipe.Image3Pipeline.tweakreg - INFO - Performing 'rshift' fit
2025-05-13 13:59:41,513 - stpipe.Image3Pipeline.tweakreg - INFO - Computed 'rshift' fit for GROUP ID: jw01475006001_02201_5:
2025-05-13 13:59:41,513 - stpipe.Image3Pipeline.tweakreg - INFO - XSH: 0.00436274 YSH: 0.00387203 ROT: -0.00111971 SCALE: 1
2025-05-13 13:59:41,514 - stpipe.Image3Pipeline.tweakreg - INFO -
2025-05-13 13:59:41,515 - stpipe.Image3Pipeline.tweakreg - INFO - FIT RMSE: 0.00673508 FIT MAE: 0.00566085
2025-05-13 13:59:41,515 - stpipe.Image3Pipeline.tweakreg - INFO - Final solution based on 86 objects.
2025-05-13 13:59:41,556 - stpipe.Image3Pipeline.tweakreg - INFO - Added 13 unmatched sources from 'GROUP ID: jw01475006001_02201_5' to the reference catalog.
2025-05-13 13:59:42,410 - stpipe.Image3Pipeline.tweakreg - INFO - Aligning image catalog 'GROUP ID: jw01475006001_02201_6' to the reference catalog.
2025-05-13 13:59:42,488 - stpipe.Image3Pipeline.tweakreg - INFO - Matching sources from 'jw01475006001_02201_00006_nis_cal' catalog with sources from the reference 'jw01475006001_02201_00005_nis_cal' catalog.
2025-05-13 13:59:42,489 - stpipe.Image3Pipeline.tweakreg - INFO - Computing initial guess for X and Y shifts...
2025-05-13 13:59:42,490 - stpipe.Image3Pipeline.tweakreg - INFO - Found initial X and Y shifts of 0.049, 0.049 (arcsec) with significance of 65.67 and 97 matches.
2025-05-13 13:59:42,492 - stpipe.Image3Pipeline.tweakreg - INFO - Found 89 matches for 'GROUP ID: jw01475006001_02201_6'...
2025-05-13 13:59:42,492 - stpipe.Image3Pipeline.tweakreg - INFO - Performing 'rshift' fit
2025-05-13 13:59:42,494 - stpipe.Image3Pipeline.tweakreg - INFO - Computed 'rshift' fit for GROUP ID: jw01475006001_02201_6:
2025-05-13 13:59:42,495 - stpipe.Image3Pipeline.tweakreg - INFO - XSH: -0.00129787 YSH: 0.00859667 ROT: -0.000370112 SCALE: 1
2025-05-13 13:59:42,495 - stpipe.Image3Pipeline.tweakreg - INFO -
2025-05-13 13:59:42,496 - stpipe.Image3Pipeline.tweakreg - INFO - FIT RMSE: 0.0249858 FIT MAE: 0.00724595
2025-05-13 13:59:42,496 - stpipe.Image3Pipeline.tweakreg - INFO - Final solution based on 86 objects.
2025-05-13 13:59:42,540 - stpipe.Image3Pipeline.tweakreg - INFO - Added 11 unmatched sources from 'GROUP ID: jw01475006001_02201_6' to the reference catalog.
2025-05-13 13:59:43,160 - stpipe.Image3Pipeline.tweakreg - INFO - Aligning image catalog 'GROUP ID: jw01475006001_02201_3' to the reference catalog.
2025-05-13 13:59:43,239 - stpipe.Image3Pipeline.tweakreg - INFO - Matching sources from 'jw01475006001_02201_00003_nis_cal' catalog with sources from the reference 'jw01475006001_02201_00006_nis_cal' catalog.
2025-05-13 13:59:43,240 - stpipe.Image3Pipeline.tweakreg - INFO - Computing initial guess for X and Y shifts...
2025-05-13 13:59:43,241 - stpipe.Image3Pipeline.tweakreg - INFO - Found initial X and Y shifts of 0.049, 0.049 (arcsec) with significance of 57.37 and 96 matches.
2025-05-13 13:59:43,242 - stpipe.Image3Pipeline.tweakreg - INFO - Found 84 matches for 'GROUP ID: jw01475006001_02201_3'...
2025-05-13 13:59:43,243 - stpipe.Image3Pipeline.tweakreg - INFO - Performing 'rshift' fit
2025-05-13 13:59:43,245 - stpipe.Image3Pipeline.tweakreg - INFO - Computed 'rshift' fit for GROUP ID: jw01475006001_02201_3:
2025-05-13 13:59:43,245 - stpipe.Image3Pipeline.tweakreg - INFO - XSH: -0.00660267 YSH: -0.00547301 ROT: 4.14755e-05 SCALE: 1
2025-05-13 13:59:43,246 - stpipe.Image3Pipeline.tweakreg - INFO -
2025-05-13 13:59:43,246 - stpipe.Image3Pipeline.tweakreg - INFO - FIT RMSE: 0.00568366 FIT MAE: 0.00494666
2025-05-13 13:59:43,247 - stpipe.Image3Pipeline.tweakreg - INFO - Final solution based on 82 objects.
2025-05-13 13:59:43,289 - stpipe.Image3Pipeline.tweakreg - INFO - Added 16 unmatched sources from 'GROUP ID: jw01475006001_02201_3' to the reference catalog.
2025-05-13 13:59:43,704 - stpipe.Image3Pipeline.tweakreg - INFO - Aligning image catalog 'GROUP ID: jw01475006001_02201_2' to the reference catalog.
2025-05-13 13:59:43,787 - stpipe.Image3Pipeline.tweakreg - INFO - Matching sources from 'jw01475006001_02201_00002_nis_cal' catalog with sources from the reference 'jw01475006001_02201_00003_nis_cal' catalog.
2025-05-13 13:59:43,788 - stpipe.Image3Pipeline.tweakreg - INFO - Computing initial guess for X and Y shifts...
2025-05-13 13:59:43,789 - stpipe.Image3Pipeline.tweakreg - INFO - Found initial X and Y shifts of 0.049, 0.049 (arcsec) with significance of 61.35 and 97 matches.
2025-05-13 13:59:43,790 - stpipe.Image3Pipeline.tweakreg - INFO - Found 91 matches for 'GROUP ID: jw01475006001_02201_2'...
2025-05-13 13:59:43,791 - stpipe.Image3Pipeline.tweakreg - INFO - Performing 'rshift' fit
2025-05-13 13:59:43,793 - stpipe.Image3Pipeline.tweakreg - INFO - Computed 'rshift' fit for GROUP ID: jw01475006001_02201_2:
2025-05-13 13:59:43,793 - stpipe.Image3Pipeline.tweakreg - INFO - XSH: -0.00252278 YSH: 0.00533419 ROT: -0.000561168 SCALE: 1
2025-05-13 13:59:43,794 - stpipe.Image3Pipeline.tweakreg - INFO -
2025-05-13 13:59:43,794 - stpipe.Image3Pipeline.tweakreg - INFO - FIT RMSE: 0.00510911 FIT MAE: 0.00440909
2025-05-13 13:59:43,795 - stpipe.Image3Pipeline.tweakreg - INFO - Final solution based on 88 objects.
2025-05-13 13:59:44,096 - stpipe.Image3Pipeline.tweakreg - INFO - Added 9 unmatched sources from 'GROUP ID: jw01475006001_02201_2' to the reference catalog.
2025-05-13 13:59:44,307 - stpipe.Image3Pipeline.tweakreg - INFO - Aligning image catalog 'GROUP ID: jw01475006001_02201_7' to the reference catalog.
2025-05-13 13:59:44,389 - stpipe.Image3Pipeline.tweakreg - INFO - Matching sources from 'jw01475006001_02201_00007_nis_cal' catalog with sources from the reference 'jw01475006001_02201_00002_nis_cal' catalog.
2025-05-13 13:59:44,390 - stpipe.Image3Pipeline.tweakreg - INFO - Computing initial guess for X and Y shifts...
2025-05-13 13:59:44,391 - stpipe.Image3Pipeline.tweakreg - INFO - Found initial X and Y shifts of 0.049, 0.049 (arcsec) with significance of 75.58 and 103 matches.
2025-05-13 13:59:44,393 - stpipe.Image3Pipeline.tweakreg - INFO - Found 91 matches for 'GROUP ID: jw01475006001_02201_7'...
2025-05-13 13:59:44,393 - stpipe.Image3Pipeline.tweakreg - INFO - Performing 'rshift' fit
2025-05-13 13:59:44,395 - stpipe.Image3Pipeline.tweakreg - INFO - Computed 'rshift' fit for GROUP ID: jw01475006001_02201_7:
2025-05-13 13:59:44,395 - stpipe.Image3Pipeline.tweakreg - INFO - XSH: -0.0087208 YSH: 0.00296758 ROT: -0.000149005 SCALE: 1
2025-05-13 13:59:44,397 - stpipe.Image3Pipeline.tweakreg - INFO -
2025-05-13 13:59:44,397 - stpipe.Image3Pipeline.tweakreg - INFO - FIT RMSE: 0.00615768 FIT MAE: 0.00532645
2025-05-13 13:59:44,398 - stpipe.Image3Pipeline.tweakreg - INFO - Final solution based on 89 objects.
2025-05-13 13:59:44,445 - stpipe.Image3Pipeline.tweakreg - INFO - Added 9 unmatched sources from 'GROUP ID: jw01475006001_02201_7' to the reference catalog.
2025-05-13 13:59:44,445 - stpipe.Image3Pipeline.tweakreg - INFO -
2025-05-13 13:59:44,446 - stpipe.Image3Pipeline.tweakreg - INFO - ***** tweakwcs.imalign.align_wcs() ended on 2025-05-13 13:59:44.445608
2025-05-13 13:59:44,447 - stpipe.Image3Pipeline.tweakreg - INFO - ***** tweakwcs.imalign.align_wcs() TOTAL RUN TIME: 0:00:45.789688
2025-05-13 13:59:44,447 - stpipe.Image3Pipeline.tweakreg - INFO -
2025-05-13 13:59:45,119 - stpipe.Image3Pipeline.tweakreg - INFO -
2025-05-13 13:59:45,120 - stpipe.Image3Pipeline.tweakreg - INFO - ***** tweakwcs.imalign.align_wcs() started on 2025-05-13 13:59:45.119647
2025-05-13 13:59:45,120 - stpipe.Image3Pipeline.tweakreg - INFO - Version 0.8.10
2025-05-13 13:59:45,121 - stpipe.Image3Pipeline.tweakreg - INFO -
2025-05-13 14:01:33,925 - stpipe.Image3Pipeline.tweakreg - INFO - Aligning image catalog 'GROUP ID: 987654' to the reference catalog.
2025-05-13 14:01:34,014 - stpipe.Image3Pipeline.tweakreg - INFO - Matching sources from 'jw01475006001_02201_000' catalog with sources from the reference 'Unnamed' catalog.
2025-05-13 14:01:34,015 - stpipe.Image3Pipeline.tweakreg - INFO - Computing initial guess for X and Y shifts...
2025-05-13 14:01:34,018 - stpipe.Image3Pipeline.tweakreg - INFO - Found initial X and Y shifts of 0.03175, 0.002141 (arcsec) with significance of 8.033 and 31 matches.
2025-05-13 14:01:34,019 - stpipe.Image3Pipeline.tweakreg - INFO - Found 14 matches for 'GROUP ID: 987654'...
2025-05-13 14:01:34,020 - stpipe.Image3Pipeline.tweakreg - WARNING - Not enough matches ({nmatches:d}) found for image catalog '{name:s}'. Min requred: {minobj:d}.
2025-05-13 14:01:34,020 - stpipe.Image3Pipeline.tweakreg - INFO -
2025-05-13 14:01:34,021 - stpipe.Image3Pipeline.tweakreg - INFO - ***** tweakwcs.imalign.align_wcs() ended on 2025-05-13 14:01:34.020814
2025-05-13 14:01:34,021 - stpipe.Image3Pipeline.tweakreg - INFO - ***** tweakwcs.imalign.align_wcs() TOTAL RUN TIME: 0:01:48.901167
2025-05-13 14:01:34,022 - stpipe.Image3Pipeline.tweakreg - INFO -
2025-05-13 14:01:34,086 - stpipe.Image3Pipeline.tweakreg - INFO - Step tweakreg done
2025-05-13 14:01:34,327 - stpipe.Image3Pipeline.skymatch - INFO - Step skymatch running with args (<jwst.datamodels.library.ModelLibrary object at 0x7f326c788440>,).
2025-05-13 14:01:34,663 - stpipe.Image3Pipeline.skymatch - INFO -
2025-05-13 14:01:34,664 - stpipe.Image3Pipeline.skymatch - INFO - ***** stcal.skymatch.skymatch.skymatch() started on 2025-05-13 14:01:34.663134
2025-05-13 14:01:34,664 - stpipe.Image3Pipeline.skymatch - INFO -
2025-05-13 14:01:34,664 - stpipe.Image3Pipeline.skymatch - INFO - Sky computation method: 'match'
2025-05-13 14:01:34,665 - stpipe.Image3Pipeline.skymatch - INFO - Sky matching direction: DOWN
2025-05-13 14:01:34,665 - stpipe.Image3Pipeline.skymatch - INFO - Sky subtraction from image data: OFF
2025-05-13 14:01:34,667 - stpipe.Image3Pipeline.skymatch - INFO -
2025-05-13 14:01:34,667 - stpipe.Image3Pipeline.skymatch - INFO - ---- Computing differences in sky values in overlapping regions.
2025-05-13 14:02:13,588 - stpipe.Image3Pipeline.skymatch - INFO - * Image ID=jw01475006001_02201_00001_nis_cal.fits. Sky background: 0.000992481
2025-05-13 14:02:13,589 - stpipe.Image3Pipeline.skymatch - INFO - * Image ID=jw01475006001_02201_00002_nis_cal.fits. Sky background: 0
2025-05-13 14:02:13,589 - stpipe.Image3Pipeline.skymatch - INFO - * Image ID=jw01475006001_02201_00003_nis_cal.fits. Sky background: 0.00220989
2025-05-13 14:02:13,590 - stpipe.Image3Pipeline.skymatch - INFO - * Image ID=jw01475006001_02201_00004_nis_cal.fits. Sky background: 0.00270588
2025-05-13 14:02:13,590 - stpipe.Image3Pipeline.skymatch - INFO - * Image ID=jw01475006001_02201_00005_nis_cal.fits. Sky background: 0.00190236
2025-05-13 14:02:13,591 - stpipe.Image3Pipeline.skymatch - INFO - * Image ID=jw01475006001_02201_00006_nis_cal.fits. Sky background: 0.000986488
2025-05-13 14:02:13,591 - stpipe.Image3Pipeline.skymatch - INFO - * Image ID=jw01475006001_02201_00007_nis_cal.fits. Sky background: 0.000446223
2025-05-13 14:02:13,591 - stpipe.Image3Pipeline.skymatch - INFO - * Image ID=jw01475006001_02201_00008_nis_cal.fits. Sky background: 0.00168315
2025-05-13 14:02:13,592 - stpipe.Image3Pipeline.skymatch - INFO - * Image ID=jw01475006001_02201_00009_nis_cal.fits. Sky background: 0.00119713
2025-05-13 14:02:13,592 - stpipe.Image3Pipeline.skymatch - INFO - * Image ID=jw01475006001_02201_00010_nis_cal.fits. Sky background: 0.00244022
2025-05-13 14:02:13,593 - stpipe.Image3Pipeline.skymatch - INFO - * Image ID=jw01475006001_02201_00011_nis_cal.fits. Sky background: 0.000841531
2025-05-13 14:02:13,593 - stpipe.Image3Pipeline.skymatch - INFO - * Image ID=jw01475006001_02201_00012_nis_cal.fits. Sky background: 0.00165659
2025-05-13 14:02:13,594 - stpipe.Image3Pipeline.skymatch - INFO - * Image ID=jw01475006001_02201_00013_nis_cal.fits. Sky background: 0.00170356
2025-05-13 14:02:13,594 - stpipe.Image3Pipeline.skymatch - INFO - * Image ID=jw01475006001_02201_00014_nis_cal.fits. Sky background: 0.00286244
2025-05-13 14:02:13,594 - stpipe.Image3Pipeline.skymatch - INFO - * Image ID=jw01475006001_02201_00015_nis_cal.fits. Sky background: 0.000848057
2025-05-13 14:02:13,595 - stpipe.Image3Pipeline.skymatch - INFO - * Image ID=jw01475006001_02201_00016_nis_cal.fits. Sky background: 0.00210107
2025-05-13 14:02:13,595 - stpipe.Image3Pipeline.skymatch - INFO - * Image ID=jw01475006001_02201_00017_nis_cal.fits. Sky background: 0.00209456
2025-05-13 14:02:13,602 - stpipe.Image3Pipeline.skymatch - INFO -
2025-05-13 14:02:13,602 - stpipe.Image3Pipeline.skymatch - INFO - ***** stcal.skymatch.skymatch.skymatch() ended on 2025-05-13 14:02:13.602228
2025-05-13 14:02:13,603 - stpipe.Image3Pipeline.skymatch - INFO - ***** stcal.skymatch.skymatch.skymatch() TOTAL RUN TIME: 0:00:38.939094
2025-05-13 14:02:13,603 - stpipe.Image3Pipeline.skymatch - INFO -
2025-05-13 14:02:13,651 - stpipe.Image3Pipeline.skymatch - INFO - Step skymatch done
2025-05-13 14:02:13,860 - stpipe.Image3Pipeline.outlier_detection - INFO - Step outlier_detection running with args (<jwst.datamodels.library.ModelLibrary object at 0x7f326c788440>,).
2025-05-13 14:02:13,861 - stpipe.Image3Pipeline.outlier_detection - INFO - Outlier Detection mode: imaging
2025-05-13 14:02:13,862 - stpipe.Image3Pipeline.outlier_detection - INFO - Outlier Detection asn_id: a3001
2025-05-13 14:02:13,884 - stpipe.Image3Pipeline.outlier_detection - INFO - Pixel scale ratio (pscale_out/pscale_in): 1.0
2025-05-13 14:02:13,884 - stpipe.Image3Pipeline.outlier_detection - INFO - Computed output pixel scale: 0.06556287116348679 arcsec.
2025-05-13 14:02:13,926 - stpipe.Image3Pipeline.outlier_detection - INFO - Output pixel scale: 0.06556287116348679 arcsec.
2025-05-13 14:02:13,926 - stpipe.Image3Pipeline.outlier_detection - INFO - Driz parameter kernel: square
2025-05-13 14:02:13,927 - stpipe.Image3Pipeline.outlier_detection - INFO - Driz parameter pixfrac: 1.0
2025-05-13 14:02:13,927 - stpipe.Image3Pipeline.outlier_detection - INFO - Driz parameter fillval: NAN
2025-05-13 14:02:13,928 - stpipe.Image3Pipeline.outlier_detection - INFO - Driz parameter weight_type: ivm
2025-05-13 14:02:13,931 - stpipe.Image3Pipeline.outlier_detection - INFO - 1 exposures to drizzle together
2025-05-13 14:02:16,326 - stpipe.Image3Pipeline.outlier_detection - INFO - Resampling science and variance data
2025-05-13 14:02:17,213 - stpipe.Image3Pipeline.outlier_detection - INFO - Update S_REGION to POLYGON ICRS 303.737871386 -26.798120365 303.788696569 -26.786765683 303.776085797 -26.741804855 303.725279472 -26.753155043
2025-05-13 14:02:17,562 - stpipe.Image3Pipeline.outlier_detection - INFO - 1 exposures to drizzle together
2025-05-13 14:02:19,618 - stpipe.Image3Pipeline.outlier_detection - INFO - Resampling science and variance data
2025-05-13 14:02:20,507 - stpipe.Image3Pipeline.outlier_detection - INFO - Update S_REGION to POLYGON ICRS 303.737871386 -26.798120365 303.788696569 -26.786765683 303.776085797 -26.741804855 303.725279472 -26.753155043
2025-05-13 14:02:20,811 - stpipe.Image3Pipeline.outlier_detection - INFO - 1 exposures to drizzle together
2025-05-13 14:02:22,806 - stpipe.Image3Pipeline.outlier_detection - INFO - Resampling science and variance data
2025-05-13 14:02:23,699 - stpipe.Image3Pipeline.outlier_detection - INFO - Update S_REGION to POLYGON ICRS 303.737871386 -26.798120365 303.788696569 -26.786765683 303.776085797 -26.741804855 303.725279472 -26.753155043
2025-05-13 14:02:24,011 - stpipe.Image3Pipeline.outlier_detection - INFO - 1 exposures to drizzle together
2025-05-13 14:02:26,033 - stpipe.Image3Pipeline.outlier_detection - INFO - Resampling science and variance data
2025-05-13 14:02:26,924 - stpipe.Image3Pipeline.outlier_detection - INFO - Update S_REGION to POLYGON ICRS 303.737871386 -26.798120365 303.788696569 -26.786765683 303.776085797 -26.741804855 303.725279472 -26.753155043
2025-05-13 14:02:27,254 - stpipe.Image3Pipeline.outlier_detection - INFO - 1 exposures to drizzle together
2025-05-13 14:02:29,259 - stpipe.Image3Pipeline.outlier_detection - INFO - Resampling science and variance data
2025-05-13 14:02:30,208 - stpipe.Image3Pipeline.outlier_detection - INFO - Update S_REGION to POLYGON ICRS 303.737871386 -26.798120365 303.788696569 -26.786765683 303.776085797 -26.741804855 303.725279472 -26.753155043
2025-05-13 14:02:30,524 - stpipe.Image3Pipeline.outlier_detection - INFO - 1 exposures to drizzle together
2025-05-13 14:02:32,574 - stpipe.Image3Pipeline.outlier_detection - INFO - Resampling science and variance data
2025-05-13 14:02:33,460 - stpipe.Image3Pipeline.outlier_detection - INFO - Update S_REGION to POLYGON ICRS 303.737871386 -26.798120365 303.788696569 -26.786765683 303.776085797 -26.741804855 303.725279472 -26.753155043
2025-05-13 14:02:33,779 - stpipe.Image3Pipeline.outlier_detection - INFO - 1 exposures to drizzle together
2025-05-13 14:02:35,819 - stpipe.Image3Pipeline.outlier_detection - INFO - Resampling science and variance data
2025-05-13 14:02:36,709 - stpipe.Image3Pipeline.outlier_detection - INFO - Update S_REGION to POLYGON ICRS 303.737871386 -26.798120365 303.788696569 -26.786765683 303.776085797 -26.741804855 303.725279472 -26.753155043
2025-05-13 14:02:37,019 - stpipe.Image3Pipeline.outlier_detection - INFO - 1 exposures to drizzle together
2025-05-13 14:02:39,036 - stpipe.Image3Pipeline.outlier_detection - INFO - Resampling science and variance data
2025-05-13 14:02:39,931 - stpipe.Image3Pipeline.outlier_detection - INFO - Update S_REGION to POLYGON ICRS 303.737871386 -26.798120365 303.788696569 -26.786765683 303.776085797 -26.741804855 303.725279472 -26.753155043
2025-05-13 14:02:40,262 - stpipe.Image3Pipeline.outlier_detection - INFO - 1 exposures to drizzle together
2025-05-13 14:02:42,293 - stpipe.Image3Pipeline.outlier_detection - INFO - Resampling science and variance data
2025-05-13 14:02:43,239 - stpipe.Image3Pipeline.outlier_detection - INFO - Update S_REGION to POLYGON ICRS 303.737871386 -26.798120365 303.788696569 -26.786765683 303.776085797 -26.741804855 303.725279472 -26.753155043
2025-05-13 14:02:43,585 - stpipe.Image3Pipeline.outlier_detection - INFO - 1 exposures to drizzle together
2025-05-13 14:02:45,598 - stpipe.Image3Pipeline.outlier_detection - INFO - Resampling science and variance data
2025-05-13 14:02:46,487 - stpipe.Image3Pipeline.outlier_detection - INFO - Update S_REGION to POLYGON ICRS 303.737871386 -26.798120365 303.788696569 -26.786765683 303.776085797 -26.741804855 303.725279472 -26.753155043
2025-05-13 14:02:46,790 - stpipe.Image3Pipeline.outlier_detection - INFO - 1 exposures to drizzle together
2025-05-13 14:02:48,813 - stpipe.Image3Pipeline.outlier_detection - INFO - Resampling science and variance data
2025-05-13 14:02:49,705 - stpipe.Image3Pipeline.outlier_detection - INFO - Update S_REGION to POLYGON ICRS 303.737871386 -26.798120365 303.788696569 -26.786765683 303.776085797 -26.741804855 303.725279472 -26.753155043
2025-05-13 14:02:50,048 - stpipe.Image3Pipeline.outlier_detection - INFO - 1 exposures to drizzle together
2025-05-13 14:02:52,059 - stpipe.Image3Pipeline.outlier_detection - INFO - Resampling science and variance data
2025-05-13 14:02:52,953 - stpipe.Image3Pipeline.outlier_detection - INFO - Update S_REGION to POLYGON ICRS 303.737871386 -26.798120365 303.788696569 -26.786765683 303.776085797 -26.741804855 303.725279472 -26.753155043
2025-05-13 14:02:53,309 - stpipe.Image3Pipeline.outlier_detection - INFO - 1 exposures to drizzle together
2025-05-13 14:02:55,323 - stpipe.Image3Pipeline.outlier_detection - INFO - Resampling science and variance data
2025-05-13 14:02:56,276 - stpipe.Image3Pipeline.outlier_detection - INFO - Update S_REGION to POLYGON ICRS 303.737871386 -26.798120365 303.788696569 -26.786765683 303.776085797 -26.741804855 303.725279472 -26.753155043
2025-05-13 14:02:56,609 - stpipe.Image3Pipeline.outlier_detection - INFO - 1 exposures to drizzle together
2025-05-13 14:02:58,634 - stpipe.Image3Pipeline.outlier_detection - INFO - Resampling science and variance data
2025-05-13 14:02:59,523 - stpipe.Image3Pipeline.outlier_detection - INFO - Update S_REGION to POLYGON ICRS 303.737871386 -26.798120365 303.788696569 -26.786765683 303.776085797 -26.741804855 303.725279472 -26.753155043
2025-05-13 14:02:59,853 - stpipe.Image3Pipeline.outlier_detection - INFO - 1 exposures to drizzle together
2025-05-13 14:03:01,870 - stpipe.Image3Pipeline.outlier_detection - INFO - Resampling science and variance data
2025-05-13 14:03:02,762 - stpipe.Image3Pipeline.outlier_detection - INFO - Update S_REGION to POLYGON ICRS 303.737871386 -26.798120365 303.788696569 -26.786765683 303.776085797 -26.741804855 303.725279472 -26.753155043
2025-05-13 14:03:03,097 - stpipe.Image3Pipeline.outlier_detection - INFO - 1 exposures to drizzle together
2025-05-13 14:03:05,099 - stpipe.Image3Pipeline.outlier_detection - INFO - Resampling science and variance data
2025-05-13 14:03:05,989 - stpipe.Image3Pipeline.outlier_detection - INFO - Update S_REGION to POLYGON ICRS 303.737871386 -26.798120365 303.788696569 -26.786765683 303.776085797 -26.741804855 303.725279472 -26.753155043
2025-05-13 14:03:06,359 - stpipe.Image3Pipeline.outlier_detection - INFO - 1 exposures to drizzle together
2025-05-13 14:03:08,406 - stpipe.Image3Pipeline.outlier_detection - INFO - Resampling science and variance data
2025-05-13 14:03:09,352 - stpipe.Image3Pipeline.outlier_detection - INFO - Update S_REGION to POLYGON ICRS 303.737871386 -26.798120365 303.788696569 -26.786765683 303.776085797 -26.741804855 303.725279472 -26.753155043
2025-05-13 14:03:15,140 - stpipe.Image3Pipeline.outlier_detection - INFO - Blotting (2048, 2048) <-- (2568, 2545)
2025-05-13 14:03:15,373 - stpipe.Image3Pipeline.outlier_detection - INFO - 3459 pixels marked as outliers
2025-05-13 14:03:17,439 - stpipe.Image3Pipeline.outlier_detection - INFO - Blotting (2048, 2048) <-- (2568, 2545)
2025-05-13 14:03:17,668 - stpipe.Image3Pipeline.outlier_detection - INFO - 3269 pixels marked as outliers
2025-05-13 14:03:19,761 - stpipe.Image3Pipeline.outlier_detection - INFO - Blotting (2048, 2048) <-- (2568, 2545)
2025-05-13 14:03:19,991 - stpipe.Image3Pipeline.outlier_detection - INFO - 3114 pixels marked as outliers
2025-05-13 14:03:22,055 - stpipe.Image3Pipeline.outlier_detection - INFO - Blotting (2048, 2048) <-- (2568, 2545)
2025-05-13 14:03:22,286 - stpipe.Image3Pipeline.outlier_detection - INFO - 3791 pixels marked as outliers
2025-05-13 14:03:24,363 - stpipe.Image3Pipeline.outlier_detection - INFO - Blotting (2048, 2048) <-- (2568, 2545)
2025-05-13 14:03:24,609 - stpipe.Image3Pipeline.outlier_detection - INFO - 3578 pixels marked as outliers
2025-05-13 14:03:26,723 - stpipe.Image3Pipeline.outlier_detection - INFO - Blotting (2048, 2048) <-- (2568, 2545)
2025-05-13 14:03:26,952 - stpipe.Image3Pipeline.outlier_detection - INFO - 3397 pixels marked as outliers
2025-05-13 14:03:29,015 - stpipe.Image3Pipeline.outlier_detection - INFO - Blotting (2048, 2048) <-- (2568, 2545)
2025-05-13 14:03:29,248 - stpipe.Image3Pipeline.outlier_detection - INFO - 3135 pixels marked as outliers
2025-05-13 14:03:31,309 - stpipe.Image3Pipeline.outlier_detection - INFO - Blotting (2048, 2048) <-- (2568, 2545)
2025-05-13 14:03:31,539 - stpipe.Image3Pipeline.outlier_detection - INFO - 3577 pixels marked as outliers
2025-05-13 14:03:33,616 - stpipe.Image3Pipeline.outlier_detection - INFO - Blotting (2048, 2048) <-- (2568, 2545)
2025-05-13 14:03:33,852 - stpipe.Image3Pipeline.outlier_detection - INFO - 3332 pixels marked as outliers
2025-05-13 14:03:35,913 - stpipe.Image3Pipeline.outlier_detection - INFO - Blotting (2048, 2048) <-- (2568, 2545)
2025-05-13 14:03:36,142 - stpipe.Image3Pipeline.outlier_detection - INFO - 3386 pixels marked as outliers
2025-05-13 14:03:38,199 - stpipe.Image3Pipeline.outlier_detection - INFO - Blotting (2048, 2048) <-- (2568, 2545)
2025-05-13 14:03:38,429 - stpipe.Image3Pipeline.outlier_detection - INFO - 3569 pixels marked as outliers
2025-05-13 14:03:40,494 - stpipe.Image3Pipeline.outlier_detection - INFO - Blotting (2048, 2048) <-- (2568, 2545)
2025-05-13 14:03:40,726 - stpipe.Image3Pipeline.outlier_detection - INFO - 3126 pixels marked as outliers
2025-05-13 14:03:42,838 - stpipe.Image3Pipeline.outlier_detection - INFO - Blotting (2048, 2048) <-- (2568, 2545)
2025-05-13 14:03:43,084 - stpipe.Image3Pipeline.outlier_detection - INFO - 3275 pixels marked as outliers
2025-05-13 14:03:45,217 - stpipe.Image3Pipeline.outlier_detection - INFO - Blotting (2048, 2048) <-- (2568, 2545)
2025-05-13 14:03:45,452 - stpipe.Image3Pipeline.outlier_detection - INFO - 3448 pixels marked as outliers
2025-05-13 14:03:47,571 - stpipe.Image3Pipeline.outlier_detection - INFO - Blotting (2048, 2048) <-- (2568, 2545)
2025-05-13 14:03:47,812 - stpipe.Image3Pipeline.outlier_detection - INFO - 3533 pixels marked as outliers
2025-05-13 14:03:49,914 - stpipe.Image3Pipeline.outlier_detection - INFO - Blotting (2048, 2048) <-- (2568, 2545)
2025-05-13 14:03:50,155 - stpipe.Image3Pipeline.outlier_detection - INFO - 3400 pixels marked as outliers
2025-05-13 14:03:52,226 - stpipe.Image3Pipeline.outlier_detection - INFO - Blotting (2048, 2048) <-- (2568, 2545)
2025-05-13 14:03:52,456 - stpipe.Image3Pipeline.outlier_detection - INFO - 3326 pixels marked as outliers
2025-05-13 14:03:52,715 - stpipe.Image3Pipeline.outlier_detection - INFO - Saved model in ./nis_im_demo_data/Obs006/stage3/jw01475006001_02201_00001_nis_a3001_crf.fits
2025-05-13 14:03:52,887 - stpipe.Image3Pipeline.outlier_detection - INFO - Saved model in ./nis_im_demo_data/Obs006/stage3/jw01475006001_02201_00002_nis_a3001_crf.fits
2025-05-13 14:03:53,058 - stpipe.Image3Pipeline.outlier_detection - INFO - Saved model in ./nis_im_demo_data/Obs006/stage3/jw01475006001_02201_00003_nis_a3001_crf.fits
2025-05-13 14:03:53,229 - stpipe.Image3Pipeline.outlier_detection - INFO - Saved model in ./nis_im_demo_data/Obs006/stage3/jw01475006001_02201_00004_nis_a3001_crf.fits
2025-05-13 14:03:53,400 - stpipe.Image3Pipeline.outlier_detection - INFO - Saved model in ./nis_im_demo_data/Obs006/stage3/jw01475006001_02201_00005_nis_a3001_crf.fits
2025-05-13 14:03:53,573 - stpipe.Image3Pipeline.outlier_detection - INFO - Saved model in ./nis_im_demo_data/Obs006/stage3/jw01475006001_02201_00006_nis_a3001_crf.fits
2025-05-13 14:03:53,744 - stpipe.Image3Pipeline.outlier_detection - INFO - Saved model in ./nis_im_demo_data/Obs006/stage3/jw01475006001_02201_00007_nis_a3001_crf.fits
2025-05-13 14:03:53,922 - stpipe.Image3Pipeline.outlier_detection - INFO - Saved model in ./nis_im_demo_data/Obs006/stage3/jw01475006001_02201_00008_nis_a3001_crf.fits
2025-05-13 14:03:54,103 - stpipe.Image3Pipeline.outlier_detection - INFO - Saved model in ./nis_im_demo_data/Obs006/stage3/jw01475006001_02201_00009_nis_a3001_crf.fits
2025-05-13 14:03:54,426 - stpipe.Image3Pipeline.outlier_detection - INFO - Saved model in ./nis_im_demo_data/Obs006/stage3/jw01475006001_02201_00010_nis_a3001_crf.fits
2025-05-13 14:03:54,604 - stpipe.Image3Pipeline.outlier_detection - INFO - Saved model in ./nis_im_demo_data/Obs006/stage3/jw01475006001_02201_00011_nis_a3001_crf.fits
2025-05-13 14:03:54,812 - stpipe.Image3Pipeline.outlier_detection - INFO - Saved model in ./nis_im_demo_data/Obs006/stage3/jw01475006001_02201_00012_nis_a3001_crf.fits
2025-05-13 14:03:55,032 - stpipe.Image3Pipeline.outlier_detection - INFO - Saved model in ./nis_im_demo_data/Obs006/stage3/jw01475006001_02201_00013_nis_a3001_crf.fits
2025-05-13 14:03:55,519 - stpipe.Image3Pipeline.outlier_detection - INFO - Saved model in ./nis_im_demo_data/Obs006/stage3/jw01475006001_02201_00014_nis_a3001_crf.fits
2025-05-13 14:03:55,697 - stpipe.Image3Pipeline.outlier_detection - INFO - Saved model in ./nis_im_demo_data/Obs006/stage3/jw01475006001_02201_00015_nis_a3001_crf.fits
2025-05-13 14:03:55,918 - stpipe.Image3Pipeline.outlier_detection - INFO - Saved model in ./nis_im_demo_data/Obs006/stage3/jw01475006001_02201_00016_nis_a3001_crf.fits
2025-05-13 14:03:56,179 - stpipe.Image3Pipeline.outlier_detection - INFO - Saved model in ./nis_im_demo_data/Obs006/stage3/jw01475006001_02201_00017_nis_a3001_crf.fits
2025-05-13 14:03:56,180 - stpipe.Image3Pipeline.outlier_detection - INFO - Step outlier_detection done
2025-05-13 14:03:56,408 - stpipe.Image3Pipeline.resample - INFO - Step resample running with args (<jwst.datamodels.library.ModelLibrary object at 0x7f326c788440>,).
2025-05-13 14:03:56,945 - stpipe.Image3Pipeline.resample - INFO - Pixel scale ratio (pscale_out/pscale_in): 1.0
2025-05-13 14:03:56,945 - stpipe.Image3Pipeline.resample - INFO - Computed output pixel scale: 0.06556287116348679 arcsec.
2025-05-13 14:03:56,985 - stpipe.Image3Pipeline.resample - INFO - Output pixel scale: 0.06556287116348679 arcsec.
2025-05-13 14:03:56,986 - stpipe.Image3Pipeline.resample - INFO - Driz parameter kernel: square
2025-05-13 14:03:56,987 - stpipe.Image3Pipeline.resample - INFO - Driz parameter pixfrac: 1.0
2025-05-13 14:03:56,987 - stpipe.Image3Pipeline.resample - INFO - Driz parameter fillval: NAN
2025-05-13 14:03:56,987 - stpipe.Image3Pipeline.resample - INFO - Driz parameter weight_type: ivm
2025-05-13 14:03:56,999 - stpipe.Image3Pipeline.resample - INFO - Resampling science and variance data
2025-05-13 14:03:59,141 - stpipe.Image3Pipeline.resample - INFO - Resampling science and variance data
2025-05-13 14:04:00,036 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:01,031 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:02,000 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:05,092 - stpipe.Image3Pipeline.resample - INFO - Resampling science and variance data
2025-05-13 14:04:05,931 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:06,856 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:07,743 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:10,669 - stpipe.Image3Pipeline.resample - INFO - Resampling science and variance data
2025-05-13 14:04:11,517 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:12,443 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:13,335 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:16,279 - stpipe.Image3Pipeline.resample - INFO - Resampling science and variance data
2025-05-13 14:04:17,121 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:18,047 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:18,930 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:21,848 - stpipe.Image3Pipeline.resample - INFO - Resampling science and variance data
2025-05-13 14:04:22,728 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:23,712 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:24,652 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:27,668 - stpipe.Image3Pipeline.resample - INFO - Resampling science and variance data
2025-05-13 14:04:28,516 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:29,447 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:30,338 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:33,357 - stpipe.Image3Pipeline.resample - INFO - Resampling science and variance data
2025-05-13 14:04:34,189 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:35,119 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:36,019 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:38,963 - stpipe.Image3Pipeline.resample - INFO - Resampling science and variance data
2025-05-13 14:04:39,794 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:40,716 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:41,609 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:44,587 - stpipe.Image3Pipeline.resample - INFO - Resampling science and variance data
2025-05-13 14:04:45,467 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:46,459 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:47,407 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:50,453 - stpipe.Image3Pipeline.resample - INFO - Resampling science and variance data
2025-05-13 14:04:51,285 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:52,214 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:53,108 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:56,094 - stpipe.Image3Pipeline.resample - INFO - Resampling science and variance data
2025-05-13 14:04:56,929 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:57,864 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:04:58,757 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:05:01,709 - stpipe.Image3Pipeline.resample - INFO - Resampling science and variance data
2025-05-13 14:05:02,543 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:05:03,471 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:05:04,353 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:05:07,265 - stpipe.Image3Pipeline.resample - INFO - Resampling science and variance data
2025-05-13 14:05:08,149 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:05:09,142 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:05:10,091 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:05:13,077 - stpipe.Image3Pipeline.resample - INFO - Resampling science and variance data
2025-05-13 14:05:13,925 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:05:14,863 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:05:15,746 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:05:18,697 - stpipe.Image3Pipeline.resample - INFO - Resampling science and variance data
2025-05-13 14:05:19,537 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:05:20,458 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:05:21,344 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:05:24,306 - stpipe.Image3Pipeline.resample - INFO - Resampling science and variance data
2025-05-13 14:05:25,143 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:05:26,081 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:05:26,962 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:05:29,893 - stpipe.Image3Pipeline.resample - INFO - Resampling science and variance data
2025-05-13 14:05:30,782 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:05:31,776 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:05:32,729 - stpipe.Image3Pipeline.resample - INFO - Drizzling (2048, 2048) --> (2568, 2545)
2025-05-13 14:05:33,979 - stpipe.Image3Pipeline.resample - INFO - Update S_REGION to POLYGON ICRS 303.737871386 -26.798120365 303.788696569 -26.786765683 303.776085797 -26.741804855 303.725279472 -26.753155043
2025-05-13 14:05:34,302 - stpipe.Image3Pipeline.resample - INFO - Saved model in ./nis_im_demo_data/Obs006/stage3/image3_association_i2d.fits
2025-05-13 14:05:34,303 - stpipe.Image3Pipeline.resample - INFO - Step resample done
2025-05-13 14:05:34,527 - stpipe.Image3Pipeline.source_catalog - INFO - Step source_catalog running with args (<ImageModel(2568, 2545) from image3_association_i2d.fits>,).
2025-05-13 14:05:34,583 - stpipe.Image3Pipeline.source_catalog - INFO - Using APCORR reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_apcorr_0008.fits
2025-05-13 14:05:34,591 - stpipe.Image3Pipeline.source_catalog - INFO - Using ABVEGAOFFSET reference file: /home/runner/crds/references/jwst/niriss/jwst_niriss_abvegaoffset_0003.asdf
2025-05-13 14:05:34,592 - stpipe.Image3Pipeline.source_catalog - INFO - Instrument: NIRISS
2025-05-13 14:05:34,592 - stpipe.Image3Pipeline.source_catalog - INFO - Detector: NIS
2025-05-13 14:05:34,593 - stpipe.Image3Pipeline.source_catalog - INFO - Filter: CLEAR
2025-05-13 14:05:34,593 - stpipe.Image3Pipeline.source_catalog - INFO - Pupil: F150W
2025-05-13 14:05:34,594 - stpipe.Image3Pipeline.source_catalog - INFO - Subarray: FULL
2025-05-13 14:05:34,661 - stpipe.Image3Pipeline.source_catalog - INFO - AB to Vega magnitude offset 1.19753
2025-05-13 14:05:39,074 - stpipe.Image3Pipeline.source_catalog - INFO - Detected 2365 sources
2025-05-13 14:05:40,432 - stpipe.Image3Pipeline.source_catalog - INFO - Wrote source catalog: ./nis_im_demo_data/Obs006/stage3/image3_association_cat.ecsv
2025-05-13 14:05:40,543 - stpipe.Image3Pipeline.source_catalog - INFO - Saved model in ./nis_im_demo_data/Obs006/stage3/image3_association_segm.fits
2025-05-13 14:05:40,544 - stpipe.Image3Pipeline.source_catalog - INFO - Wrote segmentation map: image3_association_segm.fits
2025-05-13 14:05:40,546 - stpipe.Image3Pipeline.source_catalog - INFO - Step source_catalog done
2025-05-13 14:05:40,550 - stpipe.Image3Pipeline - INFO - Step Image3Pipeline done
2025-05-13 14:05:40,551 - stpipe - INFO - Results used jwst version: 1.18.0
# Print out the time benchmark
time1 = time.perf_counter()
print(f"Runtime so far: {time1 - time0:0.0f} seconds")
print(f"Runtime for Image3: {time1 - time_image3:0.0f} seconds")
Runtime so far: 1021 seconds
Runtime for Image3: 430 seconds
Verify which pipeline steps were run#
if doimage3:
# Identify *_i2d file and open as datamodel
i2d = glob.glob(os.path.join(image3_dir, "*_i2d.fits"))[0]
i2d_f = datamodels.open(i2d)
# Check which steps were run
i2d_f.meta.cal_step.instance
Check which reference files were used to calibrate the dataset
if doimage3:
i2d_f.meta.ref_file.instance
8. Visualize the drizzle-combined image#
We are using the Imviz tool
within the jdaviz package to visualize the NIRISS image.
if doviz:
# Identify *_i2d file and open as datamodel
i2d = glob.glob(os.path.join(image3_dir, "*_i2d.fits"))[0]
i2d_f = datamodels.open(i2d)
# Create an Imviz instance and set up default viewer
imviz_i2d = Imviz()
viewer_i2d = imviz_i2d.default_viewer
# Read in the science array for our visualization dataset:
i2d_science = i2d_f.data
# Load the dataset into Imviz
imviz_i2d.load_data(i2d_science)
# Visualize the dataset:
imviz_i2d.show()
viewer_i2d.stretch = 'sqrt'
viewer_i2d.set_colormap('Viridis')
viewer_i2d.cuts = '95%'
Visualize Detected Sources#
Using the source catalog created by the IMAGE3 stage of the pipeline,
mark the detected sources, using different markers for point sources
and extended sources. The source catalog is saved in
image3/image3_association_cat.ecsv file. We will need to
read in the i2d file again to make sure the world
coordinate system (WCS) info is read in.
Read in catalog file and identify point/extended sources#
if doviz:
catalog_file = glob.glob(os.path.join(image3_dir, "*_cat.ecsv"))[0]
catalog = Table.read(catalog_file)
# To identify point/extended sources, use the 'is_extended' column in the source catalog
pt_src, = np.where(~catalog['is_extended'])
ext_src, = np.where(catalog['is_extended'])
# Define coordinates of point and extended sources
pt_coord = Table({'coord': [SkyCoord(ra=catalog['sky_centroid'][pt_src].ra,
dec=catalog['sky_centroid'][pt_src].dec)]})
ext_coord = Table({'coord': [SkyCoord(ra=catalog['sky_centroid'][ext_src].ra,
dec=catalog['sky_centroid'][ext_src].dec)]})
Mark the extended and point sources on the image#
Display combined image; point sources will be marked by small pink circles and extended sources will be marked by larger white circles.
if doviz:
# Read in i2d file to Imviz
imviz_cat = Imviz()
viewer_cat = imviz_cat.default_viewer
imviz_cat.load_data(i2d)
# Adjust settings for viewer
viewer_cat.stretch = 'sqrt'
viewer_cat.set_colormap('Viridis')
viewer_cat.cuts = '95%'
# Show the plot
imviz_cat.show()
# Add marker for point sources:
viewer_cat.marker = {'color': 'pink', 'markersize': 50, 'fill': False}
viewer_cat.add_markers(pt_coord, use_skycoord=True, marker_name='point_sources')
# Add marker for extended sources:
viewer_cat.marker = {'color': 'white', 'markersize': 100, 'fill': False}
viewer_cat.add_markers(ext_coord, use_skycoord=True, marker_name='extended_sources')
